Principal Investigator: Iliana Baums (Pennsylvania State Univ University Park)
Co-Principal Investigator: Webb C Miller
Nature Communications~2016~7~Wood S, Baums IB, Paris CB, Ridgwell A, Kessler WS, Hendy EJ~10.1038/ncomms12571~~~~~El Nino and coral larval dispersal across the eastern Pacific marine barrier.~~~~~~2016-12-02 15:22:24.863~
Molecular Ecology~2016~25~Benestan LM, Ferchaud A-L, Hohenlohe PA, Garner BA, Naylor GJP, Baums IB, Schwartz MK, Kelley JL, and Luikart G~10.1111/mec.13647~~~~~Conservation genomics of natural and managed populations: building a conceptual and practical framework~~~~~~2017-12-15 14:38:35.730~
Reef Encounter~2016~31~Carne L, and Baums IB~~42~~~~Demonstrating effective Caribbean acroporid population enhancement: all three nursery-grown, out-planted taxa spawn August 2015 & 2016 in Belize~~~~~~2017-12-15 14:38:35.733~
Molecular Ecology~2016~~Devlin-Durante MK, Miller MW, Caribbean Acropora Research G, Precht WF, Baums IB~10.1111/mec.13865~~~~~How old are you? Genet age estimates in a clonal animal~~~~~~2017-12-15 14:38:35.740~
Journal of Biogeography~2016~43~Hellberg ME, Prada C, Tan MH, Forsman ZH, and Baums IB~10.1111/jbi.1279~~~~~Getting a grip at the edge: recolonization and introgression in eastern Pacific Porites corals~~~~~~2017-12-15 14:38:35.746~
Coral Reefs~2017~~Irwin A, Greer L, Humston R, Devlin-Durante M, Cabe P, Lescinsky H, Wirth K, Allen Curran H, Baums IB~10.1007/s00338-017-1602-9~~~~~Age and intraspecific diversity of resilient Acropora communities in Belize~~~~~~2017-12-15 14:38:35.750~
Genome Biology and Evolution~2016~8~Parkinson JE, Baumgarten S, Michell CT, Baums IB, LaJeunesse TC, and Voolstra CR~10.1093/gbe/evw019~~~~~Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the Genus Symbiodinium. Genome Biology and Evolution~~~~~~2017-12-15 14:38:35.760~
Scientific Reports~2016~6~Serrano XM, Baums IB, Smith TB, Jones RJ, Shearer TL, and Baker AC~10.1038/srep21619~~~~~Long distance dispersal and vertical gene flow in the Caribbean brooding coral Porites astreoides~~~~~~2017-12-15 14:38:35.763~
Peer J~2017~~Durante M, Baums IB~/10.7287/peerj.preprints.3043v1~~~~~Genome-wide survey of single-nucleotide polymorphisms indicates fine-scale population structure and signs of local selection in the threatened Caribbean elkhorn coral, Acropora palmata~~~~~~2019-04-15 13:52:29.286~
bioRxiv~2018~~Chan A, Lewis CL, Neely KL, Baums IB~10.1101/365650~~~~~Fallen Pillars: The Past, Present, and Future Population Dynamics of a Rare, Specialist Coral-Algal Symbiosis~~~~~~2019-04-15 13:52:29.290~
Mar Pollut Bull~2018~133~Glynn PW, Feingold JS, Baker A, Banks S, Baums IB, Cole J, Colgan MW, Fong P, Glynn PJ, Keith I, Manzello D, Riegl B, Ruttenberg BI, Smith TB, Vera-Zambrano M~10.1016/j.marpolbul.2018.06.002~717~~~~State of corals and coral reefs of the Galapagos Islands (Ecuador): Past, present and future~~~~~~2019-04-15 13:52:29.296~
Integrative and Comparative Biology~2018~58~Kitchen, S. A. Von Kuster, G. Miller, W. Baums, I. B.~1540-7063~E353-E353~~~~STAG: Standard Tools for Acroporid Genotyping~~~~~~2019-04-15 13:52:29.303~
elife~2018~7~Muller, E. M. Bartles, E. Baums, I.B.~10.7554/eLife.35066.001~e35066~~~~Bleaching causes loss of disease resistance within the threatened coral species, Acropora cervicornis~~~~~~2019-04-15 13:52:29.306~
