Project | Data Management Plan |
---|---|
Significance of nitrification in shaping planktonic biodiversity in the ocean |
Principal Investigator: David A. Stahl (University of Washington)
Co-Principal Investigator: Virginia Armbrust
Co-Principal Investigator: Allan H Devol
Co-Principal Investigator: Anitra E Ingalls
FEMS Microbiol. Lett.~2012~327~Merbt. S., D.A. Stahl, E.O. Casamayor, E. Marta, G.W. Nicol, and J.I. Prosser~~41~~~~Differential photoinhibition of bacterial and archaeal ammonia oxidation~N~~~~~~
Environ. Microbiol.~2012~14~Yan, J., C.M. Suzanne, H.J.M. Haaijer, H.J.M. Op den Camp, L. van Niftrik, H. Wessels, D.A. Stahl, M. Könneke, D. Rush, J.S.S. Damsté, Y.Y. Hu, and M.S.M. Jetten~~3146~~~~Mimicking the oxygen minimum zones: Stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system~~~~~~~
Limnol. Oceanogr.~2013~58~Amin, S.A., J.W. Moffett, W. Martens-Habbena, J. Jacquot, A. Devol, A. Ingalls, D.A. Stahl, and E.V. Armbrust~~2037~~~~Copper requirements of the ammonia-oxidizing archaeon Nitrosopumilus maritimus SCM1 and implications for nitrification in the marine environment~~~~~~~
ISME J~2013~7~Horak, R.E.A., W. Qin, A. Schauer, E.V. Armbrust, A.E. Ingalls, J.W. Moffett, D.A. Stahl, and A.H. Devol~~2023~~~~Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea~~~~~~~
Appl. Environ. Microbiol.~2013~79~Nakagawa, T. and D.A Stahl~~6911~~~~Transcriptional response of the archaeal ammonia oxidizer Nitrosopumilus maritimus to low and environmentally relevant ammonia concentrations~~~~~~~
Limnol. Oceanogr.~2013~58~Amin, S.A., J.W. Moffett, W. Martens-Habbena, J. Jacquot, A. Devol, A. Ingalls, D.A. Stahl, and E.V. Armbrust~~~~~~Copper requirements of the ammonia-oxidizing archaeon Nitrosopumilus maritimus SCM1 and implications for nitrification in the marine environment~~~~~~~
Rapid Communications in Mass Spectrometry~2014~28~Heal KR, L.T. Carlson, A.H. Devol, E. Armbrust, J.W. Moffett, D.A. Stahl, and A.E. Ingalls~10.1002/rcm.7040~~~~~Determination of four forms of vitamin B12 and other B vitamins in seawater by liquid chromatography/tandem mass spectrometry~~~~~~~
ISME J.~2013~7~Horak, R.E.A., W. Qin, A. Schauer, E.V. Armbrust, A.E. Ingalls, J.W. Moffett, D.A. Stahl, and A.H. Devol~~~~~~Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea~~~~~~~
Marine Chemistry~2014~162~Jacquot, J.E., R.E.A. Horak, S.A. Amin, A. Devol, A.E. Ingalls, E.V. Armbrust, D.A. Stahl, and J.W. Moffett~DOI: 10.1016/j.marchem.2014.02.002~37~~~~The influence of copper bioavailability on nitrification in a dynamic estuary~~~~~~~
FEMS Microbiol. Lett.~2012~327~Merbt. S., D.A. Stahl, E.O. Casamayor, E. Martí, G.W. Nicol, and J.I. Prosser~~41~~~~Differential photoinhibition of bacterial and archaeal ammonia oxidation~~~~~~~
Molecular Microbiol.~2013~90~Pelve, E.A., W. Martens-Habbena, D.A. Stahl and R. Bernander~~~~~~Mapping of active replication origins in vivo in thaum- and euryarchaeal replicons~~~~~~~
Proc. Natl. Acad. Sci. USA~2014~34~Qin, W., S.A. Amin, W. Martens-Habbena, C.B. Walker, H. Urakawa, A.H. Devol, A.E. Ingalls, J.W. Moffett, E.V. Armbrust, and D.A. Stahl~~12504~~~~Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation~~~~~~~
Limnol. Oceanogr.~2014~59~Urakawa, H., W. Martens-Habbena, C. Huguet, J.R. de la Torre, A.E. Ingalls, A.H. Devol, and D.A. Stahl~~1321~~~~Ammonia availability shapes the seasonal distribution and activity of archaeal and bacterial ammonia oxidizers in the Puget Sound Estuary~~~~~~~
