Dataset: Proteomic data of dilution series of bacteria and diatoms using MS.

Version (2017-11-13)Dataset Type:experimental

Principal Investigator: Brook L. Nunn (University of Washington)

Co-Principal Investigator: Rodger Harvey (Old Dominion University)

Co-Principal Investigator: William S. Noble (University of Washington)

BCO-DMO Data Manager: Megan Switzer (Woods Hole Oceanographic Institution)

Project: Collaborative Research: Proteins as functional biomarkers: integrating organic characterization with proteomics to track routes for carbon and nitrogen recycling and preservation (Proteins as Biomarkers)

Cite Dataset

To mimic a complex marine sample, a dilution series of R. pomeroyi and T. pseudonana was created at different cellular ratios. These mixtures were filtered and proteins were extracted from the filter for tryptic digestion and LC-MS/MS analysis.

Biological fractions were lysed, digested and analyzed using proteomic mass spectrometry.

Data are available for download at the EBI PRIDE Archive.
Homepage: https://www.ebi.ac.uk/pride/archive
Project URL: https://www.ebi.ac.uk/pride/archive/projects/PXD004758
Data URL: https://www.ebi.ac.uk/pride/archive/projects/PXD004758/files

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Related Publications

No Related Publications

Nunn, B. L., Noble, W. S., Harvey, R. (2017) Proteomic data of dilution series of bacteria and diatoms using MS.. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version ) Version Date 2017-11-13 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/719080 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation