| File(s) | Type | Description | Action |
|---|---|---|---|
samples_and_accessions.csv (33.29 KB) | Comma Separated Values (.csv) | Sample and Accession information for nucleotide sequences of CsRV1 virus amplified from blue crabs (Callinectes sapidus). Parameters (Column name, description, units): Genbank_accession, NCBI Genbank accession identifier for the sequence collection_date, Date of collection in ISO 8601 format yyyy lat, Sample latitude, decimal degrees lon, Sample longitude, decimal degrees site, Site code (state or island) sample_name, Sample name mol_type, type (genomic RNA) virus_genome_segment, Virus genome segment number organism, organism host, Host taxon definition, accession definition | |
Concatenated_ORF_genome_alignment_3_30_2021.1.fa (434.37 KB) | FASTA | This file is a list of the concatenated sequences the protein coding regions each of the 12 segments of CsRV1. There are 22 individual genomes from different locations and dates. CsRV1 alignment and trees. Concatenated CsRV1 segments used for alignments in fasta format. Pairwise analyses and ML trees. These sequences are truncated relative to the full sequences in Genbank accessions KU311708 - KU311719. | |
| Supplemental File(s) | Type | Description | Action |
site_list.csv (612.00 B) | Comma Separated Values (.csv) | Site list containing the site code (State or Island), name of the location, and lat,lon in decimal degrees. |
Files
Filename: samples_and_accessions.csv (33.29 KB)
Type: Comma Separated Values (.csv)
Description: Sample and Accession information for nucleotide sequences of CsRV1 virus amplified from blue crabs (Callinectes sapidus). Parameters (Column name, description, units): Genbank_accession, NCBI Genbank accession identifier for the sequence collection_date, Date of collection in ISO 8601 format yyyy lat, Sample latitude, decimal degrees lon, Sample longitude, decimal degrees site, Site code (state or island) sample_name, Sample name mol_type, type (genomic RNA) virus_genome_segment, Virus genome segment number organism, organism host, Host taxon definition, accession definition
Type: Comma Separated Values (.csv)
Description: Sample and Accession information for nucleotide sequences of CsRV1 virus amplified from blue crabs (Callinectes sapidus). Parameters (Column name, description, units): Genbank_accession, NCBI Genbank accession identifier for the sequence collection_date, Date of collection in ISO 8601 format yyyy lat, Sample latitude, decimal degrees lon, Sample longitude, decimal degrees site, Site code (state or island) sample_name, Sample name mol_type, type (genomic RNA) virus_genome_segment, Virus genome segment number organism, organism host, Host taxon definition, accession definition
Filename: Concatenated_ORF_genome_alignment_3_30_2021.1.fa (434.37 KB)
Type: FASTA
Description: This file is a list of the concatenated sequences the protein coding regions each of the 12 segments of CsRV1. There are 22 individual genomes from different locations and dates. CsRV1 alignment and trees. Concatenated CsRV1 segments used for alignments in fasta format. Pairwise analyses and ML trees. These sequences are truncated relative to the full sequences in Genbank accessions KU311708 - KU311719.
Type: FASTA
Description: This file is a list of the concatenated sequences the protein coding regions each of the 12 segments of CsRV1. There are 22 individual genomes from different locations and dates. CsRV1 alignment and trees. Concatenated CsRV1 segments used for alignments in fasta format. Pairwise analyses and ML trees. These sequences are truncated relative to the full sequences in Genbank accessions KU311708 - KU311719.
Supplemental Files
Filename: site_list.csv (612.00 B)
Type: Comma Separated Values (.csv)
Description: Site list containing the site code (State or Island), name of the location, and lat,lon in decimal degrees.
Type: Comma Separated Values (.csv)
Description: Site list containing the site code (State or Island), name of the location, and lat,lon in decimal degrees.