Coral Reefs~2018~37~Neely, K. L. Lewis, C. Chan, A. N. Baums, I. B.~10.1007/s00338-018-1730-x~1087~~~~Hermaphroditic spawning by the gonochoric pillar coral Dendrogyra cylindrus~~~~~~2019-04-15 13:52:29.313~
Coral Reefs~2018~37~O'Donnell, K. E. Lohr, K. E. Bartels, E. Baums, I. B. Patterson, J. T.~10.1007/s00338-018-01743-y~1109~~~~Acropora cervicornis genet performance and symbiont identity throughout the restoration process~~~~~~2019-04-15 13:52:29.320~
Molecular Ecology~2018~27~Parkinson, J. E. Bartels, E. Devlin-Durante, M. K. Lustic, C. Nedimyer, K. Schopmeyer, S. Lirman, D. LaJeunesse, T. C. Baums, I. B.~10.1111/mec.14517~~~~~Extensive transcriptional variation poses a challenge to thermal stress biomarker development for endangered corals~~~~~~2019-04-15 13:52:29.326~
bioRxiv~2018~~Chan, Andrea and Lewis, Cynthia L and Neely, Karen L and Baums, Iliana B~10.1101/365650~~~~~Fallen Pillars: The Past, Present, and Future Population Dynamics of a Rare, Specialist Coral-Algal Symbiosis~~~~~~2019-10-29 13:25:15.756~
PeerJ~2017~5~Devlin-Durante, Meghann K. and Baums, Iliana B.~10.7717/peerj.4077~e4077~~~~Genome-wide survey of single-nucleotide polymorphisms reveals fine-scale population structure and signs of selection in the threatened Caribbean elkhorn coral, Acropora palmata~~~~~~2019-10-29 13:25:15.766~
Ecology and Evolution~2019~9~Drury, Crawford and Greer, Justin B. and Baums, Iliana and Gintert, Brooke and Lirman, Diego~10.1002/ece3.5035~4518-4531~~~~Clonal diversity impacts coral cover in Acropora cervicornis thickets: Potential relationships between density, growth, and polymorphisms~~~~~~2019-10-29 13:25:15.776~
Coral Reefs~2017~36~Irwin, Adele and Greer, Lisa and Humston, Robert and Devlin-Durante, Meghann and Cabe, Paul and Lescinsky, Halard and Wirth, Karl and Allen Curran, H. and Baums, Iliana B.~10.1007/s00338-017-1602-9~1111-1120~~~~Age and intraspecific diversity of resilient Acropora communities in Belize~~~~~~2019-10-29 13:25:15.793~
Coral Reefs~2018~37~O'Donnell, K. E. and Lohr, K. E. and Bartels, E. and Baums, I. B. and Patterson, J. T.~10.1007/s00338-018-01743-y~1109-1118~~~~Acropora cervicornis genet performance and symbiont identity throughout the restoration process~~~~~~2019-10-29 13:25:15.816~
Mol Ecol~2018~27~Parkinson, J. E. and Bartels, E. and Devlin-Durante, M. K. and Lustic, C. and Nedimyer, K. and Schopmeyer, S. and Lirman, D. and LaJeunesse, T. C. and Baums, I. B.~10.1111/mec.14517~1103-1119~~~~Extensive transcriptional variation poses a challenge to thermal stress biomarker development for endangered corals~~~~~~2019-10-29 13:25:15.820~
Molecular Ecology~2016~25~Benestan, L. M. and Ferchaud, A. L. and Hohenlohe, P. A. and Garner, B. A. and Naylor, G. J. P. and Baums, I. B. and Schwartz, M. K. and Kelley, J. L. and Luikart, G.~10.1111/mec.13647~2967-2977~~~~Conservation genomics of natural and managed populations: building a conceptual and practical framework~~~~~~2021-01-29 15:34:35.146~
Molecular Ecology~2019~28~Durante, M. K. and Baums, I. B. and Williams, D. E. and Vohsen, S. and Kemp, D. W.~10.1111/mec.15140~3208-3224~~~~What drives phenotypic divergence among coral clonemates of Acropora palmata?~~~~~~2021-01-29 15:34:35.173~
