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Dataset: In Situ Amphipod and Copepod Video Output Captured by the Hoodsport ORCA Profiling Mooring Mounted SPC-2 Zoocam in the Hood Canal, Puget Sound, Washington from August to September 2018 (Zooplankton Swimming project)
Final no updates expectedDOI: 10.26008/1912/bco-dmo.928222.1Version 1 (2024-05-21)Dataset Type:Other Field Results
This dataset consists of videos of zooplankton swimming taken by an in-situ camera system (the SPC UW ZooCam) that was deployed on the Hoodsport ORCA profiling mooring in Hood Canal (Puget Sound), WA in summer 2018. Understanding zooplankton population dynamics is challenging, largely because traditional methods for quantifying zooplankton distributions are costly, limited in scope, and require extended analysis by trained analysts. We developed a novel methodology that combined remotely deploye...
Text file containing a description of the content and naming structure within the fps_20.zip file. fps_20.zip contains the full frame images, ROI (regions of interest) images, and swimming trajectories used in this analysis.
Data file containing copepod swimming metrics, such as the average swimming speed of different behaviors ("drifting," "cruising," and "jumping") and the probability of transitioning between behaviors. Swimming behaviors were extracted from in situ videos recorded under a range of environmental conditions (e.g. hypoxic and normoxic).
Data file containing an overview of each in situ video included in this analysis, the environmental conditions the video was recorded under, and the number of copepod swimming trajectories in each video.
Data file containing an overview of each in situ video included in this analysis, the environmental conditions the video was recorded under, and the number of copepod swimming trajectories in each video.
Data file containing copepod densities for each copepod size bin (1-2mm, 2-3mm, 3-4mm, and > 4mm) from in situ videos recorded under a range of environmental conditions (e.g. hypoxic and normoxic). Copepod densities were determined by calculating the average number of copepod localization per frame.
Data file containing an overview of each in situ video included in this analysis, the environmental conditions the video was recorded under, and the number of copepod swimming trajectories in each video.
Data file containing outputs from Hidden Markov Models, which used copepod swimming trajectories to predict average swimming speeds and transition probabilities between swimming behaviors under different environmental conditions (hypoxic and normoxic) and copepod size bins (1-2mm, 2-3mm, 3-4mm, and >4mm).
Data file containing amphipod swimming metrics, such as the average swimming speed of different behaviors ("darting" and "hovering") and the probability of transitioning between behaviors. Swimming behaviors were extracted from in situ videos recorded under a range of environmental conditions (e.g. hypoxic and normoxic).
Data file containing an overview of each in situ video included in this analysis, the environmental conditions the video was recorded under, and the number of amphipod swimming trajectories in each video.
Data file containing outputs from Hidden Markov Models, which used amphipod swimming trajectories to predict average swimming speeds and transition probabilities between swimming behaviors under different environmental conditions (hypoxic and normoxic) and amphipod size bins (1-2mm, 2-3mm, 3-4mm, and >4mm).
Data file containing amphipod densities for each amphipod size bin (1-2mm, 2-3mm, 3-4mm, and > 4mm) from in situ videos recorded under a range of environmental conditions (e.g. hypoxic and normoxic). Amphipod densities were determined by calculating the average number of amphipod localization per frame.
This file contains the parameter descriptions and units for Supplemental Data Files: 928222_v1_copepod_metdata.csv, 928222_v1_amphipod_metadata.csv, 928222_v1_copepod_density.csv, 928222_v1_amphipod_density.csv, 928222_v1_copepod_speeds.csv, 928222_v1_amphipod_speeds.csv, 928222_v1_copepod_hhm.csv, and 928222_v1_amphipod_hmm.csv
The primary file of this dataset is a tabular file of data containing an overview of each in situ video included in this analysis, the nearest CTD cast to the recording location of that vide, and selected environemntal data from the nearest CTD cast.
Related Datasets
IsRelatedTo
Dataset: SPC-UW-ZooCam classified zooplankton images Relationship Description: The classification algorithm applied against the videos in the zip archive associated with this dataset was trained against the images in this related dataset.
Keister, J. E., Grunbaum, D. (2024) Classified Zooplankton ZooCam Images Captured by the Hoodsport ORCA Profiling Mooring Mounted SPC-2 Zoocam in the Hood Canal, Puget Sound, Washington from July to September 2018 (Zooplankton Swimming project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-05-14 http://lod.bco-dmo.org/id/dataset/927518
IsRelatedTo
Dataset: Zooplankton Acidification Lab Results Relationship Description: The laboratory experiments producing these related data were conducted ahead of field operations to provide behavioral context to in-situ zooplankton responses to environmental stressors.
Keister, J. E., Grunbaum, D. (2024) Results from Calanus pacificus Acidification Laboratory Experiments from 2019-2020 (Zooplankton Swimming project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-04-30 doi:10.26008/1912/bco-dmo.926368.1
IsRelatedTo
Dataset: Zooplankton Hypoxia Lab Results Relationship Description: The laboratory experiments producing these related data were conducted ahead of field operations to provide behavioral context to in-situ zooplankton responses to environmental stressors.
Keister, J. E., Grunbaum, D. (2024) Results from Calanus pacificus Hypoxia Laboratory Experiments from 2019-2020 (Zooplankton Swimming project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-04-30 doi:10.26008/1912/bco-dmo.926332.1
Related Publications
No Related Publications
Keister, J. E., Grunbaum, D., Roberts, P. (2024) In Situ Amphipod and Copepod Video Output Captured by the Hoodsport ORCA Profiling Mooring Mounted SPC-2 Zoocam in the Hood Canal, Puget Sound, Washington from August to September 2018 (Zooplankton Swimming project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2024-05-21 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.928222.1 [access date]
If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.