Dataset: Reef seawater biogeochemistry data from samples collected in the Jardines de la Reina reef-system, Cuba in November of 2017

Final no updates expectedDOI: 10.26008/1912/bco-dmo.908026.1Version 1 (2023-10-26)Dataset Type:Other Field Results

Principal Investigator: Amy Apprill (Woods Hole Oceanographic Institution)

Co-Principal Investigator: Elizabeth Kujawinski (Woods Hole Oceanographic Institution)

Scientist, Contact: Laura Gray (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)


Project: Signature exometabolomes of Caribbean corals and influences on reef picoplankton (Coral Exometabolomes)

Project: RAPID/MRI: Acquisition of a Triple-Quad Mass Spectrometer for Quantitative Identification of Dispersants and Water-Soluble Oil in the Gulf of Mexico (RAPID Mass Spec for Dispersants)


Abstract

Reef depth and reef surface seawater samples were collected from reefs in Jardines de la Reina and subjected to targeted and untargeted liquid chromatography mass spectrometry (LC-MS) methods in addition to a suite of biogeochemical measurements (inorganic and organic nutrient concentrations, microbial cell abundances, chlorophyll a concentrations, and physicochemical properties). Raw and .mzML data files from the LC-MS methods are located at MetaboLights database, using accession number MTBLS...

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Funding Description:

Dalio Foundation (now ‘OceanX’) (awarded to Amy Apprill)
National Science Foundation (OCE-1736288) (awarded to Amy Apprill)

Mass spectrometry samples were analyzed at the WHOI FT-MS Users’ Facility using instruments funded by the National Science Foundation (grant OCE-1058448 awarded to Elizabeth B. Kujawinski and Melissa Kido Soule) and the Simons Foundation (Award ID #509042, awarded to Elizabeth B. Kujawinski)


Related Datasets

IsRelatedTo

Dataset: Extracellular reef seawater metabolites from the Jardines de la Reina reef-system
Relationship Description: Data from the same study (Metabolights study id MTBLS1820). In both the biogeochemistry and metabolite datasets, water samples were collected from surface and benthic depths from the same reefs. Column "reef" in both datasets indicates the reef site identifier and reef sample depth. See methods for details of how each water sample was collected.
Apprill, A., Kujawinski, E., Gray, L. (2023) Sampling and accession information for extracellular reef seawater metabolites collected from the Jardines de la Reina reef-system, Cuba in November of 2017. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2023-10-20 doi:10.26008/1912/bco-dmo.843270.1
IsSupplementTo

Dataset: https://www.ebi.ac.uk/metabolights/MTBLS1820/
Weber, L., Apprill, A. (2020) MTBLS1820: Extracellular reef metabolites across the protected Jardines de la Reina, Cuba reef-system. MetaboLights Database. Released 2020-11-30. Available at https://www.ebi.ac.uk/metabolights/MTBLS1820/

Related Publications

Results

Weber, L., Armenteros, M., Kido Soule, M., Longnecker, K., Kujawinski, E. B., & Apprill, A. (2020). Extracellular Reef Metabolites Across the Protected Jardines de la Reina, Cuba Reef System. Frontiers in Marine Science, 7. doi:10.3389/fmars.2020.582161
Methods

Apprill, A., & Rappé, M. (2011). Response of the microbial community to coral spawning in lagoon and reef flat environments of Hawaii, USA. Aquatic Microbial Ecology, 62(3), 251–266. doi:10.3354/ame01471
Methods

Hansell, D. A., & Carlson, C. A. (2001). Biogeochemistry of total organic carbon and nitrogen in the Sargasso Sea: control by convective overturn. Deep Sea Research Part II: Topical Studies in Oceanography, 48(8-9), 1649–1667. doi:10.1016/s0967-0645(00)00153-3
Software

FlowJo software version 6.4.7 (2005, November 16). Tree Star, Inc., Ashland, OR, USA. Retrieved from http://v9docs.flowjo.com/html/version.html#6.4.7