Rapid Communications in Mass Spectrometry~2014~28~Heal KR, L.T. Carlson, A.H. Devol, E. Armbrust, J.W. Moffett, D.A. Stahl, and A.E. Ingalls~10.1002/rcm.7040~2398~~~~Determination of four forms of vitamin B12 and other B vitamins in seawater by liquid chromatography/tandem mass spectrometry~~~~~~~
ISME J.~2013~7~Horak, R.E.A., W. Qin, A. Schauer, E.V. Armbrust, A.E. Ingalls, J.W. Moffett, D.A. Stahl, and A.H. Devol~~2023~~~~Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea~~~~~~~
Marine Chemistry~2014~162~Jacquot, J.E., R.E.A. Horak, S.A. Amin, A. Devol, A.E. Ingalls, E.V. Armbrust, D.A. Stahl, and J.W. Moffett~10.1016/j.marchem.2014.02.002~37~~~~The influence of copper bioavailability on nitrification in a dynamic estuary~~~~~~~
Environ. Microbiol.~2015~17~Martens-Habbena, W., W. Qin, R.E.A. Horak, H. Urakawa, A.J. Schauer, J.W. Moffett, E.V. Armbrust, A.E. Ingalls, A.H. Devol, and D.A. Stahl~~2261~~~~Nitric oxide metabolism in ammonia-oxidizing archaea and its significance to marine nitrification~~~~~~~
FEMS Microbiol. Lett.~2012~327~Merbt, S., D.A. Stahl, E.O. Casamayor, E., Martí, G.W. Nicol, and J.I. Prosser~~41~~~~Differential photoinhibition of bacterial and archaeal ammonia oxidation~~~~~~~
Molecular Microbiol.~2013~90~Pelve, E.A., W. Martens-Habbena, D.A. Stahl and R. Bernander~~538~~~~Mapping of active replication origins in vivo in thaum- and euryarchaeal replicons~~~~~~~
J. American Chem. Soc.~2016~38~Hosseinzadeh, P., N.M. Marshall, S. Tian, J.Hemp, T. Mullen, Y-G. Gao, M.J. Nilges, H. Robinson, David A. Stahl, R.B. Gennis and Y. Lu~~632~~~~A purple cupredoxin from Nitrosopumilus maritimus containing a mononuclear Type 1 copper center with an open binding site~~~~~~2016-11-14 19:50:15.990~
Limnol. Oceanogr.~2013~58~Amin, S.A., J.W. Moffett, W. Martens-Habbena, J. Jacquot, A. Devol, A. Ingalls, D.A. Stahl, and E.V. Armbrust~~2037~~~~Copper requirements of the ammonia-oxidizing archaeon Nitrosopumilus maritimus SCM1 and implications for nitrification in the marine environment~~~~~~2018-02-15 12:38:16.400~
Rapid Comm. Mass Spectrom.~2014~28~Heal KR, L.T. Carlson, A.H. Devol, E. Armbrust, J.W. Moffett, D.A. Stahl, and A.E. Ingalls~10.1002/rcm.7040~2398~~~~. Determination of four forms of vitamin B12 and other B vitamins in seawater by liquid chromatography/tandem mass spectrometry~~~~~~2018-02-15 12:38:16.410~
Proc. Natl. Acad. Sci. USA~2014~34~Qin, W., S.A. Amin, W. Martens-Habbena, C.B. Walker, H. Urakawa, A.H. Devol, A.E. Ingalls, J.W. Moffett, E.V. Armbrust, and D.A. Stahl~~~~~~Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation~~~~~~2018-02-15 12:38:16.490~
Appl. Environ. Microbiol.~2013~79~Nakagawa, T. and D.A Stahl~~6911~~~~Transcriptional response of the archaeal ammonia oxidizer Nitrosopumilus maritimus to low and environmentally relevant ammonia concentrations~~~~~~2018-02-15 12:38:16.456~
Proceedings of the National Academy of Science USA~2017~114~Heal, K.R., W. Qin, W., F. Ribalet, A.D. Bertagnolli, W. Coyote-Maestes,L. R. Hmelo, J.W. Moffett, A.H. Devol, A.H. Armbrust, D.A. Stahl, A.E. Ingalls~~364~~~~Two distinct pools of B12 analogs reveal community interdependencies in the ocean~~~~~~2018-02-15 12:38:16.413~
FEMS Microbiol. Lett.~2012~327~Merbt, S., D.A. Stahl, E.O. Casamayor, E. Martí, G.W. Nicol, and J.I. Prosser~~41~~~~Differential photoinhibition of bacterial and archaeal ammonia oxidation~~~~~~2018-02-15 12:38:16.446~
