Version 1, which has been archived under DOI number 10.26008/1912/bco-dmo.845039.1, was supported by NSF awards OCE-1635913 and OCE-1635798 as part of the project "Collaborative Research: Viral Reefscapes: The Role of Viruses in Coral Reef Health, Disease, and Biogeochemical Cycling". Version 2 is a continuation or extension of the data in version 1. It was supported by NSF award OCE-1933165 as part of the project "RAPID: Ecosystem impact of a coral bleaching event: The role of coral exudates in shifting oligotrophic biogeochemistry and reef microbiomes."