G3-Genes Genomes Genetics~2019~9~Kitchen, S. A. and Ratan, A. and Bedoya-Reina, O. C. and Burhans, R. and Fogarty, N. D. and Miller, W. and Baums, I. B.~10.1534/g3.119.400125~1633-1646~~~~Genomic Variants Among Threatened Acropora Corals~~~~~~2021-01-29 15:34:35.200~
Frontiers in Marine Science~2020~7~Rodriguez-Casariego, J. A. and Mercado-Molina, A. E. and Garcia-Souto, D. and Ortiz-Rivera, I. M. and Lopes, C. and Baums, I. B. and Sabat, A. M. and Eirin-Lopez, J. M.~10.3389/fmars.2020.560424~17~~~~Genome-Wide DNA Methylation Analysis Reveals a Conserved Epigenetic Response to Seasonal Environmental Variation in the Staghorn Coral Acropora cervicornis~~~~~~2021-01-29 15:34:35.250~
PeerJ~2017~5~Devlin-Durante, Meghann K. and Baums, Iliana B.~https://doi.org/10.7717/peerj.4077~~~~~Genome-wide survey of single-nucleotide polymorphisms reveals fine-scale population structure and signs of selection in the threatened Caribbean elkhorn coral, <i>Acropora palmata</i>~N~e4077~10211883~10211883~OSTI~2021-01-29 17:01:53.813~
Molecular Ecology~2016~25~Benestan, Laura Marilyn and Ferchaud, Anne‐Laure and Hohenlohe, Paul A. and Garner, Brittany A. and Naylor, Gavin J. P. and Baums, Iliana Brigitta and Schwartz, Michael K. and Kelley, Joanna L. and Luikart, Gordon~https://doi.org/10.1111/mec.13647~~~~~Conservation genomics of natural and managed populations: building a conceptual and practical framework~N~p. 2967-2977~10211882~10246686~OSTI~2023-09-17 20:01:00.450~
Molecular Ecology~2016~25~Benestan, Laura Marilyn and Ferchaud, Anne-Laure and Hohenlohe, Paul A. and Garner, Brittany A. and Naylor, Gavin J. P. and Baums, Iliana Brigitta and Schwartz, Michael K. and Kelley, Joanna L. and Luikart, Gordon~10.1111/mec.13647~2967-2977~~~~Conservation genomics of natural and managed populations: building a conceptual and practical framework~~~~~~2019-10-29 13:25:15.733~
Mol Ecol~2016~25~Devlin-Durante, M. K. and Miller, M. W. and Caribbean Acropora Research, Group and Precht, W. F. and Baums, I. B.~10.1111/mec.13865~5628-5646~~~~How old are you? Genet age estimates in a clonal animal~~~~~~2019-10-29 13:25:15.760~
Reef Encounter~2016~31~Carne, L and Baums, I.B.~2016~42-43~~~~Demonstrating effective Caribbean acroporid population enhancement: all three nursery-grown, out-planted taxa spawn August 2015 & 2016 in Belize~~~~~~2019-10-29 13:25:15.743~
Coral Reefs~2017~36~Irwin, Adele and Greer, Lisa and Humston, Robert and Devlin-Durante, Meghann and Cabe, Paul and Lescinsky, Halard and Wirth, Karl and Allen Curran, H. and Baums, Iliana B.~https://doi.org/10.1007/s00338-017-1602-9~~~~~Age and intraspecific diversity of resilient Acropora communities in Belize~N~1111 to 1120~10211889~10211889~OSTI~2021-01-29 17:01:53.750~
Microbiome~2020~8~Vohsen, S. A. and Anderson, K. E. and Gade, A. M. and Gruber-Vodicka, H. R. and Dannenberg, R. P. and Osman, E. O. and Dubilier, N. and Fisher, C. R. and Baums, I. B.~10.1186/s40168-020-00798-w~15~~~~Deep-sea corals provide new insight into the ecology, evolution, and the role of plastids in widespread apicomplexan symbionts of anthozoans~~~~~~2021-01-29 15:34:35.273~
