Project | Data Management Plan |
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Coevolution of scleractinian corals and their associated microorganisms | DMP_VegaThurber_Medina_OCE-1442306_1442206.pdf (88.51 KB) |
Principal Investigator: Rebecca L. Vega (Oregon State University)
Frontiers in Public Health~2018~6~Trinh P., Zaneveld J, Safranek S, Rabinowitz PM~doi: 10.3389/fpubh.2018.00235.~~~~~One Health Relationships Between Human, Animal, and Environmental Microbiomes~~~~~~2019-03-26 18:38:51.533~
Nature Communications~2018~9~Pollock JF, McMinds R,Smith S, Bourne DG, Willis BL, Medina M, Vega Thurber R, Zaneveld JR.~doi.org/10.1038/s41467-018-07275-x~Pollock20~~~~Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny. (2018) Nature Communications 9: 4921~~~~~~2019-03-26 18:38:51.480~
Frontiers of Marine Science~2018~5~Wang L, Shantz AA, Payet J, Sharpton TJ, Foster A, Burkepile DE, Vega Thurber R. (2018)~doi:10.3389/fmars.2018.00101~~~~~Corals and their microbiomes are differentially affected by exposure to elevated nutrients and a natural thermal anomaly.~~~~~~2019-03-26 18:38:51.486~
Nature Reviews Microbiology~2018~16~Knight R, Vrbanac A, Taylor BC, Aksenov A, Callewaert C, Debelius J, Gonzalez A, Kosciolek T, McCall LI, McDonald D, Melnik AV, Morton JT, Navas J, Quinn, RA, Sanders JD. Swafford, AD, Thompson LR, Tripathi A, Xu ZZ, Zaneveld JR, Zhu Q, Caporaso JG & Dorr~doi:10.1038/s41579-018-0029-9~410~~~~Best Practices for Analyzing Microbiomes~~~~~~2019-03-26 18:38:51.516~
Nat Biotechnology~2019~37~Bolyen, E., Rideout, J.R., Dillon, M.R. et al~doi.org/10.1038/s41587-019-0209-9~852~~~~Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2~~~~~~2019-12-05 10:56:00.586~
Bioscience~2019~69~Burkepile DE and Vega Thurber R~doi:10.1093/biosci/biz047~443~~~~The long arm of species loss: how will defaunation disrupt ecosystems down to the microbial scale?~~~~~~2019-12-05 10:56:00.630~
International Society for Microbial Ecology Journal~2019~~Klinges JG, Rosales SM, McMinds R, Shaver EC, Shantz AA, Esther Peters E, Burkepile DE Silliman B. and Vega Thurber R.~doi.org/10.1038/s41396-019-0482-~~~~~Phylogenetic, genomic, and biogeographic characterization of a novel and ubiquitous marine invertebrate-associated Rickettsiales parasite, Candidatus Aquarickettsia rohweri, gen. nov., sp.~~~~~~2019-12-05 10:56:00.750~
Scientific Reports~2019~9~Maher B, McMinds R, Rice MM, Burkepile DE, Vega Thurber R.~doi.org/10.1038/s41598-019-43274-~~~~~Multiple stressors interact primarily through antagonism to drive ecological, functional, and phylogenetic microbiome changes~~~~~~2019-12-05 10:56:00.763~
Coral Reefs~2019~38~McDervitt-Irwin J, Garren M, McMinds R, Vega Thurber R, Baum J.~doi.org/10.1007/s00338-019-01779-8~331~~~~Variable interaction outcomes of local disturbance and El Niño-induced heat stress on coral microbiome alpha & beta diversity~~~~~~2019-12-05 10:56:00.780~
