Dataset: Physiology color score extracted from pictures taken during a thermal stress experiment using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i.

Name: Physiology color score extracted from pictures taken during a thermal stress experiment using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i.
Published: 2023-01-31
Keywords: oceans

Final no updates expectedDOI: 10.26008/1912/bco-dmo.884220.1Version 1 (2023-01-31)Dataset Type:experimental

Co-Principal Investigator: Hollie Putnam (University of Rhode Island)

Student: Emma Strand (University of Rhode Island)

BCO-DMO Data Manager: Karen Soenen (Woods Hole Oceanographic Institution)

Project: NSFOCE-BSF: COLLABORATIVE RESEARCH: Elucidating adaptive potential through coral holobiont functional integration (Holobiont Integration)

Abstract

Understanding the response of the coral holobiont to environmental change is crucial to inform conservation efforts. The most pressing problem is “coral bleaching,” usually precipitated by prolonged thermal stress. This dataset spans a five week thermal stress experiment in which images were taken of coral individuals and analyzed for a "color score".

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From the waters of Kāne‘ohe Bay, HI, four colonies of each coral species M. capitata and P. acuta were identified and collected under SAP 2019-60. Each of the four colonies for each species was fragmented into 30 pieces at the Hawaiʻi Institute of Marine Biology, located on Moku o Loʻe in Kāne‘ohe Bay, HI, and hot-glued to labeled plugs. (21N 157 W ; depth 1m).

Related Datasets

IsRelatedTo

Dataset: Thermal Stress Experiment: Experimental Tank Conditions
Relationship Description: Dataset is part of the same experiment.

Strand, E., Putnam, H. (2023) Experiment Tank Conditions during a thermal stress experiment using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-01-31 doi:10.26008/1912/bco-dmo.886196.1

IsRelatedTo

Dataset: Thermal Stress Experiment: Targeted Metabolites
Relationship Description: Dataset is part of the same experiment.

Strand, E., Putnam, H. (2023) Metabolomic data collected during a thermal stress experiment using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-01-31 doi:10.26008/1912/bco-dmo.886420.1

IsRelatedTo

Dataset: Thermal Stress Experiment: Untargeted Metabolites
Relationship Description: Dataset is part of the same experiment.

Strand, E., Putnam, H. (2023) Untargeted metabolomic data collected during a thermal stress experiment using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-01-31 doi:10.26008/1912/bco-dmo.886427.1

Related Publications

Methods

Edmunds, P. J., Gates, R. D., & Gleason, D. F. (2003). The tissue composition of Montastraea franksi during a natural bleaching event in the Florida Keys. Coral Reefs, 22(1), 54–62. https://doi.org/10.1007/s00338-003-0278-5

Software

Schneider, C. A., Rasband, W. S., & Eliceiri, K. W. (2012). NIH Image to ImageJ: 25 years of image analysis. Nature Methods, 9(7), 671–675. https://doi.org/10.1038/nmeth.2089

Software

Schneider, C. A., Rasband, W. S., ... (n.d.). ImageJ. US National Institutes of Health, Bethesda, MD, USA. Available from https://imagej.nih.gov/ij/

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Dataset: Physiology color score extracted from pictures taken during a thermal stress experiment using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i.

Final no updates expectedDOI: 10.26008/1912/bco-dmo.884220.1Version 1 (2023-01-31)Dataset Type:experimental

Co-Principal Investigator: Hollie Putnam (University of Rhode Island)

Student: Emma Strand (University of Rhode Island)

BCO-DMO Data Manager: Karen Soenen (Woods Hole Oceanographic Institution)

Project: NSFOCE-BSF: COLLABORATIVE RESEARCH: Elucidating adaptive potential through coral holobiont functional integration (Holobiont Integration)

Abstract

Cite Dataset

XXX

Views

XX

Downloads

X

Citations

Related Datasets

IsRelatedTo

Dataset: Thermal Stress Experiment: Experimental Tank Conditions
Relationship Description: Dataset is part of the same experiment.

IsRelatedTo

Dataset: Thermal Stress Experiment: Targeted Metabolites
Relationship Description: Dataset is part of the same experiment.

IsRelatedTo

Dataset: Thermal Stress Experiment: Untargeted Metabolites
Relationship Description: Dataset is part of the same experiment.

Related Publications

Methods

Software

Schneider, C. A., Rasband, W. S., & Eliceiri, K. W. (2012). NIH Image to ImageJ: 25 years of image analysis. Nature Methods, 9(7), 671–675. https://doi.org/10.1038/nmeth.2089

Software

Schneider, C. A., Rasband, W. S., ... (n.d.). ImageJ. US National Institutes of Health, Bethesda, MD, USA. Available from https://imagej.nih.gov/ij/

File(s)	Type	Description	Action
thermal_colorscore.csv (178.60 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 884220	Download

Supplemental File(s)	Type	Description	Action
Thermal_Stress_Experiment_Color_Score_Images_Emma_Strand.zip (286.59 MB)	ZIP Archive (ZIP)	Pictures of coral during a thermal stress experiment where physiology color score has been extracted from using ImageJ.	Download

File(s)	Type	Description	Action
thermal_colorscore.csv (178.60 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 884220	Download

Supplemental File(s)	Type	Description	Action
Thermal_Stress_Experiment_Color_Score_Images_Emma_Strand.zip (286.59 MB)	ZIP Archive (ZIP)	Pictures of coral during a thermal stress experiment where physiology color score has been extracted from using ImageJ.	Download

Dataset: Physiology color score extracted from pictures taken during a thermal stress experiment using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i.

Co-Principal Investigator: Hollie Putnam (University of Rhode Island)

Student: Emma Strand (University of Rhode Island)

BCO-DMO Data Manager: Karen Soenen (Woods Hole Oceanographic Institution)

Project: NSFOCE-BSF: COLLABORATIVE RESEARCH: Elucidating adaptive potential through coral holobiont functional integration (Holobiont Integration)

Abstract

Metadata

XXX

XX

X

Related Datasets

Related Publications

Dataset: Physiology color score extracted from pictures taken during a thermal stress experiment using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i.

Co-Principal Investigator: Hollie Putnam (University of Rhode Island)

Student: Emma Strand (University of Rhode Island)

BCO-DMO Data Manager: Karen Soenen (Woods Hole Oceanographic Institution)

Project: NSFOCE-BSF: COLLABORATIVE RESEARCH: Elucidating adaptive potential through coral holobiont functional integration (Holobiont Integration)

Abstract

Metadata

XXX

XX

X

Related Datasets

Related Publications