Project | Data Management Plan |
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Genomic and Transcriptomic Comparison of Iron and Light Physiology in Coastal and Oceanic Diatoms |
Principal Investigator: Bethany D. Jenkins (University of Rhode Island)
Frontiers in Aquatic Microbiology~2011~2~Whitney, L. P.;Lins, J.J.;Hughes, M. P.;Wells, M.L.;Chappell, P.D.;Jenkins,B. D.;~~234~~~~Characterization of putative iron responsive genes as species-specific indicators of iron stress in Thalassiosiroid diatoms~U~~~~~~
Frontiers in microbiology~2013~4~Chappell, P Dreux and Whitney, Leeann P and Haddock, Traci L and Menden-Deuer, Susanne and Roy, Eric G and Wells, Mark L and Jenkins, Bethany D~10.3389/fmicb.2013.00273~273~~~~{Thalassiosira spp. community composition shifts in response to chemical and physical forcing in the northeast Pacific Ocean.}~~~~~~~
PLoS ONE~2012~7~Dyhrman, Sonya T. and Jenkins, Bethany D. and Rynearson, Tatiana A. and Saito, Mak A. and Mercier, Melissa L. and Alexander, Harriet and Whitney, LeAnn P. and Drzewianowski, Andrea and Bulygin, Vladimir V. and Bertrand, Erin M. and Wu, Zhijin and Benitez-~10.1371/journal.pone.0033768~~~~~{The transcriptome and proteome of the diatom thalassiosira pseudonana reveal a diverse phosphorus stress response}~~~~~~~
Frontiers in Microbiology~2011~2~Whitney, LeAnn P. and Lins, Jeremy J. and Hughes, Margaret P. and Wells, Mark L. and Chappell, P. Dreux and Jenkins, Bethany D.~10.3389/fmicb.2011.00234~~~~~{Characterization of Putative Iron Responsive Genes as Species-Specific Indicators of Iron Stress in Thalassiosiroid Diatoms}~~~~~~~
PNAS~2015~112~Alexander, H., Jenkins, B. D., Rynearson, T. A. Dhyrman, S.T~doi: 10.1073/pnas.1421993112~~~~~Metatranscriptome analyses indicated resource partitioning between diatoms in the field~~~~~~~
ISME J~2015~9~Chappell, P.D.*, Whitney, L.P. *, Wallace, J.R., Darer A.I., Jean-Charles, S., and Jenkins, B.D.~doi:10.1038/ismej.2014.171~952~~~~Genetic indicators of iron limitation in wild populations of Thalassiosira oceanica from the northeast Pacific Ocean~~~~~~~
Standards in Genomic Sciences~2014~3~Gilbert, J.A., Dick, G., Jenkins, B., Heidelberg, J., Allen, E., Mackey, K., and DeLong, E.~doi:10.4056/sigs.5749944~~~~~Meeting report: Ocean ?omics science, technology and cyberinfrastructure : current challenges and future requirements (August 20-23, 2013)~~~~~~~
PLoS Biol~2014~12~Keeling, P.J., Burki, F., Wilcox, H.M., Allam, B., Allen, E.E., Amaral-Zettler, L.A., Armbrust, E.V., Archibald, J.M., Bharti, A.K., Bell, C.J., Beszteri, B., Bidle, K.D., Cameron, C.T., Campbell, L., Caron, D.A., Cattolico, R.A., Collier, J.L., Coyne, K.~DOI: 10.1371/journal.pbio.1001889~e1001889~~~~The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing~~~~~~~
Front Microbiol~2012~3~Alexander H, Jenkins BD, Rynearson TA, Saito MA, Mercier ML, Dyhrman ST. (2012).~doi: 10.3389/fmicb.2012.00385~doi: 10.3~~~~Identifying reference genes with stable expression from high throughput sequence data~~~~~~2016-02-02 15:53:31.330~
PNAS~2015~112~Alexander, H., Jenkins, B. D., Rynearson, T. A. Dhyrman, S.T~doi: 10.1073/pnas.1421993112~~~~~Metatranscriptome analyses indicated resource partitioning between diatoms in the field~~~~~~2016-02-02 15:53:31.333~
Frontiers in Microbiology~2013~23 Sept~Chappell, P. D., L. Whitney, T. L. Haddock, S. Menden-Deuer, E. G. Roy, M. Wells, and Jenkins, B. D.~doi: 10.3389/fmicb.2013.00273~~~~~Community Composition Shifts in Response to Chemical and Physical Forcing in the Northeast Pacific Ocean, Frontiers in Microbiology~~~~~~2016-02-02 15:53:31.343~
ISME~2015~9~Chappell, P.D.*, L.P. Whitney*, Wallace, J. R., A.I. Darer, S. Jean-Charles, and Jenkins, B.D~doi: 10.1038/ismej.2014.171~592~~~~Genetic indicators of iron limitation from oceanic diatoms in the northeast Pacific Ocean~~~~~~2016-02-02 15:53:31.350~
PLOS one~2012~7~Dyhrman, S.T., Jenkins, B.D., Rynearson, T.A., Saito, M.A., Mercier, M.L., Alexander, H., Whitney, L.P., Dzrewianowski, A., Bulygin, V.V., Bertrand, E.M., Benitez-Nelson, C., and Heithoff, A.~doi: 10.1371/journal.pone.0033768~~~~~The transcriptome and proteome of the diatom Thalassiosira pseudonana reveal a diverse phosphorus stress response~~~~~~2016-02-02 15:53:31.360~
Standards in Genome Sciences~2014~9~Gilbert, J.A., Dick, G., Jenkins, B., Heidelberg, J., Allen, E., Mackey, K., and DeLong, E.~doi: 10.4056/sigs.5749944~1252~~~~Meeting report: Ocean ?omics science, technology and cyberinfrastructure : current challenges and future requirements (August 20-23, 2013)~~~~~~2016-02-02 15:53:31.366~
PLoS Biol~2014~12~Keeling, P.J., Burki, F., Wilcox, H.M., Allam, B., Allen, E.E., Amaral-Zettler, L.A., Armbrust, E.V., Archibald, J.M., Bharti, A.K., Bell, C.J., Beszteri, B., Bidle, K.D., Cameron, C.T., Campbell, L., Caron, D.A., Cattolico, R.A., Collier, J.L., Coyne, K.~DOI: 10.1371/journal.pbio.1001889~e1001889~~~~The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): Illuminating the Functional Diversity of Eukaryotic Life in the Oceans through Transcriptome Sequencing.~~~~~~2016-02-02 15:53:31.366~
MEPS~2015~537~King AL, Jenkins BD, Wallace JR, Liu Y, Wikfors GH, Milke LM, Meseck SL~doi:10.3354/meps11458~59~~~~Effects of CO2 on growth rate, C:N:P, and fatty acid composition of seven marine phytoplankton species~~~~~~2016-02-02 15:53:31.373~
Frontiers in Aquatic Microbiology~2011~25 Nov~Whitney, L.P., Lins, J.J., Hughes, M.P., Wells, M.L., Chappell, P.D., and Jenkins, B.D.~doi: 10.3389/fmicb.2011.00234~~~~~Characterization of putative iron responsive genes as species-specific indicators of iron stress in Thalassiosiroid diatom~~~~~~2016-02-02 15:53:31.376~