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Dataset: Results of diel cycle experiments including the full range of volatile organic compounds (VOCs) produced by the diatom P. tricornutum during laboratory experiments conduced in October of 2023

Data not availableVersion 1 (2024-05-21)Dataset Type:experimental

Kimberly Halsey (Principal Investigator)

Hawra Almubarak (Student)

Amber D. York (BCO-DMO Data Manager)


Project: Interactions between phytoplankton and bacterioplankton mediated by volatile organic compounds (Plankton Interactions and VOC)


Abstract

Algal photosynthetic metabolism changes depending on light availability. These metabolic shifts alter how photosynthetic energy is allocated into different biosynthetic and catabolic pathways yielding different metabolic intermediates and end products. Our research focuses on the metabolic intermediates and end products that are volatile organic compounds (VOCs). This dataset gives the full range of VOCs produced by the diatom, Phaeodactylum tricornutum, and detected by proton transfer reaction ...

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Volatile organic compounds (VOCs) were collected from axenic Phaeodactylum tricornutum (urn:lsid:marinespecies.org:taxname:175584) every 2 hours across a diel cycle using proton transfer reaction time-of-flight mass spectroscopy (PTR-TOF/MS; Ionicon, Austria) as previously described (Moore et al., 2020). Autoclaved f/2+Si media and HPLC-grade water were measured alongside the samples as blank (background) controls. 100 ml culture, media, or HPLC water was transferred to a dynamic stripping chamber (Halsey et al., 2017)and bubbled with breathing-grade air passed first through a hydrocarbon trap and then through a glass frit in the bottom of the chamber at 50 ml min-1 for 5 min to strip VOCs from the sample. 

The stripped gasses were directed into the PTR-ToF/MS for measurement via soft ionization with H3O+. The mass spectrum (30-240 a.m.u.) was acquired at 5 s intervals. 

PTR-TOF/MS data were analyzed using PTR viewer 3.4.3 (Ionicon Analytik). 

Media recipe:
Artificial seawater + 882 μM NO3 + 36.2 μM PO4 + 106 μM Si + 1x f/2 Trace metal mix + 1 x f/2 Vitamin mix

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Methods

Halsey, K. H., Giovannoni, S. J., Graus, M., Zhao, Y., Landry, Z., Thrash, J. C., Vergin, K. L., & de Gouw, J. (2017). Biological cycling of volatile organic carbon by phytoplankton and bacterioplankton. Limnology and Oceanography, 62(6), 2650–2661. Portico. https://doi.org/10.1002/lno.10596
Software

Ionicon Analytik Ges.m.b.H. (2021) PTR-MS VIEWER 3.4.3 UPDATE. Available from https://www.ionicon.com/blog/2021/ptr-ms-viewer-343-update
Results

Moore, E. R., Davie‐Martin, C. L., Giovannoni, S. J., & Halsey, K. H. (2020). Pelagibacter metabolism of diatom‐derived volatile organic compounds imposes an energetic tax on photosynthetic carbon fixation. Environmental Microbiology, 22(5), 1720–1733. Portico. https://doi.org/10.1111/1462-2920.14861