Concentration or count of genetic material.
Dataset Name | Dataset Brief Description | PI-Supplied Parameter Description | PI-Supplied Parameter Name |
---|---|---|---|
Bugula neritina mesocosm symbiont titers | Symbiont titers in B. neritina colonies grown under different conditions | Ratio symb/host gene copy number colonies grown at 16°C, no predators, after 18 weeks | Cont_18w_16 |
Bugula neritina mesocosm symbiont titers | Symbiont titers in B. neritina colonies grown under different conditions | Ratio symb/host gene copy number colonies grown at 22°C, no predators, after 18 weeks | Cont_18w_22 |
Bugula neritina mesocosm symbiont titers | Symbiont titers in B. neritina colonies grown under different conditions | Ratio symb/host gene copy number colonies grown at 16°C, no predators, after 23 weeks | Cont_23w_16 |
Bugula neritina mesocosm symbiont titers | Symbiont titers in B. neritina colonies grown under different conditions | Ratio symb/host gene copy number colonies grown at 22°C, no predators, after 23 weeks | Cont_23w_22 |
Bugula neritina mesocosm symbiont titers | Symbiont titers in B. neritina colonies grown under different conditions | Ratio of symbiont gene copy number to host gene copy number of parent | Parent |
Bugula neritina mesocosm symbiont titers | Symbiont titers in B. neritina colonies grown under different conditions | Ratio symb/host gene copy number colonies grown at 16°C, with predators, after 18 weeks | Pred_18w_16 |
Bugula neritina mesocosm symbiont titers | Symbiont titers in B. neritina colonies grown under different conditions | Ratio symb/host gene copy number colonies grown at 22°C, with predators, after 18 weeks | Pred_18w_22 |
Bugula neritina mesocosm symbiont titers | Symbiont titers in B. neritina colonies grown under different conditions | Ratio symb/host gene copy number colonies grown at 16°C, with predators, after 23 weeks | Pred_23w_16 |
Bugula neritina mesocosm symbiont titers | Symbiont titers in B. neritina colonies grown under different conditions | Ratio symb/host gene copy number colonies grown at 22°C, with predators, after 23 weeks | Pred_23w_22 |
Gene Abundance | Abundance of Arch gene within a given subsample of soil | Archaea | |
Gene Abundance | Abundance of 16S gene within a given subsample of soil | Bacteria | |
Gene Abundance | Abundance of dsrA gene within a given subsample of soil | dsrA | |
Gene copies | Number of gene markers identified in sediment. | Number of gene markers identified in sediment at the site East; location of site is 30.253347, -87.724729 | East |
Gene copies | Number of gene markers identified in sediment. | Standard error for gene markers identified in sediment | East_SE |
Gene copies | Number of gene markers identified in sediment. | Number of gene markers identified in sediment at the site Mouth; location of site is 30.243683, -87.738407 | Mouth |
Gene copies | Number of gene markers identified in sediment. | Standard error for gene markers identified in sediment | Mouth_SE |
Gene copies | Number of gene markers identified in sediment. | Number of gene markers identified in sediment at the site West; location of site is 30.247181, -87.767856 | West |
Gene copies | Number of gene markers identified in sediment. | Standard error for gene markers identified in sediment | West_SE |
Pooled sequencing data from field-collected Eurytemora affinis | Total sequenced DNA bases | Bases | |
qPCR | LMG1801 qPCR | Concentration of ammonia monooxygenase subunit A genes from Beta-proteobacteria determined by qPCR in units of 103 copies L-1. "nd" = no data. Limit of detection estimated from volume filtered, DNA extract volume, template volume used per reaction and standard curves is 8 * 103 copies L-1, values | AOB_amoA |
qPCR | LMG1801 qPCR | Concentration of Bacteria 16S rRNA genes determined by qPCR in units of 106 copies L-1. "nd" = no data. Limit of detection estimated from volume filtered, DNA extract volume, template volume used per reaction and standard curves is 5 * 106 copies L-1, values | bact16S |
qPCR | LMG1801 qPCR | Concentration of Nitrospina 16S rRNA genes determined by qPCR in units of 103 copies L-1. "nd" = no data. Limit of detection estimated from volume filtered, DNA extract volume, template volume used per reaction and standard curves is 2 * 103 copies L-1, values | NOB_16S_rRNA |
qPCR | LMG1801 qPCR | Concentration of Thaumarchaeota urease subunit C genes determined by qPCR in units of 103 copies L-1. "nd" = no data. Limit of detection estimated from volume filtered, DNA extract volume, template volume used per reaction and standard curves is 8 * 103 copies L-1, values | Thaumarchaeota_ureC |
