Dataset: 16S rRNA gene amplicon sequences from cathodic poised potential experiments with subsurface crustal samples from CORK borehole observatories at North Pond on the Mid-Atlantic Ridge during R/V Atlantis cruise AT39-01

Name: 16S rRNA gene amplicon sequences from cathodic poised potential experiments with subsurface crustal samples from CORK borehole observatories at North Pond on the Mid-Atlantic Ridge during R/V Atlantis cruise AT39-01
Published: 2019-10-30
Keywords: oceans

Release Date:2020-02-01Final no updates expectedVersion 1 (2019-10-30)Dataset Type:Cruise ResultsDataset Type:experimental

Principal Investigator: Beth N. Orcutt (Bigelow Laboratory for Ocean Sciences)

Co-Principal Investigator: Timothy D'Angelo (Bigelow Laboratory for Ocean Sciences)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Center for Dark Energy Biosphere Investigations (C-DEBI)

Project: Collaborative Research: Completing North Pond Borehole Experiments to Elucidate the Hydrology of Young, Slow-Spread Crust (North Pond 2017)

Abstract

16S rRNA gene amplicon sequences from cathodic poised potential experiments with subsurface crustal samples from CORK borehole observatories at North Pond on the Mid-Atlantic Ridge during R/V Atlantis cruise AT39-01. Illumina amplicon sequence data (V4-V5 region of the 16S rRNA gene) is publicly available through NCBI Sequence Read Archive under BioProject PRJNA564565 samples SAMN12723345-SAMN12723415. BioProject PRJNA564565: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA564565

Cite Dataset

Spatial Extent: N:22.80 E:-46.05 S:22.76 W:-46.08
Temporal Extent: 2018-01-03 - 2019-01-10

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Citations

Illumina amplicon sequence data (V4-V5 region of the 16S rRNA gene) is publicly available through NCBI Sequence Read Archive under BioProject PRJNA564565 samples SAMN12723345-SAMN12723415.
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA564565

These results were published in Jones et al. (2020).

Related datasets from the same experiment:
AT39-01 CathodicEET Chronoamperometry: https://www.bco-dmo.org/dataset/780127
AT39-01 CathodicEET CyclicVoltametry: https://www.bco-dmo.org/dataset/780248
AT39-01 CathodicEET SEM: https://www.bco-dmo.org/dataset/780261
AT39-01 CathodicEET Experimental Metadata:
https://www.bco-dmo.org/dataset/780225

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Results

Jones, R. M., D’Angelo, T., & Orcutt, B. N. (2020). Using Cathodic Poised Potential Experiments to Investigate Extracellular Electron Transport in the Crustal Deep Biosphere of North Pond, Mid-Atlantic Ridge. Frontiers in Environmental Science, 8. doi:10.3389/fenvs.2020.00011

Methods

DAngelo, T. (2018). DNA Extraction using FastDNA Spinkit for Soil with PolyA Modifictaion v1 (protocols.io.ur8ev9w). Protocols.io. doi:10.17504/protocols.io.ur8ev9w

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Dataset: 16S rRNA gene amplicon sequences from cathodic poised potential experiments with subsurface crustal samples from CORK borehole observatories at North Pond on the Mid-Atlantic Ridge during R/V Atlantis cruise AT39-01

Release Date:2020-02-01Final no updates expectedVersion 1 (2019-10-30)Dataset Type:Cruise ResultsDataset Type:experimental

Principal Investigator: Beth N. Orcutt (Bigelow Laboratory for Ocean Sciences)

Co-Principal Investigator: Timothy D'Angelo (Bigelow Laboratory for Ocean Sciences)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Center for Dark Energy Biosphere Investigations (C-DEBI)

Project: Collaborative Research: Completing North Pond Borehole Experiments to Elucidate the Hydrology of Young, Slow-Spread Crust (North Pond 2017)

Abstract

Cite Dataset

Spatial Extent: N:22.80 E:-46.05 S:22.76 W:-46.08
Temporal Extent: 2018-01-03 - 2019-01-10

XXX

Views

XX

Downloads

X

Citations

These results were published in Jones et al. (2020).

Related Datasets

No Related Datasets

Related Publications

Results

Methods

DAngelo, T. (2018). DNA Extraction using FastDNA Spinkit for Soil with PolyA Modifictaion v1 (protocols.io.ur8ev9w). Protocols.io. doi:10.17504/protocols.io.ur8ev9w

File(s)	Type	Description	Action

Supplemental File(s)	Type	Description	Action
northpond-1.0.zip (2.39 KB)	ZIP Archive (ZIP)	North Pond FLOCs and Electrochemistry The .RMD file can be downloaded and ran with the fastq files in NCBI Sequence Read Archive BioProject PRJNA564565 to recreate the ASVs used for the North Pond Electrochemistry and FLOCs experiments. The .zip file contains github release v1.0 from https://github.com/BCODMO/northpond/tree/v1.0 which was forked from https://github.com/orcuttlab/northpond/commit/73aeab07d94d48c1b61ee50310fbb5a34bb60375 to BCO-DMO for curation purposes.	Download

File(s)	Type	Description	Action

Supplemental File(s)	Type	Description	Action
northpond-1.0.zip (2.39 KB)	ZIP Archive (ZIP)	North Pond FLOCs and Electrochemistry The .RMD file can be downloaded and ran with the fastq files in NCBI Sequence Read Archive BioProject PRJNA564565 to recreate the ASVs used for the North Pond Electrochemistry and FLOCs experiments. The .zip file contains github release v1.0 from https://github.com/BCODMO/northpond/tree/v1.0 which was forked from https://github.com/orcuttlab/northpond/commit/73aeab07d94d48c1b61ee50310fbb5a34bb60375 to BCO-DMO for curation purposes.	Download

Dataset: 16S rRNA gene amplicon sequences from cathodic poised potential experiments with subsurface crustal samples from CORK borehole observatories at North Pond on the Mid-Atlantic Ridge during R/V Atlantis cruise AT39-01

Principal Investigator: Beth N. Orcutt (Bigelow Laboratory for Ocean Sciences)

Co-Principal Investigator: Timothy D'Angelo (Bigelow Laboratory for Ocean Sciences)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Center for Dark Energy Biosphere Investigations (C-DEBI)

Project: Collaborative Research: Completing North Pond Borehole Experiments to Elucidate the Hydrology of Young, Slow-Spread Crust (North Pond 2017)

Abstract

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Files

Supplemental Files

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Related Publications

Dataset: 16S rRNA gene amplicon sequences from cathodic poised potential experiments with subsurface crustal samples from CORK borehole observatories at North Pond on the Mid-Atlantic Ridge during R/V Atlantis cruise AT39-01

Principal Investigator: Beth N. Orcutt (Bigelow Laboratory for Ocean Sciences)

Co-Principal Investigator: Timothy D'Angelo (Bigelow Laboratory for Ocean Sciences)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Center for Dark Energy Biosphere Investigations (C-DEBI)

Project: Collaborative Research: Completing North Pond Borehole Experiments to Elucidate the Hydrology of Young, Slow-Spread Crust (North Pond 2017)

Abstract

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Files

Supplemental Files

Related Datasets

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