Dataset: Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015.

Final no updates expectedDOI: 10.1575/1912/bco-dmo.762497.1Version 1 (2019-03-18)Dataset Type:Other Field Results

Principal Investigator, Contact: Stephen R. Palumbi (Stanford University)

Co-Principal Investigator: Luke Thomas (University of Western Australia)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Ecological, evolutionary and physiological responses of corals to a mass bleaching event in American Samoa (Bleaching American Samoa)

Abstract

Coral colony genetic sequence accessions for samples collected from the lagoon environment of Ofu Island in the National Park of American Samoa between 2011 and 2015.

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Coral colony genetic sequence accessions for samples collected from the lagoon environment of Ofu Island in the National Park of American Samoa between 2011 and 2015.  All data and samples were collected at depths less than 3.0m.

This dataset includes all sequence data accession numbers for the publication Thomas & Palumbi (2017) housed at The National Center for Biotechnology Information under BioProject PRJNA522016 (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA522016).  

Related Datasets

Different Version
Dataset: https://doi.org/10.5061/dryad.3444s
Thomas, L., &amp; Palumbi, S. R. (2017). <i>Data from: The genomics of recovery from coral bleaching</i> (Version 1) [Data set]. Dryad Digital Repository. https://doi.org/10.5061/dryad.3444s

Related Publications

Results
Thomas, L., & Palumbi, S. R. (2017). The genomics of recovery from coral bleaching. Proceedings of the Royal Society B: Biological Sciences, 284(1865), 20171790. doi:10.1098/rspb.2017.1790
Methods
Barshis, D. J., Ladner, J. T., Oliver, T. A., Seneca, F. O., Traylor-Knowles, N., & Palumbi, S. R. (2013). Genomic basis for coral resilience to climate change. Proceedings of the National Academy of Sciences, 110(4), 1387–1392. doi:10.1073/pnas.1210224110
Methods
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., … Homer, N. (2009). The Sequence Alignment/Map format and SAMtools. Bioinformatics, 25(16), 2078–2079. doi:10.1093/bioinformatics/btp352
Methods
Love, M. I., Huber, W., & Anders, S. (2014). Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology, 15(12). doi:10.1186/s13059-014-0550-8
Software
Langmead, B., & Salzberg, S. L. (2012). Fast gapped-read alignment with Bowtie 2. Nature Methods, 9(4), 357–359. doi:10.1038/nmeth.1923

Thomas, L. (2019) Coral colony genetic sequence accession numbers for samples collected from the lagoon environment of Ofu Island, American Samoa between 2011 and 2015.. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2019-03-18 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.762497.1 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation