| 16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020 | Assay type
| Assay_Type |
| Marine bryozoan aggregation experiments in shallow seagrass habitats in St. Teresa, Florida, USA in May 2017 | 1 = settlement plates deployed for 3 days; 2 = settlement plates placed back into the water after 3 days and collected again after another 3 days (capturing larvae that settled between day 4 and 6)
| Deployment |
| Apparent Quantum Yields for the Photochemical Formation of Carbonyl Compounds in Seawater from the R/V Endeavor EN589 in the Northwest Atlantic Ocean from September to October 2016. | Wavelength or temperature dependent set-up
| AQY_SetUp |
| Metadata for cathodic poised potential experiments with subsurface crustal samples from CORK borehole observatories at North Pond on the Mid-Atlantic Ridge during R/V Atlantis cruise AT39-01 | Name of the FLOCS experiment
| FLOCSname |
| Metadata for cathodic poised potential experiments with subsurface crustal samples from CORK borehole observatories at North Pond on the Mid-Atlantic Ridge during R/V Atlantis cruise AT39-01 | Type of the FLOCS experiment; values of U1382A downhole (recovered from the shallow horizon of U1382A), U1382A wellhead (from the wellhead of IODP Hole U1382A), and U1383C wellhead bottom water (from IODP Hole U1383C wellhead)
| FLOCStype |
| Oxygen concentrations measured at increasing distances over coral-algal interactions at Moorea, French Polynesia (Vermetids_Corals project) | Light type (light or dark)
| light_dark |
| Links to a microarray and transcriptome for C. finmarchicus in the Gulf of Maine from 2008-2011 (CFINTRANSCRIPT project) | type of analysis
| description |
| Carbonate chemistry associated with copepod experiments with varying CO2 (OA-Copepod_PreyQual project) | copepod egg production experiment for the associated chemical sample
| experiment |
| Chemotaxis of Pseudoalteromonas haloplanktis towards exudates of phage-infected and control Synechoccocus (VIC project) | Experiment type: control vs artificial seawater (ASW) (CvsASW) or phage vs artificial seawater (PvsASW).
| Experiment_type |
| Passive particle runs, larval movement, sea surface temperature, and velocity videos from Gulf of Maine coastal models from May to September of 2014 | Description of video file (e.g. "SST with velocity overlay"). Type of data in video file (particle or SST&V).
| Description |
| Net calcification rates of coral and calcified algae in pCO2 flume experiments in Moorea, French Polynesia from August to October of 2014 (OA_Coral_adapt project, MCR_LTER project) | Time sampled (Day/Night)
| day_night |
| Net calcification rates of coral and calcified algae in pCO2 flume experiments in Moorea, French Polynesia from August to October of 2014 (OA_Coral_adapt project, MCR_LTER project) | Experiment identifier (community/pavement/flow); see acquisition description for details
| experiment_type |
| Net calcification rates of coral and calcified algae in pCO2 flume experiments in Moorea, French Polynesia from August to October of 2014 (OA_Coral_adapt project, MCR_LTER project) | Flow speed in the flume
| flow |
| Net calcification rates of coral and calcified algae in pCO2 flume experiments in Moorea, French Polynesia from August to October of 2014 (OA_Coral_adapt project, MCR_LTER project) | Flume number
| flume |
| Net calcification rates of coral and calcified algae in pCO2 flume experiments in Moorea, French Polynesia from August to October of 2014 (OA_Coral_adapt project, MCR_LTER project) | Light level
| light |
| Accession numbers for raw sequences associated with field collections & microcosms, 2015 and 2016 | type of study
| study |
| Deep convection simulation from the MITgcm (MIT General Circulation Model) (IVOMLS project) | Experiment type
| experiment_type |
| Archived Oyster Samples Collected from the Delaware Bay from 2018 to 2021 (SEGO project) | Specific experiment the sample was used for
| Experiment |
| Depth ranges of occurrence for major functional groups of invertebrates, fish, and algae on global shallow and mesophotic reefs, 1973–2017 | whether benthic or fish were examined in the citation
| Analysis |
| Use of a diatom inhibitor reveals contribution to seagrass ecosystem in experiments conducted using seagrass cores from 1m depth in Grand Bay in 2017. | the block the core was placed in
| Block_A_to_D |
| Use of a diatom inhibitor reveals contribution to seagrass ecosystem in experiments conducted using seagrass cores from 1m depth in Grand Bay in 2017. | number 1-8 for cores placed in A-D locations (or block) within the outside mesocosm