Frontiers in Marine Science~2019~6~Moreland IA, Gaulke CA, Sharpton TJ, Vega Thurber R, Denver DR.~doi.org/10.3389/fmars.2019.00007~~~~~Microbiome variation in an intertidal sea anemone across latitudes and symbiotic states~~~~~~2019-12-05 10:56:00.793~
PLoS Biology~2019~17~Planes S, Allemand D, Agostini S, Banaigs B, Boissin E, Boss E, Bourdin G, Bowler C, Douville E, Forcioli D, Furla P, Galand PE, Ghiglione J, Gilson É, Lombard S, Moulin C, Pesant S, Poulain J, Reynaud S, Romac S, Sunagawa S, Thomas O, Troublé R, de Varga~doi.org/10.1371/journal.pbio.3000483~e3000483~~~~The Tara Pacific expedition - A pan-ecosystemic approach of the “-omics” complexity of coral reef holobionts across the Pacific Ocean (2019)~~~~~~2019-12-05 10:56:00.823~
PeerJ~2019~7~Rice MM, Maher B, Vega Thurber R, Burkepile DE.~doi: 10.7717/peerj.8056~e8056~~~~Nutrient source has minimal effects on the response of a reef-building coral to concurrent seawater warming and corallivory~~~~~~2019-12-05 10:56:00.836~
Nature Reviews Microbiology~2018~16~Rob Knight, Alison Vrbanac, Bryn C Taylor, Alexander Aksenov, Chris Callewaert, Justine Debelius, Antonio Gonzalez, Tomasz Kosciolek, Laura-Isobel McCall, Daniel McDonald, Alexey V Melnik, James T Morton, Jose Navas, Robert A Quinn, Jon G Sanders, Austin~doi:10.1038/s41579-018-0029-9~410~~~~Best practices for analysing microbiomes~~~~~~2019-12-05 10:56:00.956~
PLoS Biology~2019~17~Wilkins LGE, Leray M, Yuen B, Peixoto R, Pereira TJ, Bik HM, Coil DA, Duffy JE, Herre EA, Lessios H, Lucey NE, Mejia LC, O’Dea A, Rasher DB, Sharp K, Sogin EM, Thacker RW, Vega Thurber R, Wcislo WT, Wilbanks EG, Eisen JA~doi.org/10.1371/journal.pbio.3000533~e3000533~~~~Host-associated microbiomes and their roles in marine ecosystem functions~~~~~~2019-12-05 10:56:00.983~
Nature~2017~551~Thompson LR, Sanders JG et al~doi: 10.1038/nature24621~doi: 10.1~~~~A communal catalogue reveals Earth?s multiscale microbial diversity.~~~~~~2018-02-09 17:13:12.646~
Nature Microbiology~2017~2~Zaneveld JR, McMinds R, Vega Thurber R.~doi:10.1038/nmicrobiol.2017.121~~~~~An Anna Karenina Principle for Microbiomes: many stressors destabilize rather than predictably shift animal microbiomes~~~~~~2018-02-09 17:13:12.650~
Nature Climate Change~2017~7~Torda G, Donelson JM, Aranda M, Barshis DJ, Bay L, Berumen M, Bourne DG, Cantin N, Foret S, Matz M, Miller M, Moya A, Putnam H, Ravasi T, van Oppen MJH, Vega Thurber R, Vidal-Dupiol J, Voosltra CR, Watson SA, Whitelaw E, Willis B, Munday PL.~doi: 10.1038/nclimate3374~~~~~Rapid adaptive responses to climate change in corals.~~~~~~2018-02-09 17:13:12.656~
Frontiers of Marine Science~2017~4~McDervitt-Irwin J, Garren M, Baums J, Vega Thurber R.~doi: 10.3389/fmars.2017.00262~~~~~2017) Responses of coral-associated bacterial community responses to local and global stressors.~~~~~~2018-02-09 17:13:12.666~
Ecology~2017~98~Schrack EC, Shantz AA, McMinds R, Burkepile DE, Vega Thurber R, Silliman BR.~doi: 10.1002/ecy.1709~830~~~~Predation and nutrient pollution reduce the success and disrupt the microbiome of a foundational coral.~~~~~~2018-02-09 17:13:12.673~