Project | Data Management Plan |
---|---|
Biogeochemical implications of marine phage: Roseophage as a relevant and tractable model |
Principal Investigator: Alison Buchan (University of Tennessee Knoxville)
Co-Principal Investigator: Steven W Wilhelm
Co-Principal Investigator: Shawn R Campagna
PLoS ONE~2012~7~Gulvik, C. A., T. C. Effler, S. W. Wilhelm and A. Buchan.~10.1371/journal.pone.0050362~e50362~~~~De-MetaST-BLAST: A tool for the validation of degenerate primer sets and data mining of publicly available metagenomes~~~~~~~
F1000 Biology Reports~2012~4~Weitz JS and SW Wilhelm~10.3410/B4-17~17~~~~Ocean viruses and their dynamical effects on microbial communities and biogeochemical cycles~~~~~~~
Genome Announcements~2014~2~Ankrah, N. Y. D. Budinoff, C. R. Wilson, W. H. Wilhelm, S. W. Buchan,A.~~e00945-13~~~~Genome sequence of the Sulfitobacter sp. strain 2047-infecting lytic phage phiCB2047-B~~~~~~~
Applied and Environmental Microbiology~2012~78~Cude, W. N. Mooney, J. Tavanaei, A. Hadden, M. K. Frank, A. Gulvik, C. A. May, A. L. Buchan, A.~~~~~~The production of the secondary metabolite indigoidine contributes to competitive surface colonization in the marine roseobacter Phaeobacter sp. strain Y4I~~~~~~~
Frontiers in Aquatic Microbiology~2013~4~Cude, W.N. Buchan, A.~~doi: 10.3~~~~Acyl homoserine lactone-based quorum sensing in the Roseobacter clade: complex cell-to-cell communication controls multiple physiologies~~~~~~~
Genome Announcements~2014~2~Ankrah, N. Y. D. Budinoff, C. R. Wilson, W. H. Wilhelm, S. W. Buchan, A.~~e01125-14~~~~Genome sequence of two temperate phage, pCB2047-A and pCB2047-C, infecting Sulfitobacter sp. strain 2047~~~~~~~
International Society of Microbial Ecology Journal~2014~8~Ankrah, N. Y. D., May, A. L. Middleton, J. L., Jones, D. R. Hadden, M.K. Gooding, J. R. LeCleir, G. R.. Wilhelm, S. W. Campagna, S. R. Buchan, A.~~1089~~~~Phage infection of an environmentally relevant marine bacterium alters host metabolism and lysate composition~~~~~~~
Nature Reviews Microbiology~2014~12~Jover, LH, Effler, T.C. Buchan, A. Wilhelm, S. W. Weitz, J. S.~~519~~~~Analysis:The elemental composition of virus particles: implications for marine biogeochemical cycles.~~~~~~~
Applied and Environmental Microbiology~2015~81~Cude, W. N. Prevatte, C. W. Hadden, M. K. May, A. L. Smith, R. T. Swain, C. L. Campagna, S. R. Buchan, A.~~1417~~~~Phaeobacter sp. strain Y4I utilizes two separate cell-to-cell communication systems to regulate the production of the antimicrobial indigoidine~~~~~~~
Nature Reviews Microbiology~2014~12~Buchan, A. LeCleir, G. R. Gulvik, C. A. Gonzalez, J.M. B~~686~~~~Master recyclers: the biogeochemical contributions and physiological attributes of bacteria associated with marine phytoplankton blooms~~~~~~~
Genome Announcement~2014~2~Ankrah, N. Y. D. Budinoff, C. R. Wilson, W. H. Wilhelm, S. W. Buchan, A.~~e00945-13~~~~Genome sequence of the Sulfitobacter sp. 2047 infecting lytic phage pCB2047-B~~~~~~~
Applied and Environmental Microbiology~2012~78~Cude, W. N. Mooney, J. Tavanaei, A. A. Hadden, M. K. Frank, A. M. Gulvik, C. A. May, A. L. Buchan, A.~~4771~~~~The production of the secondary metabolite indigoidine contributes to competitive surface colonization in the marine roseobacter Phaeobacter sp. strain Y4I~~~~~~~
Genome Announcements~2014~2~Ankrah, N. Y. D. Budinoff, C. R. Wilson, W. H. Wilhelm, S. W. Buchan, A~~300945~~~~Genome sequence of the Sulfitobacter sp. 2047 infecting lytic phage pCB2047-B~~~~~~2016-04-14 14:49:13.510~
Genome Announcements~2014~2~Ankrah, N. Y. D. Budinoff, C. R. Wilson, W.H. Wilhelm, S. W.~~e00108~~~~Genome sequence of two temperate phage, pCB2047-A and pCB2047-C, infecting Sulfitobacter sp. strain 2047~~~~~~2016-04-14 14:49:13.516~
Genome Announcements~2014~2~Ankrah, N. Y. D. Lane, T. Budinoff, C. Hadden, M. K. Buchan, A.~~e01125-14~~~~Draft genome sequence of Sulfitobacter sp. CB2047, a member of the Roseobacter clade of marine bacteria~~~~~~2016-04-14 14:49:13.526~
