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Dataset: Results of light-limited growth experiments including the full range of volatile organic compounds (VOCs) produced by the diatom T. weissflogii and alga D. tertiolecta during laboratory experiments conduced in Sept of 2023

Data not availableVersion 1 (2024-05-21)Dataset Type:experimental

Kimberly Halsey (Principal Investigator)

Hawra Almubarak (Student)

Amber D. York (BCO-DMO Data Manager)


Project: Interactions between phytoplankton and bacterioplankton mediated by volatile organic compounds (Plankton Interactions and VOC)


Abstract

Photosynthetic metabolism changes depending on growth rate. We hypothesized that metabolic shifts associated with light-limited growth would be observed in the amounts and collections of volatile organic compounds (VOCs) produced in different algae. Two different algae, a diatom, Thalassiosira weissflogii and a green alga, Dunaliella tertiolecta, were grown using semicontinuous batch culturing under constant light conditions at 10 uE and 180 uE resulting in steady state growth rates that were 0....

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VOCs were collected from axenic.Dunaliella tertiolecta (urn:lsid:marinespecies.org:taxname:178590) and Thalassiosira weissflogii (urn:lsid:marinespecies.org:taxname:163513) using proton transfer reaction time-of-flight mass spectroscopy (PTR-TOF/MS; Ionicon, Austria) as previously described (Moore et al., 2020). Autoclaved f/2+Si media was measured alongside the samples as blank (background) controls. 100 ml culture, media, or HPLC water was transferred to a dynamic stripping chamber (Halsey et al., 2017)and bubbled with breathing-grade air passed first through a hydrocarbon trap and then through a glass frit in the bottom of the chamber at 50 ml min-1 for 5 min to strip VOCs from the sample. The stripped gasses were directed into the PTR-ToF/MS for measurement via soft ionization with H3O+. The mass spectrum (30-240 a.m.u.) was acquired at 5 s intervals.  PTR-TOF/MS data were analyzed using PTR viewer 3.4.3 (Ionicon Analytik). A three-point calibration was performed on each .h5 file using a search range of 0.2 m/z. Within the three-point calibration mode, each mass spectrum was calibrated against three internal standards known to be present within the spectrum, namely 29.998 (NO+), 203.943, and 330.848 (1,3-diiodobenzene).


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Methods

Halsey, K. H., Giovannoni, S. J., Graus, M., Zhao, Y., Landry, Z., Thrash, J. C., Vergin, K. L., & de Gouw, J. (2017). Biological cycling of volatile organic carbon by phytoplankton and bacterioplankton. Limnology and Oceanography, 62(6), 2650–2661. Portico. https://doi.org/10.1002/lno.10596
Software

Ionicon Analytik Ges.m.b.H. (2021) PTR-MS VIEWER 3.4.3 UPDATE. Available from https://www.ionicon.com/blog/2021/ptr-ms-viewer-343-update
Results

Moore, E. R., Davie‐Martin, C. L., Giovannoni, S. J., & Halsey, K. H. (2020). Pelagibacter metabolism of diatom‐derived volatile organic compounds imposes an energetic tax on photosynthetic carbon fixation. Environmental Microbiology, 22(5), 1720–1733. Portico. https://doi.org/10.1111/1462-2920.14861