Principal Investigator: Christopher A. Francis (Stanford University)
Microbial Ecology~2017~73~Lee, J. A., and C. A. Francis~doi: 10.1007/s00248-016-0865-y~271~~~~Spatiotemporal characterization of San Francisco Bay denitrifying communities: a comparison of nirK and nirS diversity and abundance~~~~~~2017-10-05 14:13:01.96~
Environmental Microbiology~2017~~Lee, J. A., and C. A. Francis~doi:10.1111/1462-2920.13920~~~~~Deep nirS amplicon sequencing of San Francisco Bay sediments enables prediction of geography and environmental conditions from denitrifying community composition~~~~~~2017-10-05 14:13:01.100~
Estuaries and Coasts~2016~39~Damashek J, Casciotti KL, and Francis CA~10.1007/s12237-016-0071-7~1050~~~~Variable Nitrification Rates Across Environmental Gradients in Turbid, Nutrient-Rich Estuary Waters of San Francisco Bay~~~~~~2017-03-11 22:45:11.683~
Frontiers in Aquatic Microbiology~2015~5~Damashek J, Smith JM, Mosier AC, and Francis CA~10.3389/fmicb.2014.00743~743~~~~Benthic Ammonia Oxidizers Differ in Community Structure and Biogeochemical Potential Across a Riverine Delta~~~~~~2017-03-11 22:45:11.693~
Environmental Microbiology Reports~2010~2~Mosier, A.C., and C. A. Francis~10.1111/j.1758-2229.2010.00156.x~667~~~~Denitrifier abundance and activity across the San Francisco Bay estuary~N~~~~~~
PLoS One~2011~6~Blainey, P., A.C. Mosier, A. Potanina, C.A. Francis, and S.R. Quake.~ 10.1371/journal.pone.0016626~e16626~~~~Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis~N~~~~~~
Methods in Enzymology~2011~486~Mosier, A.C., and C. A. Francis~~205~~~~Determining the distribution of marine and coastal ammonia-oxidizing archaea and bacteria using a quantitative approach~N~~~~~~
Applied and Environmental Microbiology~2011~77~Pitcher, A., E. C. Hopmans, A. C. Mosier, S J. Park, S. K. Rhee, C. A. Francis, S. Schouten S, and J.S. Sinninghe Damste.~~3468~~~~Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing Archaea enriched from marine and estuarine sediments~N~~~~~~
ISME Journal~2012~~Lund, M., J. M. Smith, and C. A. Francis~10.1038/ismej.2012.40~~~in preparation~~Diversity, abundance and expression of nitrite reductase (nirK)-like genes in marine thaumarchaea~N~~~~~~
J. Bacteriology~2012~194~Mosier, A. C., E. A. Allen, S. Ferriera, and C. A. Francis~~2119~~~~Genome sequence of "Candidatus Nitrosopumilus salaria" BD31, an ammonia oxidizing archaeon enriched from the San Francisco Bay estuary~N~~~~~~
J. Bacteriology~2012~194~Mosier, A. C., E. A. Allen, S. Ferriera, and C. A. Francis~~2121~~~~Genome sequence of a low-salinity ammonia oxidizing archaeon from the San Francisco Bay estuary, "Candidatus Nitrosoarchaeum limnia" BG20~N~~~~~~
Environmental Microbiology Reports~2010~~Mosier, A.C., and C. A. Francis~10.1111/j.1758-2229.2010.00156.x~~~~~Denitrifier abundance and activity across the San Francisco Bay estuary~N~~~~~~
Frontiers in Aquatic Microbiology~2015~~Damashek J, Smith JM, Mosier AC, and Francis CA~doi:10.3389/fmicb.2014.00743~5:743~~~~Benthic Ammonia Oxidizers Differ in Community Structure and Biogeochemical Potential Across a Riverine Delta~~~~~~~
Microbial Ecology~2012~65~Mosier, A.C., M.B. Lund, and C. A. Francis~~955~~~~Ecophysiology of an Ammonia-Oxidizing Archaeon Adapted to Low-Salinity Habitats~~~~~~~
Frontiers in Aquatic Microbiology~2012~~Biller, S. J., A. C. Mosier, G. F. Wells, and C. A. Francis~doi: 10.3389/fmicb.2012.00252~~~~~Global biodiversity of aquatic ammonia-oxidizing archaea is partitioned by habitat~~~~~~~
Applied and Environmental Microbiology~2011~77~Pitcher, A., E. C. Hopmans, A. C. Mosier, S J. Park, S. K. Rhee, C. A. Francis, S. Schouten S, and J.S. Sinninghe Damst�©.~~3468~~~~Core and intact polar glycerol dibiphytanyl glycerol tetraether lipids of ammonia-oxidizing Archaea enriched from marine and estuarine sediments~N~~~~~~