qPCR | LMG1801 qPCR | Concentration of Marine Group 1 Archaea (Thaumarchaeota) 16S rRNA genes determined by qPCR in units of 103 copies L-1. "nd" = no data. Limit of detection estimated from volume filtered, DNA extract volume, template volume used per reaction and standard curves is 2 * 103 copies L-1, values | Thaum_16S |
qPCR | LMG1801 qPCR | Concentration of ammonia monooxygenase subunit A genes from the Water Column clade A Thaumarchaeota determined by qPCR in units of 103 copies L-1."nd" = no data. Limit of detection estimated from volume filtered, DNA extract volume, template volume used per reaction and standard curves is 1 * 103 copies L-1, values | WCA_amoA |
qPCR | LMG1801 qPCR | Concentration of ammonia monooxygenase subunit A genes from the Water Column clade B Thaumarchaeota determined by qPCR in units of 103 copies L-1. "nd" = no data. Limit of detection estimated from volume filtered, DNA extract volume, template volume used per reaction and standard curves is 1 * 103 copies L-1, values | WCB_amoA |
Quantitative PCR data | Quantitative PCR targeting Trichodesmium, UCYN-A, UCYN-B, gamma-24774A11, and Het1, based on the nifH gene. | Gamma 24774A11 gene copy concentration | Gamma_24774A11 |
Quantitative PCR data | Quantitative PCR targeting Trichodesmium, UCYN-A, UCYN-B, gamma-24774A11, and Het1, based on the nifH gene. | Group B gene copy concentration | group_B |
Quantitative PCR data | Quantitative PCR targeting Trichodesmium, UCYN-A, UCYN-B, gamma-24774A11, and Het1, based on the nifH gene. | Het1 gene copy concentration | Het1 |
Quantitative PCR data | Quantitative PCR targeting Trichodesmium, UCYN-A, UCYN-B, gamma-24774A11, and Het1, based on the nifH gene. | Tricho gene copy concentration | Tricho |
Quantitative PCR data | Quantitative PCR targeting Trichodesmium, UCYN-A, UCYN-B, gamma-24774A11, and Het1, based on the nifH gene. | UCYN-A gene copy concentration | UCYN_A |
SCCS Diazotroph Abundances | qPCR abundance data | Average of γ-24774A11 gene expression | g_24774A11_ave |
SCCS Diazotroph Abundances | qPCR abundance data | Standard deviation of γ-24774A11 gene expression | g_24774A11_stdev |
SCCS Diazotroph Abundances | qPCR abundance data | Average of UCYN-A1 gene expression | Het_2_ave |
SCCS Diazotroph Abundances | qPCR abundance data | Standard deviation of UCYN-A1 gene expression | Het_2_stdev |
SCCS Diazotroph Abundances | qPCR abundance data | Average of UCYN-A1 gene expression | Tricho_ave |
SCCS Diazotroph Abundances | qPCR abundance data | Standard deviation of UCYN-A1 gene expression | Tricho_stdev |
SCCS Diazotroph Abundances | qPCR abundance data | Average of UCYN-A1 gene expression | UCYN_A1_ave |
SCCS Diazotroph Abundances | qPCR abundance data | Standard deviation of UCYN-A1 gene expression | UCYN_A1_stdev |
SCCS Diazotroph Abundances | qPCR abundance data | Average of UCYN-A2 gene expression | UCYN_A2_ave |
SCCS Diazotroph Abundances | qPCR abundance data | Standard deviation of UCYN-A2 gene expression | UCYN_A2_stdev |
SCCS Diazotroph Abundances | qPCR abundance data | Average of UCYN-B gene expression | UCYN_B_ave |
SCCS Diazotroph Abundances | qPCR abundance data | Standard deviation of UCYN-B gene expression | UCYN_B_stdev |
SERC 2019 viral dilution incubations | Gene copy number counts and 16S analyses of July 2019 Rhode River surface water incubated with or without viral dilution | 16S qPCR Gene Copy Number Mean | Genes_16S |
SERC 2019 viral dilution incubations | Gene copy number counts and 16S analyses of July 2019 Rhode River surface water incubated with or without viral dilution | RNR qPCR Gene Copy Number Mean | RNR_Genes |
SERC time series | Water quality data, gene copy number counts, and 16S analyses from Rhode River samples collected at SERC | 16S qPCR Gene Copy Number Mean | Genes_16S_1 |
SERC time series | Water quality data, gene copy number counts, and 16S analyses from Rhode River samples collected at SERC | 16S qPCR Gene Copy Number Standard Error | Genes_16S_2 |
SERC time series | Water quality data, gene copy number counts, and 16S analyses from Rhode River samples collected at SERC | RNR qPCR Gene Copy Number Mean | RNR_Genes_1 |
SERC time series | Water quality data, gene copy number counts, and 16S analyses from Rhode River samples collected at SERC | RNR qPCR Gene Copy Number Standard Error | RNR_Genes_2 |
South Atlantic Bight nitro cruises 2014 | Environmental data, nitrifier abundance, ammonia oxidation rates from the South Atlantic Bight | Concentration of genes for Archaeal ammonia monooxygenase subunit A determined by qPCR | arch_amoA |