Dataset: Photochemical yield and color score data from short-term heat stress assays performed with with corals collected from sites around Heron Island, southern Great Barrier Reef in Sept and Oct of 2022

Name: Photochemical yield and color score data from short-term heat stress assays performed with with corals collected from sites around Heron Island, southern Great Barrier Reef in Sept and Oct of 2022
Published: 2024-05-07
Keywords: thermal tolerance, environmental variability, climate change, coral reefs, priming, oceans

Final no updates expectedDOI: 10.26008/1912/bco-dmo.926887.1Version 1 (2024-05-07)Dataset Type:experimental

Co-Principal Investigator, Contact: Katie Barott (University of Pennsylvania)

Co-Principal Investigator: Kristen Brown (University of Pennsylvania)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress (Coral Resilience)

Abstract

Variable temperature regimes that expose corals to sub-lethal heat stress have been recognized as a mechanism to increase coral thermal tolerance and lessen coral bleaching. However, there is a need to better understand which thermal regimes maximize coral stress hardening. Here, standardized thermal stress assays were used to determine the relative thermal tolerance of three divergent genera of corals (Acropora, Pocillopora, Porites) originating from six reef sites representing an increasing gr...

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Centroid: latitude: -23.27, longitude: 151.55
Temporal Extent: 2022-09-15 - 2022-10-30

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File(s)	Type	Description	Action
926887_v1_heron-island-heatstress-physiological.csv (215.61 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 926887, version 1	Download What is ERDDAP? SUBSET DATA VIEW TABLE CSV TSV GeoJSON MATLAB netCDF

Supplemental File(s)	Type	Description	Action
Local-habitat-heterogeneity-rivals-regional-differences-in-coral-thermal-tolerance-main.zip (195.68 KB)	ZIP Archive (ZIP)	Code related to this and other datasets supporting results publication Brown et al. (2024, doi:10.1007/s00338-024-02484-x). It also contains an alternate format of the same dataset which was used in conjunction with the code. This zip package contains the code version (commit) 9a4b1e0 of github repository https://github.com/imkristenbrown/Local-habitat-heterogeneity-rivals-regional-differences-in-coral-thermal-tolerance. Author: Kristen Brown (2024).	Download
Heron_STHS_photos.zip (2.86 GB)	ZIP Archive (ZIP)	Images used for analysis of coral color, a proxy for bleaching severity. Images are within folders by date and site name: 2022-09-28_Shallow Lagoon 2022-09-30_Deep Lagoon 2022-10-02_Reef Flat 2022-10-03_Reef Crest 2022-10-06_Fourth Point 2022-10-08_Harry's Bommie	Download
ed50.csv (2.13 KB)	Comma Separated Values (.csv)	Effective dose 50 (ED50, thermal tolerance). Photochemical yield and color score data were used to determine effective dose 50 (ED50, thermal tolerance) in this ED50 table. Column information: Genus, Coral genus, untiless Site_Code, Two letter code for site, untiless Site_Name, Site Name ( 'Deep Lagoon'; 'Fourth Point'; 'Harry\'s Bommie'; 'Reef Crest'; 'Reef Flat' ; 'Shallow Lagoon' ), Lat, Site latitude, decimal degrees Lon, Site longitude, decimal degrees ed50, photochemical yield effective dose 50 [ed50] , prop_dark, color score at the midpoint of the experimental heat assay , Estimate, predicted photochemical yield at ed50, unitless SE, standard error , Lower, 95% lower confidence interval , Upper, 95% upper confidence interval , Mean, mean seawater temperature, degree C Maximum, maximum seawater temperature, degree C Amplitude, mean diel seawater temperature amplitude, degree C day-1 Minimum, minimum seawater temperature, degree C DHW2020, degree heating weeks in 2020, degree C wk-1 DHW2016, degree heating weeks in 2016, degree C wk-1 Amp_max, maximum diel seawater temperature amplitude, degree C day-1	Download

Files

Filename: 926887_v1_heron-island-heatstress-physiological.csv (215.61 KB)
Type: Comma Separated Values (.csv)
Description: Primary data file for dataset ID 926887, version 1

Download

Supplemental Files

Filename: Local-habitat-heterogeneity-rivals-regional-differences-in-coral-thermal-tolerance-main.zip (195.68 KB)
Type: ZIP Archive (ZIP)
Description: Code related to this and other datasets supporting results publication Brown et al. (2024, doi:10.1007/s00338-024-02484-x). It also contains an alternate format of the same dataset which was used in conjunction with the code. This zip package contains the code version (commit) 9a4b1e0 of github repository https://github.com/imkristenbrown/Local-habitat-heterogeneity-rivals-regional-differences-in-coral-thermal-tolerance. Author: Kristen Brown (2024).