International Society for Microbial Ecology Journal~2014~8~Ankrah, N. Y. D. May, A. L. Middleton, J. L. Jones, D. R. Hadden, M. K. Gooding, J. R. LeCleir, G. R. Wilhelm, S. W. Campagna, S. R. Buchan, A~~1089~~~~Metabolic response of a marine bacterium to phage infection provides insights into bacterial physiology and ocean biogeochemistry.~~~~~~2016-04-14 14:49:13.533~
Nature Reviews Microbiology~2014~12~Buchan, A LeCleir, G. R. Gulvik, C. A. Gonzalez, J. M.~~686~~~~Master recyclers: the biogeochemical contributions and physiological attributes of bacteria associated with marine phytoplankton blooms~~~~~~2016-04-14 14:49:13.546~
Frontiers in Aquatic Microbiology~2013~4~Cude, W. N. Buchan, A~~336~~~~Acyl homoserine lactone-based quorum sensing in the Roseobacter clade: complex cell-to-cell communication controls multiple physiologies~~~~~~2016-04-14 14:49:13.553~
Applied and Environmental Microbiology~2012~78~Cude, W. N. Mooney, J. Tavanaei, A. A. Hadden, M. K. Frank, A. Gulvik, C. A. May, A. L. Buchan, A~~4771~~~~The production of the secondary metabolite indigiodine contributes to the competitive surface colonization in the marine roseobacter Phaeobacter sp. strain Y4I.~~~~~~2016-04-14 14:49:13.560~
Applied and Environmental Microbiology~2015~81~Cude, W. N. Prevatte, C. W. Hadden, M. K. May, A. L. Smith, R. T. Swain, C. L. Campagna, S. R. Buchan, A~~1417~~~~Phaeobacter sp. Y4I utilizes two separate cell-to-cell communication systems to regulate the production of the antimicrobial indigoidine~~~~~~2016-04-14 14:49:13.566~
BMC Research Notes~2012~5~Ernest, B. and Gooding, J.R. and Campagna, S.R. and Saxton, A.M. and Voy, B.H.~10.1186/1756-0500-5-596~~~~~MetabR: An R script for linear model analysis of quantitative metabolomic data~~~~~~2016-04-14 14:49:13.570~
Frontiers in Microbiology~2015~6~Fulweiler RW, EM Heiss, MK Rogener, SE Newell, GR LeCleir, SM Kortebein and SW WIlhelm~10.3389/fmicb.2015.00418~~~~~Examining the impact of acetylene on N-fixation and the active sediment microbial community~~~~~~2016-04-14 14:49:13.576~
PLoS ONE~2012~~Gulvik CA, TC Effler, SW Wilhelm and A Buchan~10.1371/journal.pone.0050362~~~~~De-MetaST-BLAST: A Tool for the Validation of Degenerate Primer Sets and Data Mining of Publicly Available Metagenomes~~~~~~2016-04-14 14:49:13.583~
Nature Reviews Microbiology~2014~12~Jover LF, TC Effler, A Buchan, SW Wilhelm and JS Weitz~10.1038/nrmicro3289~~~~~The elemental composition of virus particles: implications for marine biogeochemical cycles~~~~~~2016-04-14 14:49:13.586~
The ISME Journal~2015~10~Mojica KDA, J Huisman, SW Wilhelm and CPD Brussaard~10.1038/ismej.2015.130~500~~~~Climate change-induced increase in viral lysis rates of marine phytoplankton will reduce oceanic ecosystem efficiency~~~~~~2016-04-14 14:49:13.600~
Virology~2014~466-467~Moniruzzaman M, GF LeCleir, CM Brown, CJ Gobler, KD Bidle, WH WIlson and SW Wilhelm~10.1016/j.virol.2014.06.031~~~~~Genome of brown tide virus (AaV), the little giant of the Megaviridae, elucidates NCLDV genome expansion and host ? virus coevolution~~~~~~2016-04-14 14:49:13.603~
Aquatic Microbial Ecology~2015~75~Steen, A. D. Vazin, J. P. Hagen, S. M. Mulligan, K. H. Wilhelm, S. W.~~271~~~~Substrate specificity of aquatic extracellular peptidases assessed by competitive inhibition assays using synthetic substrates~~~~~~2016-04-14 14:49:13.616~
Nature Microbiology~2016~2~Wigington CH, D Sonderegger, CPD Brussaard, A Buchan, JF Finke, JA Fuhrman, JT Lennon, M Middelboe, CA Suttle, C Stock, WH Wilson, KE Wommack, SW Wilhelm and JS Weitz~10.1038/NMICROBIOL.2015.24~~~~~Re-examination of the relationship between marine virus and microbial cell abundances~~~~~~2016-04-14 14:49:13.623~
Applied and Environmental Microbiology~2015~81~Zhan, Y. Buchan, A. Chen. F.~~5196~~~~Novel N4 bacteriophages prevail in the cold biosphere.~~~~~~2016-04-14 14:49:13.633~
PLoS ONE~2014~9~Zimmer, B.L. and May, A.L. and Bhedi, C.D. and Dearth, S.P. and Prevatte, C.W. and Pratte, Z. and Campagna, S.R. and Richardson, L.L.~10.1371/journal.pone.0108541~~~~~Quorum sensing signal production and microbial interactions in a polymicrobial disease of corals and the coral surface mucopolysaccharide layer~~~~~~2016-04-14 14:49:13.640~