| Paired_core_number |
| Use of a diatom inhibitor reveals contribution to seagrass ecosystem in experiments conducted using seagrass cores from 1m depth in Grand Bay in 2017. | the number of repeated trials (1-3) that was done
| Trial_Number |
| Silica and nitrogen analyses from incubation experiments conducted using seagrass cores from 1m depth in Grand Bay in 2017. | indicates where the core was taken from
| Core_Taken_From |
| Silica and nitrogen analyses from incubation experiments conducted using seagrass cores from 1m depth in Grand Bay in 2017. | indicates whether it is trial 1, 2, or 3
| Trial |
| Time-series of nutrient measurements following addition of diatom derived POM to seawater samples collected at Station ALOHA on R/V Kilo Moana cruise KM1110 in the North Pacific Subtropical Gyre in 2011 | Experiment type/location. (lab = measured in the lab post-cruise; sea = measured at sea)
| exp_type |
| Dive log from coastal reefs of Ormoc Bay, Leyte, Philippines, 2012-2018 | dive type options:
A - anemone survey dive
B
C - clownfish collection dive
D - clownfish collection with transect (2012)
E - clownfish collection with transect and mapping fish survey (2012)
F - fish transect with quadrats for coral survey
G
H
I
J
K
L
M - mapping fish survey with transect (2012)
N
O
P
Q
R - recapture survey
S
T
U
V
W
X
Y
Z
0 - none of the above
| dive_type |
| Time-series pH data from methods development of Durafet pH sensors for use in laboratory experiments in 2016 and 2017 (pHVAR project) | Experiment type
| Experiment_Type |
| DYEatom Metatranscriptome metadata from RV/Point Sur cruise PS1312 in the Monterey Bay area, June-July 2013 | NCBI BioProject type
| BioProject_type |
| Sizes of organisms used to calculate growth and for community analysis from back reef community flume experiments conducted in Moorea, French Polynesia, from Nov 2015 to Nov 2016 | Analysis type. Actual = data as obtained with missing values. NMDS = data processed for NMDS analyses with missing values replaced as described in Edmunds et al. (2019).
| Analysis |
| Preferences of E. Lori settlers on sponge habitat in South Water Caye, Belize during 2011 and 2017. | Habitat preference experiment codes (SP= Sponge vs. PVC; YB = Yellow vs. Brown sponges; LS = Large vs. Small yellow sponges; MS = Multi vs. Single tube yellow sponges; and RNR = Resident occupied vs No-Resident yellow sponges).
| Exp |
| Growth metrics of Pocillopora verrucosa and Acropora hyacinthus corals under two pCO2 treatments at Moorea, French Polynesia from May to June of 2014 (OA coral adaptation project) | The arrangement surrounding the central P. verrucosa colonies. See acquisition description for details of arangement configurations
| arrangement |
| Growth metrics of Pocillopora verrucosa and Acropora hyacinthus corals under two pCO2 treatments at Moorea, French Polynesia from May to June of 2014 (OA coral adaptation project) | Flume number (2 & 4 = ambient pCO2 treatment; 1 & 3 = high pCO2 treatment)
| flume |
| Seawater chemistry during pCO2 flume experiments at Richard B Gump Research Station in Moorea, French Polynesia from May to June of 2014 | Flume number (2 & 4 = ambient pCO2 treatment; 1 & 3 = high pCO2 treatment)
| flume |
| Physiological metrics recorded at the end of experiments conducted to examine two coral species' responses to thermal stress | experiment: CBASS = Coral Bleaching Automated Stress System; Prolonged = two-week prolonged heating experiment at the King Abdullah University of Science and Technology (KAUST)
| Experiment |
| Maximum potential quantum efficiency of Photosystem II (Fv/Fm) for two coral species, Acropora hemprichii and Porites lobata, in response to thermal stress | experiment: CBASS = Coral Bleaching Automated Stress System; Prolonged = two-week prolonged heating experiment at the King Abdullah University of Science and Technology (KAUST)
| Experiment |
| Evolutionary and acclimatory shifts in gene expression of Eurytemora affinis copepods reared in saline and freshwater conditions during laboratory experiments from 2011-2014 | Experiment description
| Description |
| Growth rates NE Pacific and Atlantic diatom isolates under various Zn and Co additions in experiments with cultures collected from R/V Thomas G. Thompson cruise TN280, along Line P in the NE Pacific, in May of 2012. | Experiment Type. One (simple) or both (matrix) metals added.
