| File(s) | Type | Description | Action |
|---|---|---|---|
914459_v1_relative_gene_expression.csv (13.06 MB) | Comma Separated Values (.csv) | Primary data file for dataset ID 914459, version 1 Relative gene expression given in log2(RPKM +1) for all transcripts based on RNA-Seq data mapped against a reference transcriptome. | |
| Supplemental File(s) | Type | Description | Action |
supplemental_files/unpivoted_relative_gene_expression.csv (230.86 MB) | Comma Separated Values (.csv) | See the supplemental file "Metadata table parameter definitions", metadata_table_parameter_definitions.csv, for definitions of parameters included in this file that are not listed as parameters on this dataset page. Columns: seq_id, Genbank_Accession, Organism_Name, Station, Latitude, Longitude, Collection_date, Year, Month, Day, Depth_range, Replicate, relative_expression, week_after_molting_to_CV, feeding_protocol | |
supplemental_files/metadata_table_with_ncbi_accessions.csv (10.55 KB) | Comma Separated Values (.csv) | See the supplemental file "Metadata table parameter definitions", metadata_table_parameter_definitions.csv, for definitions of parameters included in this metadata table. Columns: Replicate, Organism_Name, Station, Latitude, Longitude, Collection_date, Year, Month, Day, Depth_range, week_after_molting_to_CV, feeding_protocol, BioProject, Study_Accession, Study_Title, Experiment_Accession, Experiment_Title, BioSample, Sample_Accession | |
species_list.csv (211.00 B) | Comma Separated Values (.csv) | Species WoRMS taxonomy table with columns: ScientificName, AphiaID, LSID, Authority, Class, Order, Family, Genus, Species | |
seq_id_genbank_accession_cross_reference.csv (1.96 MB) | Comma Separated Values (.csv) | Cross-reference between Trinity IDs and Genbank accession numbers Columns: seq_id, Genbank_accession See the parameters section of this dataset for definitions of seq_id and Genbank_accession parameters used in this file. | |
metadata_table_parameter_definitions.csv (1.54 KB) | Comma Separated Values (.csv) | This file contains parameter definitions for the supplemental file "Metadata table including NCBI accessions", metadata_table_with_ncbi_accessions.csv Columns: suppliedName, description, suppliedUnits, no_data_value, bcodmo_standard_parameter_name, Datatype, Format suppliedName = Supplied Name description = parameter description suppliedUnits = parameter units no_data_value = fill value for no data bcodmo_standard_parameter_name = BCO-DMO standard parameter name DataType = parameter data type Format = date format if the parameter data type is date | |
differentially_expressed_genes.csv (477.77 KB) | Comma Separated Values (.csv) | List of differentially expressed genes (DEGs) calculated using EdgeR GLM analysis. Columns: seq_id, Genbank_accession See the parameters section of this dataset for definitions of seq_id and Genbank_accession parameters used in this file. Blank values in Genbank_accession represent no corresponding value for seq_id |
Files
Filename: 914459_v1_relative_gene_expression.csv (13.06 MB)
Type: Comma Separated Values (.csv)
Description: Primary data file for dataset ID 914459, version 1 Relative gene expression given in log2(RPKM +1) for all transcripts based on RNA-Seq data mapped against a reference transcriptome.
Type: Comma Separated Values (.csv)
Description: Primary data file for dataset ID 914459, version 1 Relative gene expression given in log2(RPKM +1) for all transcripts based on RNA-Seq data mapped against a reference transcriptome.
