Principal Investigator: Ramunas Stepanauskas (Bigelow Laboratory for Ocean Sciences)
The ISME Journal~2016~10~Dyksma S, Bischof K, Fuchs BM, Hoffmann K, Meier D, Meyerdierks A, Pjevac P, Probandt D, Richter M, Stepanauskas R, Mußmann M~~1939~~~~Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments.~~~~~~2016-09-29 05:47:16.160~
The ISME Journal~2015~9~Field EK, Sczyrba A, Lyman AE, Harris CC, Woyke T, Stepanauskas R, Emerson D~~857~~~~Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount.~~~~~~2016-09-29 05:47:16.163~
Frontiers in Microbiology~2015~6~Labonte JM, Field EK, Lau M, Chivian D, van Heerden E, Wommack KE, Kieft TL, Onstott TC, Stepanauskas R.~~649~~~~Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population.~~~~~~~
ISME Journal~2015~~Labonté JM, Swan BK, Poulos B, Luo H, Koren S, Hallam SJ, Sullivan MB, Woyke T, Wommack KE, Stepanauskas R.~~~~~~Single cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton.~~~~~~~
Frontiers in Microbiology~2015~6~Stepanauskas R.~~258~~~~Wiretapping into microbial interactions by single cell genomics~~~~~~~
Environmental Microbiology Reports~2015~7~Stepanauskas R.~~36~~~~Crystal Ball: Re-defining microbial diversity from its single-celled building blocks~~~~~~~
Elife~2014~3~Roux S, Hawley AK, Beltran MT, Scofield M, Schwientek P, Stepanauskas R, Woyke T, Hallam SJ, Sullivan MB.~~03125~~~~Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics~~~~~~~
Life Sciences in Space Research~2014~2~Kminek G, Conley C, Allen CC, Bartlett DH, Beaty DW, Benning LG, Bhartia R, Boston PJ, Duchaine C, Farmer JD, Flynn GJ, Glavin DP, Gorby Y, Hallsworth JE, Mogul R, Moser D, Buford Price P, Pukall R, Fernandez-Remolar D, Smith CL, Stedman K, Steele A, Step~~1~~~~Report of the workshop for life detection in samples from Mars.~~~~~~~
Nature Protocols~2014~9~Rinke C, Lee J, Nath N, Goudeau D, Thompson B, Poulton N, Ferguson E, Malmstrom R, Stepanauskas R, Woyke T.~~1038~~~~Obtaining genomes from uncultivated environmental microorganisms.~~~~~~~
ISME Journal~2016~10~Dyksma, S. and Bischof, K. and Fuchs, B.M. and Hoffmann, K. and Meier, D. and Meyerdierks, A. and Pjevac, P. and Probandt, D. and Richter, M. and Stepanauskas, R. and Mußmann, M.~10.1038/ismej.2015.257~1939-1953~~~~Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments~~~~~~2017-07-17 15:27:22.660~
ISME Journal~2015~9~Field, E.K. and Sczyrba, A. and Lyman, A.E. and Harris, C.C. and Woyke, T. and Stepanauskas, R. and Emerson, D.~10.1038/ismej.2014.183~857-870~~~~Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount~~~~~~2017-07-17 15:27:22.666~
PeerJ~2017~2017~Jungbluth, S.P. and del Rio, T.G. and Tringe, S.G. and Stepanauskas, R. and Rappé, M.S.~10.7717/peerj.3134~~~~~Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems~~~~~~2017-07-17 15:27:22.670~
Life Sciences in Space Research~2014~2~Kminek, G. and Conley, C. and Allen, C.C. and Bartlett, D.H. and Beaty, D.W. and Benning, L.G. and Bhartia, R. and Boston, P.J. and Duchaine, C. and Farmer, J.D. and Flynn, G.J. and Glavin, D.P. and Gorby, Y. and Hallsworth, J.E. and Mogul, R. and Moser,~10.1016/j.lssr.2014.05.001~1-5~~~~Report of the workshop for life detection in samples from Mars~~~~~~2017-07-17 15:27:22.676~
Frontiers in Microbiology~2015~6~Labonté, J.M. and Field, E.K. and Lau, M. and Chivian, D. and Van Heerden, E. and Wommack, K.E. and Kieft, T.L. and Onstott, T.C. and Stepanauskas, R.~10.3389/fmicb.2015.00349~~~~~Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population~~~~~~2017-07-17 15:27:22.686~
ISME Journal~2015~9~Labonté, J.M. and Swan, B.K. and Poulos, B. and Luo, H. and Koren, S. and Hallam, S.J. and Sullivan, M.B. and Woyke, T. and Eric Wommack, K. and Stepanauskas, R.~10.1038/ismej.2015.48~2386-2399~~~~Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton~~~~~~2017-07-17 15:27:22.693~
Nature~2013~499~Rinke C, Schwientek P, Sczyrba A, Ivanova NN, Anderson IJ, Cheng J-F, Darling A, Malfatti S, Swan BK, Gies EA, Dodsworth JA, Hedlund BP, Tsiamis G, Sievert SM, Liu W-T, Eisen JA, Hallam S, Kyrpides N, Stepanauskas R, Rubin E, Hugenholtz P, Woyke T.~~431~~~~Insights into the phylogeny and coding potential of microbial dark matter.~~~~~~~
Nature Protocols~2014~9~Rinke, C. and Lee, J. and Nath, N. and Goudeau, D. and Thompson, B. and Poulton, N. and Dmitrieff, E. and Malmstrom, R. and Stepanauskas, R. and Woyke, T.~10.1038/nprot.2014.067~1038-1048~~~~Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics~~~~~~2017-07-17 15:27:22.710~
Nature~2013~499~Rinke, C. and Schwientek, P. and Sczyrba, A. and Ivanova, N.N. and Anderson, I.J. and Cheng, J.-F. and Darling, A. and Malfatti, S. and Swan, B.K. and Gies, E.A. and Dodsworth, J.A. and Hedlund, B.P. and Tsiamis, G. and Sievert, S.M. and Liu, W.-T. and Ei~10.1038/nature12352~431-437~~~~Insights into the phylogeny and coding potential of microbial dark matter~~~~~~2017-07-17 15:27:22.716~
eLife~2014~3~Roux, S. and Hawley, A.K. and Torres Beltran, M. and Scofield, M. and Schwientek, P. and Stepanauskas, R. and Woyke, T. and Hallam, S.J. and Sullivan, M.B.~10.7554/eLife.03125~e03125~~~~Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics~~~~~~2017-07-17 15:27:22.723~
Environmental Microbiology Reports~2015~7~Stepanauskas, R.~10.1111/1758-2229.12226~36-37~~~~Re-defining microbial diversity from its single-celled building blocks~~~~~~2017-07-17 15:27:22.733~
Frontiers in Microbiology~2015~6~Stepanauskas, R.~10.3389/fmicb.2015.00258~~~~~Wiretapping into microbial interactions by single cell genomics~~~~~~2017-07-17 15:27:22.740~