16S V4 rRNA gene tag sequences from reef seawater | 16S V4 rRNA gene tag sequences from reef seawater | Assay type
| Assay_Type |
Aggregation in the field | | 1 = settlement plates deployed for 3 days; 2 = settlement plates placed back into the water after 3 days and collected again after another 3 days (capturing larvae that settled between day 4 and 6)
| Deployment |
Apparent Quantum Yields | | Wavelength or temperature dependent set-up
| AQY_SetUp |
AT39-01 CathodicEET Experiment Metadata | | Name of the FLOCS experiment
| FLOCSname |
AT39-01 CathodicEET Experiment Metadata | | Type of the FLOCS experiment; values of U1382A downhole (recovered from the shallow horizon of U1382A), U1382A wellhead (from the wellhead of IODP Hole U1382A), and U1383C wellhead bottom water (from IODP Hole U1383C wellhead)
| FLOCStype |
BrownOsenberg_2018- InitO2_DBLthick | Datasets that evaluate how vermetid (Ceraesignum maximum) modify physical and chemical conditions above coral-algal interactions (i.e., light, flow and oxygen). | Light type (light or dark)
| light_dark |
Calanus finmarchicus transcriptomics | Links to a microarray and transcriptome for C. finmarchicus | type of analysis
| description |
Carbonate chemistry | Carbonate chemistry for copepod experiments | copepod egg production experiment for the associated chemical sample
| experiment |
Chemotaxis of P. haloplanktis towards exudates of Synechoccocus | | Experiment type: control vs artificial seawater (ASW) (CvsASW) or phage vs artificial seawater (PvsASW).
| Experiment_type |
Coastal Gulf of Maine model output | | Description of video file (e.g. "SST with velocity overlay"). Type of data in video file (particle or SST&V).
| Description |
Comeau 2016: calcification rates | Net calcification rates of coral and calcified algae under pCO2 flume experiments | Time sampled (Day/Night)
| day_night |
Comeau 2016: calcification rates | Net calcification rates of coral and calcified algae under pCO2 flume experiments | Experiment identifier (community/pavement/flow); see acquisition description for details
| experiment_type |
Comeau 2016: calcification rates | Net calcification rates of coral and calcified algae under pCO2 flume experiments | Flow speed in the flume
| flow |
Comeau 2016: calcification rates | Net calcification rates of coral and calcified algae under pCO2 flume experiments | Flume number
| flume |
Comeau 2016: calcification rates | Net calcification rates of coral and calcified algae under pCO2 flume experiments | Light level
| light |
Community 16S rRNA gene sequences | 16S rRNA accessions | type of study
| study |
Deep convection simulation using MITgcm | MITgcm model deep convection simulation output | Experiment type
| experiment_type |
Delaware Bay Oyster Samples | Delaware Bay oyster archived tissues | Specific experiment the sample was used for
| Experiment |
Depth ranges for global mesophotic reefs | Depth ranges of occurrence on reefs | whether benthic or fish were examined in the citation
| Analysis |
Diatom contribution to benthic GPP | | the block the core was placed in
| Block_A_to_D |
Diatom contribution to benthic GPP | | number 1-8 for cores placed in A-D locations (or block) within the outside mesocosm
| Paired_core_number |
Diatom contribution to benthic GPP | | the number of repeated trials (1-3) that was done
| Trial_Number |
Diatom contribution to benthic GPP - Silica and Nitrogen analyses | | indicates where the core was taken from
| Core_Taken_From |
Diatom contribution to benthic GPP - Silica and Nitrogen analyses | | indicates whether it is trial 1, 2, or 3
| Trial |
Diatom Remineralization Exp | Time-series of nutrient measurements following addition of diatom derived POM to seawater collected at Station ALOHA. | Experiment type/location. (lab = measured in the lab post-cruise; sea = measured at sea)
| exp_type |
dive log | dive log | dive type options:
A - anemone survey dive
B
C - clownfish collection dive
D - clownfish collection with transect (2012)
E - clownfish collection with transect and mapping fish survey (2012)
F - fish transect with quadrats for coral survey
G
H
I
J
K
L
M - mapping fish survey with transect (2012)
N
O
P
Q
R - recapture survey
S
T
U
V
W
X
Y
Z
0 - none of the above
| dive_type |
Durafet methods development: pH time series | Time-series pH data from methods development of Durafet pH sensors for use in laboratory experiments | Experiment type
| Experiment_Type |
DYEatom: Metatranscriptome accessions and assembled contigs | | NCBI BioProject type
| BioProject_type |
Edmunds et al. 2019b: Sizes of organisms used to calculate growth and for community analysis | | Analysis type. Actual = data as obtained with missing values. NMDS = data processed for NMDS analyses with missing values replaced as described in Edmunds et al. (2019).
