Parameter: SRA_run

Short Description: NCBI SRA run accession (SRR)
Short Name: SRA_run
Official Name: SRA_run

Description

The National Center for Biotechnology Information (NCBI) Run accession in the Sequence Read Archive (SRA).

Results are called runs in the SRA. Runs comprise the data gathered for a sample or sample bundle and refer to a defining experiment.

A Run is an object that contains actual sequencing data for a particular sequencing experiment. Experiments may contain many Runs depending on the number of sequencing instrument runs that were needed.

This identifier usually begins with SRR

DatasetPI-Supplied DescriptionPI-Supplied Name
16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020SRA run ID SRA_Run_ID
18s DNA sequence of potential prey of siphonophoresThe unique NCBI identifier for each sequencing run Run
Information about sequences of coral, Acropora cervicornis, collected from host colonies at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys in November and December 2019SRA run identifier SRA_Run
Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015SRA run identifier SRA_run_ID
Microbiome composition of coral species collected from reefs in Mo'orea, French Polynesia and exposed to various experimental treatments in August 2018NCBI Short Read Archive Accession reference SRA_accession
Annotated de novo transcriptomes generated from six co-occurring species of calanoid copepods from the R/V Tiglax TXF18, TXS19, TXF15, TXF17 in the Gulf of Alaska from 2015-2019Run accession in the Sequence Read Archive (SRA) at NCBI SRA_Accession
Flow cytometry, 16S rRNA gene amplicons, chlorophyll a, and surface seawater measurements taken between August 2017 to June 2019 Kāneʻohe Bay, Oʻahu, HawaiʻiNCBI SRA Accession for amplicon data. SRA_accession
Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, HawaiʻiNCBI SRA Accession for amplicon data. Amplicon_SRA_accession
Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, HawaiʻiNCBI SRA Accession for metagenomes. Metagenome_SRA_accession
Analysis protocols, sample information, code, and datasets associated with the manuscript Structure and long-term stability of the microbiome in diverse diatom cultures from samples collected in Guam, California, and Gulf of Mexico between 2008 and 2016NCBI Sequence Read Archive (SRA) Run identifier Run
Sequence read accession (SRA) numbers for bacterial and archaeal 16S rRNA gene amplicons from the DeepCCZ and Abyssline programsNCBI SRA run ID SRA_run_ID
High-throughput sequencing of the 16S rRNA gene, microscopy, and flow cytometry of pyrosome-associated microorganisms compared to seawater sampled during a Pyrosoma atlanticum bloom in the Northern California Current System in July 2018.NCBI SRA run accession ID sra_run_accession
Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female from the R/V Tiglax and R/V Sikuliaq in the Northern Gulf of Alaska from 2015-2022Run accession in the Sequence Read Archive (SRA) at NCBI SRA_Run_Accession
16S rRNA gene of microorganisms sampled along the Newport Hydrographic (NH) and Trinidad Head (TR) lines, in OR and CA in 2018 and 2019NCBI SRA run accession ID sra_run_accession
NCBI accession numbers describing 16S rRNA and 16S rRNA gene amplicon sequences from sediment samples collected offshore of San Francisco, Califronia, USA in March 2017 on R/V Oceanus cruise OC1703ANCBI SRA run accession SRA_run_ID
19 Metagenomes and 7 metatranscriptomes from sediment samples collected offshore of San Francisco, Califronia, USASRA run accession SRA_run_ID
19 Metagenomes and 7 metatranscriptomes from sediment samples collected offshore of San Francisco, Califronia, USAHyperlink to SRA run SRA_run_link
Genetic sequence accessions, collection information, and methodology for raw sequences from ezRAD libraries of Pocillopora spp. collected in Moorea, French Polynesia in 2019SRA Run ID Run
Pooled sequencing data of field-collected Eurytemora affinis copepods from nine locations in North America collected October 2012 to March 2014NCBI SRA run number Run
RADseq data from Atlantic silversides used for linkage and QTL mapping.NCBI SRA run accession number SRA_run_accession
NCBI SRA run accession ID sra_run_accession
NCBI Run Number. Run
Sample information for 16S and 18S V4 amplicon sequencing of microbial communities in sinking particles and water column samples collected during R/V Atlantic Explorer cruises AE1718 and AE1809 in 2017 and 2018 at BATS in BermudaSequence Read Archive (SRA) Run identifier at the National Center for Biotechnology Information (NCBI) SRA_run_ID
A characterization of microbes at the San Pedro Ocean Time-series (SPOT) from 2005 to 2018, using SSU rRNA gene sequencing from two size fractions, with a universal primer set that amplifies from prokaryotes and eukaryotesNational Center for Biotechnology Information (NCBI) run accession number run_accession
Viral consortia in Stony Coral Tissue Loss Disease- affected, disease-exposed, and disease-unexposed coral colonies from a transmission experiment conducted on samples collected from Rupert’s Rock in St. Thomas, U.S. Virgin Islands in 2019SRA Run ID SRA_Run
Pool-seq data from wild populations of copepods in the North Sea from May 2014 (Evolutionary genomics of a copepod project)NCBI SRA Run number SRA_Run
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Funded by the U.S. National Science Foundation