Nature Communications~2016~7~Wood, S. and Baums, I. B. and Paris, C. B. and Ridgwell, A. and Kessler, W. S. and Hendy, E. J.~10.1038/ncomms12571~11~~~~El Nino and coral larval dispersal across the eastern Pacific marine barrier~~~~~~2021-01-29 15:34:35.276~
Genome Biology and Evolution~2016~8~Parkinson, J. E. and Baumgarten, S. and Michell, C. T. and Baums, I. B. and LaJeunesse, T. C. and Voolstra, C. R.~10.1093/gbe/evw019~665-680~~~~Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the Genus Symbiodinium~~~~~~2021-01-29 15:34:35.236~
Scientific Reports~2016~6~Serrano, X. M. and Baums, I. B. and Smith, T. B. and Jones, R. J. and Shearer, T. L. and Baker, A. C.~10.1038/srep21619~12~~~~Long distance dispersal and vertical gene flow in the Caribbean brooding coral Porites astreoides~~~~~~2021-01-29 15:34:35.263~
Annual Review of Animal Biosciences~2019~7~Lopez, J.V. and Hannah, B. and Medina, M and Collins, T. and Baums, I.B.~10.1146/annurev-animal-020518-115034~22.1-22.2~~~~The many facets of marine invertebrate conservation genomics~~~~~~2019-10-29 13:25:15.810~
Metabolomics~2019~15~Vohsen, S. A. and Fisher, C. R. and Baums, I. B.~10.1007/s11306-019-1500-y.~34~~~~Metabolomic richness and fingerprints of deep-sea coral species and populations~~~~~~2019-10-29 13:25:15.833~
BioRxiv~2019~~Devlin-Durante, Meghann and Baums, Iliana and Williams, Dana W and Kemp, Dustin~10.1101/514430~514430~~~~What drives phenotypic divergence among coral clonemates?~~~~~~2019-10-29 13:25:15.773~
PeerJ Preprints~2017~5~Durante, Meghann D. and Baums, Iliana B.~10.7287/peerj.preprints.3043v1~~~~~Genome-wide survey of single-nucleotide polymorphisms indicates fine-scale population structure and signs of local selection in the threatened Caribbean elkhorn coral, Acropora palmata~~~~~~2019-10-29 13:25:15.780~
Frontiers in Marine Science~2019~6~Chan, Andrea N. and Lewis, Cynthia L. and Neely, Karen L. and Baums, Iliana B.~10.3389/fmars.2019.00218~~~~~Fallen Pillars: The Past, Present, and Future Population Dynamics of a Rare, Specialist Coral?Algal Symbiosis~~~~~~2019-10-29 13:25:15.753~
Microbiome~2020~8~Vohsen, Samuel A. and Anderson, Kaitlin E. and Gade, Andrea M. and Gruber-Vodicka, Harald R. and Dannenberg, Richard P. and Osman, Eslam O. and Dubilier, Nicole and Fisher, Charles R. and Baums, Iliana B.~https://doi.org/10.1186/s40168-020-00798-w~~~~~Deep-sea corals provide new insight into the ecology, evolution, and the role of plastids in widespread apicomplexan symbionts of anthozoans~N~~10173789~10173789~OSTI~2020-07-21 13:01:56.933~
Peerj~2017~5~Devlin-Durante, M. K. and Baums, I. B.~10.7717/peerj.4077~27~~~~Genome-wide survey of single-nucleotide polymorphisms reveals fine-scale population structure and signs of selection in the threatened Caribbean elkhorn coral, Acropora palrnata~~~~~~2021-01-29 15:34:35.156~
Coral Reefs~2017~36~Irwin, Adele and Greer, Lisa and Humston, Robert and Devlin-Durante, Meghann and Cabe, Paul and Lescinsky, Halard and Wirth, Karl and Allen Curran, H. and Baums, Iliana B.~10.1007/s00338-017-1602-9~1111-1120~~~~Age and intraspecific diversity of resilient Acropora communities in Belize~~~~~~2019-10-29 13:25:15.720~
Scientific Reports~2016~6~Serrano, Xaymara M. and Baums, Iliana B. and Smith, Tyler B. and Jones, Ross J. and Shearer, Tonya L. and Baker, Andrew C.~https://doi.org/10.1038/srep21619~~~~~Long distance dispersal and vertical gene flow in the Caribbean brooding coral Porites astreoides~N~~10211915~10211915~OSTI~2021-01-29 17:01:53.923~
