An eddy covariance system, known as ECHOES, was deployed at three sites offshore of Key Largo, Florida during June 2018. The ECHOES systems logged the three-dimensional velocity, depth, O2 optode, pH sensor, and triaxial Inertial Measurement Unit. A separate frame at each site contained a photosynthetically active radiation (PAR) sensor and a Seabird SeapHOx, measuring salinity, temperature, depth, O2, and pH. This dataset contains the spectral analyses (power spectra and cross power spectral density (CPSD)) of high-frequency data (turbulence; momentum, oxygen and hydrogen ion fluxes) from two hour-long periods during a high-energy wave period (Hr 38) and a low-energy wave period (Hr 116).