Supplemental Files
Filename: supplemental_files/unpivoted_relative_gene_expression.csv (230.86 MB)
Type: Comma Separated Values (.csv)
Description: See the supplemental file "Metadata table parameter definitions", metadata_table_parameter_definitions.csv, for definitions of parameters included in this file that are not listed as parameters on this dataset page. Columns: seq_id, Genbank_Accession, Organism_Name, Station, Latitude, Longitude, Collection_date, Year, Month, Day, Depth_range, Replicate, relative_expression, week_after_molting_to_CV, feeding_protocol
Type: Comma Separated Values (.csv)
Description: See the supplemental file "Metadata table parameter definitions", metadata_table_parameter_definitions.csv, for definitions of parameters included in this file that are not listed as parameters on this dataset page. Columns: seq_id, Genbank_Accession, Organism_Name, Station, Latitude, Longitude, Collection_date, Year, Month, Day, Depth_range, Replicate, relative_expression, week_after_molting_to_CV, feeding_protocol
Filename: supplemental_files/metadata_table_with_ncbi_accessions.csv (10.55 KB)
Type: Comma Separated Values (.csv)
Description: See the supplemental file "Metadata table parameter definitions", metadata_table_parameter_definitions.csv, for definitions of parameters included in this metadata table. Columns: Replicate, Organism_Name, Station, Latitude, Longitude, Collection_date, Year, Month, Day, Depth_range, week_after_molting_to_CV, feeding_protocol, BioProject, Study_Accession, Study_Title, Experiment_Accession, Experiment_Title, BioSample, Sample_Accession
Type: Comma Separated Values (.csv)
Description: See the supplemental file "Metadata table parameter definitions", metadata_table_parameter_definitions.csv, for definitions of parameters included in this metadata table. Columns: Replicate, Organism_Name, Station, Latitude, Longitude, Collection_date, Year, Month, Day, Depth_range, week_after_molting_to_CV, feeding_protocol, BioProject, Study_Accession, Study_Title, Experiment_Accession, Experiment_Title, BioSample, Sample_Accession
Filename: species_list.csv (211.00 B)
Type: Comma Separated Values (.csv)
Description: Species WoRMS taxonomy table with columns: ScientificName, AphiaID, LSID, Authority, Class, Order, Family, Genus, Species
Type: Comma Separated Values (.csv)
Description: Species WoRMS taxonomy table with columns: ScientificName, AphiaID, LSID, Authority, Class, Order, Family, Genus, Species
Filename: seq_id_genbank_accession_cross_reference.csv (1.96 MB)
Type: Comma Separated Values (.csv)
Description: Cross-reference between Trinity IDs and Genbank accession numbers Columns: seq_id, Genbank_accession See the parameters section of this dataset for definitions of seq_id and Genbank_accession parameters used in this file.
Type: Comma Separated Values (.csv)
Description: Cross-reference between Trinity IDs and Genbank accession numbers Columns: seq_id, Genbank_accession See the parameters section of this dataset for definitions of seq_id and Genbank_accession parameters used in this file.
Filename: metadata_table_parameter_definitions.csv (1.54 KB)
Type: Comma Separated Values (.csv)
Description: This file contains parameter definitions for the supplemental file "Metadata table including NCBI accessions", metadata_table_with_ncbi_accessions.csv Columns: suppliedName, description, suppliedUnits, no_data_value, bcodmo_standard_parameter_name, Datatype, Format suppliedName = Supplied Name description = parameter description suppliedUnits = parameter units no_data_value = fill value for no data bcodmo_standard_parameter_name = BCO-DMO standard parameter name DataType = parameter data type Format = date format if the parameter data type is date
Type: Comma Separated Values (.csv)
Description: This file contains parameter definitions for the supplemental file "Metadata table including NCBI accessions", metadata_table_with_ncbi_accessions.csv Columns: suppliedName, description, suppliedUnits, no_data_value, bcodmo_standard_parameter_name, Datatype, Format suppliedName = Supplied Name description = parameter description suppliedUnits = parameter units no_data_value = fill value for no data bcodmo_standard_parameter_name = BCO-DMO standard parameter name DataType = parameter data type Format = date format if the parameter data type is date
Filename: differentially_expressed_genes.csv (477.77 KB)
Type: Comma Separated Values (.csv)
Description: List of differentially expressed genes (DEGs) calculated using EdgeR GLM analysis. Columns: seq_id, Genbank_accession See the parameters section of this dataset for definitions of seq_id and Genbank_accession parameters used in this file. Blank values in Genbank_accession represent no corresponding value for seq_id
Type: Comma Separated Values (.csv)
Description: List of differentially expressed genes (DEGs) calculated using EdgeR GLM analysis. Columns: seq_id, Genbank_accession See the parameters section of this dataset for definitions of seq_id and Genbank_accession parameters used in this file. Blank values in Genbank_accession represent no corresponding value for seq_id