| Experiment_Type |
| Growth rates of the polar diatom Chaetoceros RS19 under various +Zn and +Co conditions from September 2019 (MM Saito project) | One (simple) or both (double addition) metals added
| Experiment_Type |
| Annotated de novo transcriptomes generated from six co-occurring species of calanoid copepods from the R/V Tiglax TXF18, TXS19, TXF15, TXF17 in the Gulf of Alaska from 2015-2019 | Title of the the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) experiment metadata table (SRX)
| Experiment_Title |
| Annotated de novo transcriptomes generated from six co-occurring species of calanoid copepods from the R/V Tiglax TXF18, TXS19, TXF15, TXF17 in the Gulf of Alaska from 2015-2019 | Title of NCBI SRA study
| Study_Title |
| Matrix of taxon by sample for hard substrates collected by HOV Alvin during R/V Atlantis cruise AT37-13 and AT42-03 in the Pacific margin of Costa Rica in 2017 and 2018. | Experiment type
| Experiment |
| Averages and standard deviation across species for all macrofauna found on each carbonate rock collected during R/V Atlantis cruise AT37-13 in the Pacific margin of Costa Rica from May to June 2017 | description
| Experiment |
| Physiology color score extracted from pictures taken during a heatwave experiment done September to November 2018 using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i. | Physiology for all entries indicating that fragment was sampled for physiology
| ANALYSIS |
| Vascular plant and microbial biomarkers of dissolved organic matter data from incubation experiments | Incubations conducted in the dark alone are classified as "microbial, and incubations using a dark/light cycle are classified as "coupled".
| incubation_type |
| Initial prey abundances for copepod grazing experiments in the Kaneohe Bay, HI, March-April 2015 (JEMBE 2017) (EAGER: Copepod nauplii project) | whether control or treatment
| expt_type |
| Killed controls run during remineralization experiments from R/V Kilo Moana cruise KM1110 in the North Pacific Subtropical Gyre in 2011 | Experiment type/location. (lab = measured in the lab post-cruise; sea = measured at sea)
| exp_type |
| Lemon shark acceleration and oxygen consumption (Shark Metabolic Rate project) | whether trial was in flume or static water
| flume_static |
| Predation of two snail species (Cerithideopis californica and Cerithideopsis montagnei) by a the whelk (Thais kiosquiformis) in Panamanian mangroves in 2014 (Estuarine Parasites project) | a unique identifier for each cage; a combination of a letter ("A" "B" or "C" depending on the treatment assigned to each cage) and a number (we had 12 replicates of each treatment so a number between 1 and 12)
| cage_code |
| Predation of two snail species (Cerithideopis californica and Cerithideopsis montagnei) by a the whelk (Thais kiosquiformis) in Panamanian mangroves in 2014 (Estuarine Parasites project) | structure content of cage; 1) "Trunk" cages contained a mangrove trunk that prey snails could potentially climb to escape Thais kiosquiformis predators. 2) "Trunk_Pneum" cages contained both a mangrove trunk and pneumatophore roots that prey snails could potentially climb. 3) "Unstructured" cages contained no structure that prey snails could potentially climb
| treatment_type |
| List of marine algal steroids used in zooplankton metabolic, growth and reproduction experiments | type of experiment using marine algal sterols
| expt_type |
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