Molecular Ecology~2016~25~Devlin‐Durante, M. K. and Miller, M. W. and Precht and Baums, W. F.~https://doi.org/10.1111/mec.13865~~~~~How old are you? Genet age estimates in a clonal animal~N~p. 5628-5646~10211884~10246888~OSTI~2023-09-18 00:02:34.240~
G3:Genes|Genomes|Genetics~2019~~Kitchen SA, Ratan A, Bedoya-Reina O, Burhans R, Fogarty ND, Miller W, and Baums IB~~~~~~A computer resource for analyzing genomic variants among threatened Acropora corals.~~~~~~2021-01-29 15:34:35.190~
Coral Reefs~2018~37~Miller, M. W. and Baums, I. B. and Pausch, R. E. and Bright, A. J. and Cameron, C. M. and Williams, D. E. and Moffitt, Z. J. and Woodley, C. M.~10.1007/s00338-017-1651-0~239-249~~~~Clonal structure and variable fertilization success in Florida Keys broadcast-spawning corals~~~~~~2019-10-29 13:25:15.813~
Scientific Reports~2020~10~Kitchen, S. A. and Von Kuster, G. and Kuntz, K. L. V. and Reich, H. G. and Miller, W. and Griffin, S. and Fogarty, N. D. and Baums, I. B.~10.1038/s41598-020-69101-z~17~~~~STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts~~~~~~2021-01-29 15:34:35.216~
Journal of Biogeography~2016~43~Hellberg, M. E. and Prada, C. and Tan, M. H. and Forsman, Z. H. and Baums, I. B.~10.1111/jbi.12792~2147-2159~~~~Getting a grip at the edge: recolonization and introgression in eastern Pacific Porites corals~~~~~~2019-10-29 13:25:15.790~
eLife~2018~7~Muller, Erinn M and Bartels, Erich and Baums, Iliana B~https://doi.org/10.7554/eLife.35066~~~~~Bleaching causes loss of disease resistance within the threatened coral species Acropora cervicornis~N~~10211904~10211904~OSTI~2021-01-29 17:01:53.580~
Genome Biology and Evolution~2016~8~Parkinson, John E. and Baumgarten, Sebastian and Michell, Craig T. and Baums, Iliana B. and LaJeunesse, Todd C. and Voolstra, Christian R.~10.1093/gbe/evw019~665-680~~~~Gene Expression Variation Resolves Species and Individual Strains among Coral-Associated Dinoflagellates within the Genus Symbiodinium~~~~~~2019-10-29 13:25:15.830~
Molecular Ecology~2016~25~Devlin-Durante, M. K. and Miller, M. W. and Precht, W. F. and Baums, I. B. and Caribbean Acropora Res, Grp~10.1111/mec.13865~5628-5646~~~~How old are you? Genet age estimates in a clonal animal~~~~~~2021-01-29 15:34:35.160~
G3&amp;#58; Genes|Genomes|Genetics~2019~9~Kitchen, Sheila. A. and Ratan, Aakrosh and Bedoya-Reina, Oscar C. and Burhans, Richard and Fogarty, Nicole D. and Miller, Webb and Baums, Iliana B.~https://doi.org/10.1534/g3.119.400125~~~~~Genomic Variants Among Threatened <i>Acropora</i> Corals~N~1633 to 1646~10211898~10211898~OSTI~2021-01-29 17:01:53.340~
PeerJ Preprints~2017~5~Parkinson, John E. and Bartels, Erich and Devlin-Durante, Meghann K. and Lustic, Caitlin and Nedimyer, Ken and Schopmeyer, Stephanie and Lirman, Diego and LaJeunesse, Todd C. and Baums, Iliana B.~10.7287/peerj.preprints.3158v1~e3158v1~~~~Extensive transcriptional variation poses a challenge to thermal stress biomarker development for endangered corals~~~~~~2019-10-29 13:25:15.826~
Integrative and Comparative Biology~2018~58~Kitchen, S. A. and Von Kuster, G. and Miller, W. and Baums, I. B.~1540-7063~E353-E353~~~~STAG: Standard Tools for Acroporid Genotyping~~~~~~2019-10-29 13:25:15.800~
