Dataset: Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, station BATS, and station ALOHA between 2000 and 2018

Name: Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, station BATS, and station ALOHA between 2000 and 2018
Published: 2020-01-10
Keywords: Trichodesmium, metaproteomics, oceans

Final no updates expectedDOI: 10.26008/1912/bco-dmo.787078.1Version 1 (2020-01-10)Dataset Type:Cruise Results

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

Student: Noelle Held (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Marine Microbiology Initiative (MMI)

Project: Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim)

Project: New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms (MM Proteins and Organics Tech)

Project: Marine Microbial Investigator Award: Investigator Mak Saito (MM Saito)

Project: Collaborative Research: Evolutionary, biochemical and biogeochemical responses of marine cyanobacteria to warming and iron limitation interactions (Cyanobacteria Warming Responses)

Abstract

Cite Dataset

Spatial Extent: N:23.22 E:-21.59 S:0.17 W:-158.00
Temporal Extent: 2000-07-27 - 2018-03-11

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Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, at station BATS (Bermuda Atlantic Time-series Study), and station ALOHA (A Long-Term Oligotrophic Habitat Assessment) between 2000 and 2018. These data were published in Held et al. (2020).

The mass spectrometry proteomics data have been deposited to the ProteomeXchange Consortium via the PRIDE [1] partner repository with the dataset identifier PXD016225 and 10.6019/PXD016225 but are not yet public.

Project Name: Trichodesmium field metaproteomes

Project accession: PXD016225

Project DOI: 10.6019/PXD016225

An alternative form of these data are available as dataset:
"Trichodesmium field metaproteomes - protein spectral counts" https://www.bco-dmo.org/dataset/787147

Related Dataset:
Trichodesmium sample provenance: https://www.bco-dmo.org/dataset/787093 - Sample provenance file, which includes sample locations, filter sizes

Related Datasets

No Related Datasets

Related Publications

General

Held, N. A., Webb, E. A., McIlvin, M. M., Hutchins, D. A., Cohen, N. R., Moran, D. M., … Saito, M. A. (2020). Co-occurrence of Fe and P stress in natural populations of the marine diazotroph Trichodesmium. doi:10.5194/bg-2019-493

Methods

Saito, M. A., McIlvin, M. R., Moran, D. M., Goepfert, T. J., DiTullio, G. R., Post, A. F., & Lamborg, C. H. (2014). Multiple nutrient stresses at intersecting Pacific Ocean biomes detected by protein biomarkers. Science, 345(6201), 1173–1177. https://doi.org/10.1126/science.1256450

Methods

Shih, P. M., Wu, D., Latifi, A., Axen, S. D., Fewer, D. P., Talla, E., … Kerfeld, C. A. (2012). Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proceedings of the National Academy of Sciences, 110(3), 1053–1058. doi:10.1073/pnas.1217107110

Related Research

ProteomeXchange dataset. (n.d.). doi:10.6019/pxd016225

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Dataset: Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, station BATS, and station ALOHA between 2000 and 2018

Final no updates expectedDOI: 10.26008/1912/bco-dmo.787078.1Version 1 (2020-01-10)Dataset Type:Cruise Results

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

Student: Noelle Held (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Marine Microbiology Initiative (MMI)

Project: Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim)

Project: New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms (MM Proteins and Organics Tech)

Project: Marine Microbial Investigator Award: Investigator Mak Saito (MM Saito)

Project: Collaborative Research: Evolutionary, biochemical and biogeochemical responses of marine cyanobacteria to warming and iron limitation interactions (Cyanobacteria Warming Responses)

Abstract

Cite Dataset

Spatial Extent: N:23.22 E:-21.59 S:0.17 W:-158.00
Temporal Extent: 2000-07-27 - 2018-03-11

XXX

Views

XX

Downloads

X

Citations

Project Name: Trichodesmium field metaproteomes

Project accession: PXD016225

Project DOI: 10.6019/PXD016225

An alternative form of these data are available as dataset:
"Trichodesmium field metaproteomes - protein spectral counts" https://www.bco-dmo.org/dataset/787147

Related Dataset:
Trichodesmium sample provenance: https://www.bco-dmo.org/dataset/787093 - Sample provenance file, which includes sample locations, filter sizes

Related Datasets

No Related Datasets

Related Publications

General

Methods

Related Research

ProteomeXchange dataset. (n.d.). doi:10.6019/pxd016225

Dataset: Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, station BATS, and station ALOHA between 2000 and 2018

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

Student: Noelle Held (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Marine Microbiology Initiative (MMI)

Project: Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim)

Project: New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms (MM Proteins and Organics Tech)

Project: Marine Microbial Investigator Award: Investigator Mak Saito (MM Saito)

Project: Collaborative Research: Evolutionary, biochemical and biogeochemical responses of marine cyanobacteria to warming and iron limitation interactions (Cyanobacteria Warming Responses)

Abstract

XXX

XX

X

Files

Related Datasets

Related Publications

Dataset: Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, station BATS, and station ALOHA between 2000 and 2018

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

Student: Noelle Held (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Marine Microbiology Initiative (MMI)

Project: Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim)

Project: New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms (MM Proteins and Organics Tech)

Project: Marine Microbial Investigator Award: Investigator Mak Saito (MM Saito)

Project: Collaborative Research: Evolutionary, biochemical and biogeochemical responses of marine cyanobacteria to warming and iron limitation interactions (Cyanobacteria Warming Responses)

Abstract

XXX

XX

X

Files

Related Datasets

Related Publications

Dataset: Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, station BATS, and station ALOHA between 2000 and 2018

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

Student: Noelle Held (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Marine Microbiology Initiative (MMI)

Project: Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim)

Project: New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms (MM Proteins and Organics Tech)

Project: Marine Microbial Investigator Award: Investigator Mak Saito (MM Saito)

Project: Collaborative Research: Evolutionary, biochemical and biogeochemical responses of marine cyanobacteria to warming and iron limitation interactions (Cyanobacteria Warming Responses)

Abstract

Metadata

XXX

XX

X

Files

Related Datasets

Related Publications

Dataset: Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, station BATS, and station ALOHA between 2000 and 2018

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

Student: Noelle Held (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Program: Marine Microbiology Initiative (MMI)

Project: Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim)

Project: New technology for high resolution analysis of proteins and other organic materials produced by marine microorganisms (MM Proteins and Organics Tech)

Project: Marine Microbial Investigator Award: Investigator Mak Saito (MM Saito)

Project: Collaborative Research: Evolutionary, biochemical and biogeochemical responses of marine cyanobacteria to warming and iron limitation interactions (Cyanobacteria Warming Responses)

Abstract

Metadata

XXX

XX

X

Files

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Related Publications