Award: OCE-1338959

Award Title: RAPID: Basin-scale genetics of marine zooplankton
Funding Source: NSF Division of Ocean Sciences (NSF OCE)
Program Manager: David L. Garrison

Outcomes Report

Intellectual Merit Climate change is impacting the distributions of organisms on Earth in both terrestrial and marine environments. In marine systems, planktonic species are among the most sensitive indicators of environmental change. While plankton are known to exhibit dramatic range shifts as an important ecological response to ocean change, very little is known about their potential for evolutionary response. Given the key roles that metazoan plankton play in marine food webs and in biogeochemical cycling, obtaining deeper understanding of the genetics and adaption of plankton populations is critically important in the context of climate change. The goal of this research was to determine how the pelagic environment controls genetic variation within plankton species, and the extent to which plankton populations in distinct ocean habitats are locally adapted to their environment. This award supported rapid response research in collaboration with the Atlantic Meridional Transect Programme, and these investigators obtained an exceptionally valuable set of samples and oceanographic data across a basin-scale ocean transect that transited all major pelagic biomes in the Atlantic Ocean. Our results support the overarching inference that metazoan plankton populations are locally adapted to particular oceanographic environments. Population genomic studies in both planktonic copepods and pteropods identified genetically distinct populations that were endemic to particular ocean ecosystems (e.g, equatorial Atlantic; Figs. 1 & 2), suggesting long-term isolation from populations in other ocean biomes. For example, using a RADSeq approach to assay single-nucleotide (SNP) variation across the genome in 322 animals of the large-bodied migratory copepod Pleuromamma xiphias (49 °N – 45 °S, 12 sites; Fig. 2), we documented three genetically distinct populations across the distribution of this species in the Atlantic Ocean, with sites in the equatorial biome exhibiting highest levels of differentiation in Bayesian clustering, principal component, and pairwise FSTanalyses. A suite of 57 loci were identified that were putatively under directional selection, with allele frequencies at these loci strongly linked to ocean habitat. Ecological studies in P. xiphias also found significant shifts in animal condition across ocean biomes, with particularly high variance in condition in the equatorial province (Fig. 3). There appear to be two, co-occurring P. xiphias populations in the equatorial Atlantic that may correspond to populations identified in population genomic studies, one of which has high animal condition and one of which has low condition (residents, migrants). Relatively few prior population genetic studies have been conducted in oceanic zooplankton, and these observations provide important insight into the presence and geographic distribution of genetically distinct metazoan plankton populations. In addition, we completed several related studies on the biogeography of zooplankton communities across the Atlantic Ocean (copepods, pteropods, amphipods; Fig. 4), characterizing abundance, biomass, and latitudinal gradients in diversity for these groups, as well as identifying biogeographic boundaries and regions of community transition. Results for pteropods and heteropods are particularly timely and important given the sensitivity of these animals to changing ocean chemistry. This award also supported modeling studies in plankton dispersal among ocean biomes in the Atlantic (Chang MS thesis), with results suggesting that both ontogenetic and diel vertical migration significantly impact plankton dispersal. Collectively, our work provides novel insight into the large-scale distribution of genetically distinct populations of metazoan plankton, and some of the mechanisms that drive these patterns at ocean basin scales. Our results also suggest that metazoan plankton are locally adapted to distinct ocean provinces across their distributional range, and they likely do have substantial capacity to adapt in response to ocean change. Broader Impacts All data generated under this award have been submitted for public release, and are available through the project webpage at BCO-DMO (http://www.bco-dmo.org/project/537991). Citable archival copies of several datasets are linked through the project webpage (e.g., doi10.1575/1912/bco-dmo.704664, doi 10.1575/1912/bco-dmo.682247). This award supported significant student training, with four students involved in the research completing BSc, MSc or PhD theses/dissertations in the last year of the award. The students trained also diversify the workforce in Geoscience fields, with the women scientists trained continuing on to postdoctoral or doctoral training, or into STEM teaching positions following completion of their degrees. Our research results were broadly distributed to the scientific community through peer-reviewed journal articles (12), and presentations to scientific audiences at national and international meetings (20). Results were communicated to the public through online blogs while we were at sea (https://atlanticplankton.wordpress.com, http://earthscigradblog.wordpress.com), and through a science outreach event at our School that educates > 5,000 children bi-annually about the ocean that surrounds their Island home (SOEST Open House). Our images of metazoan plankton were published and disseminated in National Geographic magazine (Dutch language edition; July 2015), annual reports for scientific non-profit organizations, and an introductory biology textbook, as well as other outlets. Last Modified: 10/03/2018 Submitted by: Erica Goetze
DatasetLatest Version DateCurrent State
List of all naupliar net tows conducted during RRS James Clark Ross cruise AMT24 from Immingham, United Kingdom to Punta Arenas, Chile in 2014 (Plankton Population Genetics project)2014-11-24Final no updates expected
List of all CTD casts that were sampled for nauplii during RRS James Clark Ross cruise AMT24 from Immingham, United Kingdom to Punta Arenas, Chile in 2014 (Plankton Population Genetics project)2014-11-24Final no updates expected
List of all bongo and RMT tows conducted during RRS James Clark Ross cruise AMT24 from Immingham, United Kingdom to Punta Arenas, Chile in 2014 (Plankton Population Genetics project)2014-11-24Final no updates expected
Data from: Iacchei, M., E. Butcher, E. Portner, Goetze, E. (in press) It’s about time: Insights into temporal genetic patterns in oceanic zooplankton from biodiversity indices. 2017-02-10Final no updates expected
Population genomics study on the planktonic copepod Pleuromamma xiphias: RADSeq data and metadata (Plankton Population Genetics project)2017-03-08Preliminary and in progress
Animal condition data from Pleuromamma xiphias (Atlantic Ocean, AMT24) (Plankton Population Genetics project)2017-03-13Final no updates expected
Overview of population samples included in genetic analyses of Pleuromamma xiphias (Plankton Population Genetics)2017-05-01Final no updates expected
Pleuromamma xiphias mitochondrial genetic data (Atlantic; mtDNA) for analyses of population structure across the Atlantic Ocean2017-05-04Final no updates expected
Haloptilus longicornis population structure (Atlantic Ocean) - Microsatellite data.2017-03-20Final no updates expected
Population genomics study on the planktonic pteropod Cuvierina spp.: RADSeq data and metadata (Plankton Population Genetics project)2017-05-15Preliminary and in progress
Population genomics study on the planktonic copepod Haloptilus longicornis: RADSeq data and metadata (Plankton Population Genetics project)2017-05-15Preliminary and in progress
Metabarcoding zooplankton at station ALOHA: Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU (Plankton Population Genetics project)2017-05-25Final no updates expected
NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample (Plankton Population Genetics project)2017-05-25Final no updates expected

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Principal Investigator: Erica Goetze (University of Hawaii)