Molecular Ecology~2019~28~Durante, Meghann K. and Baums, Iliana B. and Williams, Dana E. and Vohsen, Sam and Kemp, Dustin W.~10.1111/mec.15140~3208-3224~~~~What drives phenotypic divergence among coral clonemates of Acropora palmata?~~~~~~2019-10-29 13:25:15.786~
G3: Genes|Genomes|Genetics~2019~9~Kitchen, Sheila A. and Ratan, Aakrosh and Bedoya-Reina, Oscar C. and Burhans, Richard and Fogarty, Nicole D. and Miller, Webb and Baums, Iliana B.~10.1534/g3.119.400125~g3.400125~~~~Genomic Variants Among Threatened Acropora Corals~~~~~~2019-10-29 13:25:15.803~
Ecol Appl~2019~0~Baums, I. B. and Baker, A. C. and Davies, S. W. and Grottoli, A. G. and Kenkel, C. D. and Kitchen, S. A. and Kuffner, I. B. and LaJeunesse, T. C. and Matz, M. V. and Miller, M. W. and Parkinson, J. E. and Shantz, A. A.~10.1002/eap.1978~e01978~~~~Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic~~~~~~2019-10-29 13:25:15.730~
Nature Communications~2016~7~Wood, S. and Baums, I. B. and Paris, C. B. and Ridgwell, A. and Kessler, W. S. and Hendy, E. J.~https://doi.org/10.1038/ncomms12571~~~~~El Niño and coral larval dispersal across the eastern Pacific marine barrier~N~~10211916~10211916~OSTI~2021-01-29 17:01:53.863~
Scientific Reports~2020~10~Kitchen, S. A. and Von Kuster, G. and Kuntz, K. L. Vasquez and Reich, H. G. and Miller, W. and Griffin, S. and Fogarty, Nicole D. and Baums, I. B.~https://doi.org/10.1038/s41598-020-69101-z~~~~~STAGdb: a 30K SNP genotyping array and Science Gateway for Acropora corals and their dinoflagellate symbionts~N~~10211901~10175790~OSTI~2023-10-05 00:00:19.830~
Coral Reefs~2017~36~Irwin, A. and Greer, L. and Humston, R. and Devlin-Durante, M. and Cabe, P. and Lescinsky, H. and Wirth, K. and Curran, H. A. and Baums, I. B.~10.1007/s00338-017-1602-9~1111-1120~~~~Age and intraspecific diversity of resilient Acropora communities in Belize~~~~~~2021-01-29 15:34:35.183~
Molecular Ecology~2019~28~Durante, Meghann K. and Baums, Iliana B. and Williams, Dana E. and Vohsen, Sam and Kemp, Dustin W.~https://doi.org/10.1111/mec.15140~~~~~What drives phenotypic divergence among coral clonemates of <i>Acropora palmata</i> ?~N~p. 3208-3224~10211885~10460436~OSTI~2023-09-10 04:10:44.63~
PLoS ONE~2016~11~Cardona, Yuley and Ruiz-Ramos, Dannise V. and Baums, Iliana B. and Bracco, Annalisa~10.1371/journal.pone.0156257~e0156257~~~~Potential Connectivity of Coldwater Black Coral Communities in the Northern Gulf of Mexico~~~~~~2019-10-29 13:25:15.740~
Frontiers in Marine Science~2020~7~Rodríguez-Casariego, Javier A. and Mercado-Molina, Alex E. and Garcia-Souto, Daniel and Ortiz-Rivera, Ivanna M. and Lopes, Christian and Baums, Iliana B. and Sabat, Alberto M. and Eirin-Lopez, Jose M.~https://doi.org/10.3389/fmars.2020.560424~~~~~Genome-Wide DNA Methylation Analysis Reveals a Conserved Epigenetic Response to Seasonal Environmental Variation in the Staghorn Coral Acropora cervicornis~N~~10211914~10211914~OSTI~2021-01-29 17:01:50.130~
Elife~2018~7~Muller, E. M. and Bartels, E. and Baums, I. B.~10.7554/eLife.35066~20~~~~Bleaching causes loss of disease resistance within the threatened coral species Acropora cervicornis~~~~~~2021-01-29 15:34:35.226~