| File(s) | Type | Description | Action |
|---|---|---|---|
| gom_cfin.tar.gz (85.53 GB) | GZIP (.gz) | This folder (gom_cfin) contains backward tracking individual-based runs for Wilkinson Basin (WB) copepod Calanus finmarchicus populations in the Gulf of Maine. The detailed description of modeling concepts, equations and interpretation can be found at: Ji, R., Z. Feng, B. T. Jones, C. Thompson, C. Chen, N. R. Record, and J. A. Runge. 2017. Coastal amplification of supply and transport (CAST): a new hypothesis about the persistence of Calanus finmarchicus in the Gulf of Maine. ICES Journal of Marine Science, https://doi.org/10.1093/icesjms/fsw253. There are 6 subfolders: fiscm: Individual-based model (IBM) source code (in Fortran 95) gom_hourly_example: One example of hourly hydrodynamic model output as forcing data for the FVCOM IBM model runs. The output can be recreated using model code provided. The full output is publicly available from a THREDDS server through the catalog http://ulysse2.whoi.edu:8080/thredds/catalog/data/gom_cfin/catalog.html in the 'gom3_hourly' subfolder. data_files: Model configuration code and auxiliary data for model runs, including grid information, coastal and bathymetry, and WB polygon location. depth_keeping: Depth-keeping model runs, including model setup. One example output netCDF file can be found at "depth_keeping/Year2012Gen2/WB_bit_20120930/example_output_file/fiscm_group_001.nc". The output can be recreated using model code provided. The full output is publicly available from a THREDDS server through the catalog http://ulysse2.whoi.edu:8080/thredds/catalog/data/gom_cfin/catalog.html in the 'depth_keeping' subfolder. Matlab_data: Model data generated after processing the raw model output netcdf file from depth_keeping folder. Matlab_scripts: Matlab codes for preparing model run files and postprocessing model output. | Download |
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