Download

Filename: Heron_STHS_photos.zip (2.86 GB)
Type: ZIP Archive (ZIP)
Description: Images used for analysis of coral color, a proxy for bleaching severity. Images are within folders by date and site name: 2022-09-28_Shallow Lagoon 2022-09-30_Deep Lagoon 2022-10-02_Reef Flat 2022-10-03_Reef Crest 2022-10-06_Fourth Point 2022-10-08_Harry's Bommie

Download

Filename: ed50.csv (2.13 KB)
Type: Comma Separated Values (.csv)
Description: Effective dose 50 (ED50, thermal tolerance). Photochemical yield and color score data were used to determine effective dose 50 (ED50, thermal tolerance) in this ED50 table. Column information: Genus, Coral genus, untiless Site_Code, Two letter code for site, untiless Site_Name, Site Name ( 'Deep Lagoon'; 'Fourth Point'; 'Harry\'s Bommie'; 'Reef Crest'; 'Reef Flat' ; 'Shallow Lagoon' ), Lat, Site latitude, decimal degrees Lon, Site longitude, decimal degrees ed50, photochemical yield effective dose 50 [ed50] , prop_dark, color score at the midpoint of the experimental heat assay , Estimate, predicted photochemical yield at ed50, unitless SE, standard error , Lower, 95% lower confidence interval , Upper, 95% upper confidence interval , Mean, mean seawater temperature, degree C Maximum, maximum seawater temperature, degree C Amplitude, mean diel seawater temperature amplitude, degree C day-1 Minimum, minimum seawater temperature, degree C DHW2020, degree heating weeks in 2020, degree C wk-1 DHW2016, degree heating weeks in 2016, degree C wk-1 Amp_max, maximum diel seawater temperature amplitude, degree C day-1

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See the "Related Datasets" section for other closely related data that was also part of the study published in Brown et al., 2024.

Related Datasets

IsRelatedTo

Dataset: Short-term heat stress assay Heron Island - experimental temperature data
Relationship Description: This dataset was part of the same heat-assay experiment.

Barott, K., Brown, K. (2024) Temperature data from short-term heat stress assays performed with with corals collected from sites around Heron Island, southern Great Barrier Reef in Sept and Oct of 2022. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-05-07 doi:10.26008/1912/bco-dmo.926905.1

IsRelatedTo

Dataset: Short-term heat stress assay Heron Island - thermal tolerance comparison between studies
Relationship Description: These datasets were part of the same study published in Brown et al., 2024.

Barott, K., Brown, K. (2024) Thermal tolerance (ED50) data used to compare previously published regional (Florida Reef Tract, Coral Sea, Red Sea) coral thermal tolerance with Heron Island, Great Barrier Reef values measured in 2022. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-05-07 doi:10.26008/1912/bco-dmo.926911.1

Related Publications

Results

Brown, K. T., Martynek, M. P., & Barott, K. L. (2024). Local habitat heterogeneity rivals regional differences in coral thermal tolerance. Coral Reefs. https://doi.org/10.1007/s00338-024-02484-x

Methods

Cunning, R., Parker, K. E., Johnson-Sapp, K., Karp, R. F., Wen, A. D., Williamson, O. M., Bartels, E., D’Alessandro, M., Gilliam, D. S., Hanson, G., Levy, J., Lirman, D., Maxwell, K., Million, W. C., Moulding, A. L., Moura, A., Muller, E. M., Nedimyer, K., Reckenbeil, B., … Baker, A. C. (2021). Census of heat tolerance among Florida’s threatened staghorn corals finds resilient individuals throughout existing nursery populations. Proceedings of the Royal Society B: Biological Sciences, 288(1961). https://doi.org/10.1098/rspb.2021.1613

Methods

Evensen, N. R., Parker, K. E., Oliver, T. A., Palumbi, S. R., Logan, C. A., Ryan, J. S., Klepac, C. N., Perna, G., Warner, M. E., Voolstra, C. R., & Barshis, D. J. (2023). The Coral Bleaching Automated Stress System (CBASS): A low‐cost, portable system for standardized empirical assessments of coral thermal limits. Limnology and Oceanography: Methods, 21(7), 421–434. Portico. https://doi.org/10.1002/lom3.10555

Methods

Marzonie, M. R., Bay, L. K., Bourne, D. G., Hoey, A. S., Matthews, S., Nielsen, J. J. V., & Harrison, H. B. (2022). The effects of marine heatwaves on acute heat tolerance in corals. Global Change Biology, 29(2), 404–416. Portico. https://doi.org/10.1111/gcb.16473

Methods

Strock, C. (2021). Protocol for extracting basic color metrics from Images in ImageJ/Fiji. Zenodo. https://doi.org/10.5281/ZENODO.5595203

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Dataset: Photochemical yield and color score data from short-term heat stress assays performed with with corals collected from sites around Heron Island, southern Great Barrier Reef in Sept and Oct of 2022

Final no updates expectedDOI: 10.26008/1912/bco-dmo.926887.1Version 1 (2024-05-07)Dataset Type:experimental

Co-Principal Investigator, Contact: Katie Barott (University of Pennsylvania)

Co-Principal Investigator: Kristen Brown (University of Pennsylvania)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress (Coral Resilience)