J. American Chem. Soc.~2016~138~Hosseinzadeh, P., N.M. Marshall, S. Tian, J. Hemp, T. Mullen, Y-G. Gao, M.J. Nilges, H. Robinson, David A. Stahl, R.B. Gennis and Y. Lu~~6324~~~~A purple cupredoxin from Nitrosopumilus maritimus containing a mononuclear Type 1 copper center with an open binding site~~~~~~2018-02-15 12:38:16.433~
Int. J. Syst. Evol. Microbiol.~2017~67~Qin, W., K. R. Heal, R. Ramdasi, J. N. Kobelt, W. Martens-Habbena, A. D. Bertagnolli, S. A. Amin, C. B. Walker, H. Urakawa, M. Könneke, A. H. Devol, J. W. Moffett, E. V. Armbrust, G. J. Jensen, A. E. Ingalls, and D. A. Stahl~10.1099/ijsem.0.002416~5067~~~~Nitrosopumilus maritimus gen. nov., sp. nov., Nitrosopumilus cobalaminogenes gen. nov., sp. nov., Nitrosopumilus oxyclinae gen. nov., sp. nov., and Nitrosopumilus ureaphilus gen. nov., sp. nov., four marine ammonia-oxidizing archaea of the phylum Thaumar~~~~~~2018-02-15 12:38:16.473~
Limnol. Oceanogr.~2014~59~Urakawa, H., W. Martens-Habbena, C. Huguet, J.R. de la Torre, A.E. Ingalls, A.H. Devol, and D.A. Stahl~~~~~~Ammonia availability shapes the seasonal distribution and activity of archaeal and bacterial ammonia oxidizers in the Puget Sound Estuary~~~~~~2018-02-15 12:38:16.496~
Molecular Microbiol.~2013~90~Pelve, E.A., W. Martens-Habbena, D.A. Stahl and R. Bernander~~538~~~~Mapping of active replication origins in vivo in thaum- and euryarchaeal replicons~~~~~~2018-02-15 12:38:16.463~
Proc. Natl. Acad. Sci. USA~2015~112~Qin, W., L.T. Carlson, E.V.Armbrust, A.H. Devol, J.W. Moffett, D.A. Stahl and A.E. Ingalls~~10979~~~~Confounding effects of oxygen and temperature on the TEX86 signature of marine thaumarchaeota~~~~~~2016-11-14 19:50:15.993~
Environ. Microbiol.~2015~17~Martens-Habbena, W., W. Qin, R.E.A. Horak, H. Urakawa, A.J. Schauer, J.W. Moffett, E.V. Armbrust, A.E. Ingalls, A.H. Devol, and D.A. Stahl~~2261~~~~Nitric oxide metabolism in ammonia-oxidizing archaea and its significance to marine nitrification~~~~~~2018-02-15 12:38:16.443~
ISME Journal~2013~7~Horak, R.E.A., W. Qin, A. Schauer, E.V. Armbrust, A.E. Ingalls, J.W. Moffett, D.A. Stahl, and A.H. Devol~~2023~~~~Ammonia oxidation kinetics and temperature sensitivity of a natural marine community dominated by Archaea~~~~~~2018-02-15 12:38:16.426~
Proc. Natl. Acad. Sci. USA~2015~112~Qin, W., L.T. Carlson, E.V.Armbrust, A.H. Devol, J.W. Moffett, D.A. Stahl and A.E. Ingalls~~10979~~~~Confounding effects of oxygen and temperature on the TEX86 signature of marine thaumarchaeota~~~~~~2018-02-15 12:38:16.483~
Marine Chemistry~2014~162~Jacquot, J.E., R.E.A. Horak, S.A. Amin, A. Devol, A.E. Ingalls, E.V. Armbrust, D.A. Stahl, and J.W. Moffett~~~~~~The influence of copper bioavailability on nitrification in a dynamic estuary~~~~~~2018-02-15 12:38:16.436~
Environ. Microbiol.~2012~14~Yan, J., C.M. Suzanne, H.J.M. Haaijer, H.J.M. Op den Camp, L. van Niftrik, H. Wessels, D.A. Stahl, M. Könneke, D. Rush, J.S.S. Damsté, Y.Y. Hu, and M.S.M. Jetten~~3146~~~~Mimicking the oxygen minimum zones: Stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system~~~~~~2018-02-15 12:38:16.500~
Science~2012~337~Metcalf, W.W., B.M. Griffin, R.M. Cicchillo, J. Gao, S.C. Janga, H.A. Cooke, B.T. Circello, B.S. Evans, W. Martens-Habbena, D.A. Stahl, and W.A. van der Donk~~1104~~~~Synthesis of methylphosphonic acid by marine microbes: a source for methane in the aerobic ocean~~~~~~2018-02-15 12:38:16.453~
Environ. Microbiol. Reports~2017~9~Qin, W., K.A. Meinhardt, J.W. Moffett, A.H. Devol, E.V. Armbrust, A. E. Ingalls, and D.A. Stahl~~250~~~~Influence of Oxygen Availability on the Activities of Ammonia-oxidizing Archaea~~~~~~2018-02-15 12:38:16.480~