Principal Investigator: Debashish Bhattacharya (Rutgers University New Brunswick)
Science advances~2021~7~Amanda Williams, Eric N.~https://doi.org/doi:10.1126/sciadv.abd4210~~~~~Metabolomic shifts associated with heat stress in coral holobionts~~eabd4210~10229604~10229604~OSTI~2022-06-21 13:00:47.213~
BMC biology~2021~19~Raúl A. González-Pech, Timothy G.~https://doi.org/doi: 10.1186/s12915-021-00994-6~~~~~Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium~~73~10229606~10229606~OSTI~2022-06-21 13:00:47.223~
Scientific reports~2020~10~Shah, S. and Chen, Y. and Bhattacharya, D. and Chan, C. X.~https://doi.org/10.1038/s41598-020-66429-4~~~~~Sex in Symbiodiniaceae dinoflagellates: genomic evidence for independent loss of the canonical synaptonemal complex~~9792~10166064~10166064~OSTI~2022-06-21 13:00:47.253~
Scientific reports~2019~9~Shumaker, A. and Putnam, H. M. and Qiu, H. and Price, D. C. and Zelzion, E. and Harel, A. and Wagner, N. E. and Gates, R. D. and Yoon, H. S. and Bhattacharya, D.~~~~~~Genome analysis of the rice coral Montipora capitata~~2571~10166069~10166069~OSTI~2022-06-21 13:00:47.263~
Trends in genetics~2020~36~Cleves, P. A. and Shumaker, A. and Lee, J. and Putnam, H. M. and Bhattacharya, D.~~~~~~nknown to Known: Advancing Knowledge of Coral Gene Function~~93-104~10166049~10166049~OSTI~2022-06-21 13:00:47.266~
PeerJ~2021~9~Williams, Amanda and Pathmanathan, Jananan S. and Stephens, Timothy G. and Su, Xiaoyang and Chiles, Eric N. and Conetta, Dennis and Putnam, Hollie M. and Bhattacharya, Debashish~https://doi.org/10.7717/peerj.12335~~~~~Multi-omic characterization of the thermal stress phenome in the stony coral <i>Montipora capitata</i>~~e12335~10331072~10331072~OSTI~2022-06-07 21:03:28.176~
Microorganisms~2022~10~Chen, Yibi and Shah, Sarah and Dougan, Katherine E. and van Oppen, Madeleine J. and Bhattacharya, Debashish and Chan, Cheong Xin~https://doi.org/10.3390/microorganisms10081662~~~~~Improved Cladocopium goreaui Genome Assembly Reveals Features of a Facultative Coral Symbiont and the Complex Evolutionary History of Dinoflagellate Genes~~1662~10374200~10374200~OSTI~2022-10-18 21:03:31.603~
Limnology and Oceanography~2022~67~Bhattacharya, Debashish and Stephens, Timothy G. and Tinoco, Amanda I. and Richmond, Robert H. and Cleves, Phillip A.~https://doi.org/10.1002/lno.12181~~~~~Life on the edge: Hawaiian model for coral evolution~~p. 1976-1985~10374197~10371009~OSTI~2023-08-24 04:13:22.793~
Genome Biology and Evolution~2023~15~Stephens, Timothy G and Strand, Emma L and Putnam, Hollie M and Bhattacharya, Debashish~https://doi.org/10.1093/gbe/evad149~~~~~Ploidy Variation and Its Implications for Reproduction and Population Dynamics in Two Sympatric Hawaiian Coral Species~N~~10472749~10472749~OSTI~2023-11-06 08:23:43.976~
Genome biology and evolution~2020~12~Shoguchi, E. and Yoshioka, Y. and Shinzato, C. and Arimoto, A. and Bhattacharya, D. and Satoh, N.~https://doi.org/10.1093/gbe/evaa042~~~~~Correlation between Organelle Genetic Variation and RNA Editing in Dinoflagellates Associated with the Coral Acropora digitifera~~203-209~10166062~10166062~OSTI~2022-06-21 13:00:47.240~
Trends in ecology evolution~2019~34~González-Pech, R. A. and Bhattacharya, D. and Ragan, M. A. and Chan, C. X.~https://doi.org/10.1016/j.tree.2019.04.010~~~~~Genome Evolution of Coral Reef Symbionts as Intracellular Residents~~799-805~10166053~10166053~OSTI~2022-06-21 13:00:47.236~
Virus Evolution~2022~8~Benites, L Felipe and Stephens, Timothy G and Bhattacharya, Debashish~https://doi.org/10.1093/ve/veac101~~~~~Multiple waves of viral invasions in Symbiodiniaceae algal genomes~N~~10427333~10427333~OSTI~2023-06-30 12:15:37.586~
Trends in Microbiology~2022~~Dougan, Katherine E. and González-Pech, Raúl A. and Stephens, Timothy G. and Shah, Sarah and Chen, Yibi and Ragan, Mark A. and Bhattacharya, Debashish and Chan, Cheong Xin~https://doi.org/10.1016/j.tim.2022.02.001~~~~~Genome-powered classification of microbial eukaryotes: focus on coral algal symbionts~~~10331095~10331095~OSTI~2022-06-07 21:03:20.963~
Frontiers in Plant Science~2022~13~Lo, Rosalyn and Dougan, Katherine E. and Chen, Yibi and Shah, Sarah and Bhattacharya, Debashish and Chan, Cheong Xin~https://doi.org/10.3389/fpls.2022.815714~~~~~Alignment-Free Analysis of Whole-Genome Sequences From Symbiodiniaceae Reveals Different Phylogenetic Signals in Distinct Regions~~~10331085~10331085~OSTI~2022-06-07 21:03:18.323~
BMC biology~2020~18~Stephens, T. G. and González-Pech, R. A. and Cheng, Y. and Mohamed, A. R. and Burt, D. W. and Bhattacharya, D. and Ragan, M. A. and Chan, C. X.~https://doi.org/10.1186/s12915-020-00782-8~~~~~Genomes of the dinoflagellate Polarella glacialis encode tandemly repeated single exon genes with adaptive functions~~56~10166067~10166067~OSTI~2022-06-21 13:00:47.250~
Frontiers in Marine Science~2022~9~Chiles, Eric N. and Huffmyer, Ariana S. and Drury, Crawford and Putnam, Hollie M. and Bhattacharya, Debashish and Su, Xiaoyang~https://doi.org/10.3389/fmars.2022.1035523~~~~~Stable isotope tracing reveals compartmentalized nitrogen assimilation in scleractinian corals~N~~10427337~10427337~OSTI~2023-06-30 12:31:51.930~
BMC Biology~2021~19~González-Pech, Raúl A. and Stephens, Timothy G. and Chen, Yibi and Mohamed, Amin R. and Cheng, Yuanyuan and Shah, Sarah and Dougan, Katherine E. and Fortuin, Michael D. and Lagorce, Rémi and Burt, David W. and Bhattacharya, Debashish and Ragan, Mark A. an~https://doi.org/10.1186/s12915-021-00994-6~~~~~Comparison of 15 dinoflagellate genomes reveals extensive sequence and structural divergence in family Symbiodiniaceae and genus Symbiodinium~~~10331077~10331077~OSTI~2022-06-07 21:03:23.550~
PeerJ~2020~8~Julia Van Etten, Alexander Shumaker~https://doi.org/10.7717/peerj.9739~~~~~Transcriptome analysis provides a blueprint of coral egg and sperm functions~~e9739~10229605~10229605~OSTI~2022-06-21 13:00:47.216~