Abstract

Cite Dataset

Centroid: latitude: -23.27, longitude: 151.55
Temporal Extent: 2022-09-15 - 2022-10-30

XXX

Views

XX

Downloads

X

Citations

Download All Add to Cart

File(s)	Type	Description	Action
926887_v1_heron-island-heatstress-physiological.csv (215.61 KB)	Comma Separated Values (.csv)	Primary data file for dataset ID 926887, version 1	Download What is ERDDAP? SUBSET DATA VIEW TABLE CSV TSV GeoJSON MATLAB netCDF

Supplemental File(s)	Type	Description	Action
Local-habitat-heterogeneity-rivals-regional-differences-in-coral-thermal-tolerance-main.zip (195.68 KB)	ZIP Archive (ZIP)	Code related to this and other datasets supporting results publication Brown et al. (2024, doi:10.1007/s00338-024-02484-x). It also contains an alternate format of the same dataset which was used in conjunction with the code. This zip package contains the code version (commit) 9a4b1e0 of github repository https://github.com/imkristenbrown/Local-habitat-heterogeneity-rivals-regional-differences-in-coral-thermal-tolerance. Author: Kristen Brown (2024).	Download
Heron_STHS_photos.zip (2.86 GB)	ZIP Archive (ZIP)	Images used for analysis of coral color, a proxy for bleaching severity. Images are within folders by date and site name: 2022-09-28_Shallow Lagoon 2022-09-30_Deep Lagoon 2022-10-02_Reef Flat 2022-10-03_Reef Crest 2022-10-06_Fourth Point 2022-10-08_Harry's Bommie	Download
ed50.csv (2.13 KB)	Comma Separated Values (.csv)	Effective dose 50 (ED50, thermal tolerance). Photochemical yield and color score data were used to determine effective dose 50 (ED50, thermal tolerance) in this ED50 table. Column information: Genus, Coral genus, untiless Site_Code, Two letter code for site, untiless Site_Name, Site Name ( 'Deep Lagoon'; 'Fourth Point'; 'Harry\'s Bommie'; 'Reef Crest'; 'Reef Flat' ; 'Shallow Lagoon' ), Lat, Site latitude, decimal degrees Lon, Site longitude, decimal degrees ed50, photochemical yield effective dose 50 [ed50] , prop_dark, color score at the midpoint of the experimental heat assay , Estimate, predicted photochemical yield at ed50, unitless SE, standard error , Lower, 95% lower confidence interval , Upper, 95% upper confidence interval , Mean, mean seawater temperature, degree C Maximum, maximum seawater temperature, degree C Amplitude, mean diel seawater temperature amplitude, degree C day-1 Minimum, minimum seawater temperature, degree C DHW2020, degree heating weeks in 2020, degree C wk-1 DHW2016, degree heating weeks in 2016, degree C wk-1 Amp_max, maximum diel seawater temperature amplitude, degree C day-1	Download

Files

Filename: 926887_v1_heron-island-heatstress-physiological.csv (215.61 KB)
Type: Comma Separated Values (.csv)
Description: Primary data file for dataset ID 926887, version 1

Download

Supplemental Files

Download

See the "Related Datasets" section for other closely related data that was also part of the study published in Brown et al., 2024.

Related Datasets

IsRelatedTo

Dataset: Short-term heat stress assay Heron Island - experimental temperature data
Relationship Description: This dataset was part of the same heat-assay experiment.

IsRelatedTo

Related Publications

Results

Brown, K. T., Martynek, M. P., & Barott, K. L. (2024). Local habitat heterogeneity rivals regional differences in coral thermal tolerance. Coral Reefs. https://doi.org/10.1007/s00338-024-02484-x

Methods

Strock, C. (2021). Protocol for extracting basic color metrics from Images in ImageJ/Fiji. Zenodo. https://doi.org/10.5281/ZENODO.5595203

Dataset: Photochemical yield and color score data from short-term heat stress assays performed with with corals collected from sites around Heron Island, southern Great Barrier Reef in Sept and Oct of 2022

Co-Principal Investigator, Contact: Katie Barott (University of Pennsylvania)

Co-Principal Investigator: Kristen Brown (University of Pennsylvania)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress (Coral Resilience)

Abstract

Metadata

XXX

XX

X

Files

Supplemental Files

Related Datasets

Related Publications

Dataset: Photochemical yield and color score data from short-term heat stress assays performed with with corals collected from sites around Heron Island, southern Great Barrier Reef in Sept and Oct of 2022

Co-Principal Investigator, Contact: Katie Barott (University of Pennsylvania)

Co-Principal Investigator: Kristen Brown (University of Pennsylvania)

BCO-DMO Data Manager: Amber D. York (Woods Hole Oceanographic Institution)

Project: Influence of environmental pH variability and thermal sensitivity on the resilience of reef-building corals to acidification stress (Coral Resilience)

Abstract

Metadata

XXX

XX

X

Files

Supplemental Files

Related Datasets

Related Publications