| Analysis |
Elacatinus lori habitat preferences | Preferences of Elacatinus lori settlers for sponge habitats. | Habitat preference experiment codes (SP= Sponge vs. PVC; YB = Yellow vs. Brown sponges; LS = Large vs. Small yellow sponges; MS = Multi vs. Single tube yellow sponges; and RNR = Resident occupied vs No-Resident yellow sponges).
| Exp |
Evensen and Edmunds 2016: coral growth | Growth metrics of Pocillopora verrucosa and Acropora hyacinthus corals under two pCO2 treatments | The arrangement surrounding the central P. verrucosa colonies. See acquisition description for details of arangement configurations
| arrangement |
Evensen and Edmunds 2016: coral growth | Growth metrics of Pocillopora verrucosa and Acropora hyacinthus corals under two pCO2 treatments | Flume number (2 & 4 = ambient pCO2 treatment; 1 & 3 = high pCO2 treatment)
| flume |
Evensen and Edmunds 2016: seawater chemistry | Seawater chemistry during pCO2 flume experiments | Flume number (2 & 4 = ambient pCO2 treatment; 1 & 3 = high pCO2 treatment)
| flume |
Final Physiology | Final Physiology | experiment: CBASS = Coral Bleaching Automated Stress System; Prolonged = two-week prolonged heating experiment at the King Abdullah University of Science and Technology (KAUST)
| Experiment |
Fv/Fm | Fv/Fm | experiment: CBASS = Coral Bleaching Automated Stress System; Prolonged = two-week prolonged heating experiment at the King Abdullah University of Science and Technology (KAUST)
| Experiment |
Gene expression of Eurytemora affinis (saline and freshwater) | | Experiment description
| Description |
Growth rates of Line P diatoms in added Zn and Co incubation studies | | Experiment Type. One (simple) or both (matrix) metals added.
| Experiment_Type |
Growth rates of the polar diatom Chaetoceros RS19 in +Zn and +Co incubation studies | Growth rates of the Ross Sea diatom isolate Chaetoceros sp. RS19 under various Zinc and Cobalt additions. | One (simple) or both (double addition) metals added
| Experiment_Type |
Hard Substrates Community Matrix, AT37-13 & AT42-03 | Hard substrates matrix | Experiment type
| Experiment |
Hard Substrates Isotopes, AT37-13 & AT42-03 | | description
| Experiment |
Heatwave Experiment: Color Score Physiology | Heatwave Experiment: Color Score Physiology | Physiology for all entries indicating that fragment was sampled for physiology
| ANALYSIS |
Incubation Data | Results of incubation experiments | Incubations conducted in the dark alone are classified as "microbial, and incubations using a dark/light cycle are classified as "coupled".
| incubation_type |
Initial prey abundance and biomass: JEMBE 2017 | Initial prey abundance and biomass: JEMBE 2017 | whether control or treatment
| expt_type |
Killed Controls | Killed controls run during remineralization experiments. | Experiment type/location. (lab = measured in the lab post-cruise; sea = measured at sea)
| exp_type |
Lemon shark respirometry | Lemon shark acceleration and oxygen consumption | whether trial was in flume or static water
| flume_static |
Mangrove snail predation | Thais kiosquiformis snail predation in Panamanian mangroves | a unique identifier for each cage; a combination of a letter ("A" "B" or "C" depending on the treatment assigned to each cage) and a number (we had 12 replicates of each treatment so a number between 1 and 12)
| cage_code |
Mangrove snail predation | Thais kiosquiformis snail predation in Panamanian mangroves | structure content of cage; 1) "Trunk" cages contained a mangrove trunk that prey snails could potentially climb to escape Thais kiosquiformis predators. 2) "Trunk_Pneum" cages contained both a mangrove trunk and pneumatophore roots that prey snails could potentially climb. 3) "Unstructured" cages contained no structure that prey snails could potentially climb
| treatment_type |
Marine algal sterols | list of marine algal steroids used in zooplankton metabolic, growth and reproduction experiments | type of experiment using marine algal sterols
| expt_type |
Metadata from meta-analysis on CovGE in phenotypic results | Metadata from Meta-Analysis on CovGE in phenotypic results | whether experimental treatments were categorical or continuous
| exp_env_type |
Minutocellus polymorphus TEP and Microaggregate Formation: Cell Abundance | | Experimental culture, listing the organisms grown
| Culture |