Parameter describing general image analysis metrics.
Dataset | PI-Supplied Description | PI-Supplied Name |
---|---|---|
Fish densities sampled by Dual Frequency Identification Sonar (DIDSON) within Artificial Seagrass Units (ASU) in Back Sound, NC from June to October 2018 | Frame number | Frame |
Fish densities sampled by Dual Frequency Identification Sonar (DIDSON) within Artificial Seagrass Units (ASU) in Back Sound, NC from June to October 2018 | Frame number assigned to fish length (within +/- 5 frames of "Frame" to find best view for measuring the fish length) | FrameSample |
Fish densities sampled by Dual Frequency Identification Sonar (DIDSON) within Artificial Seagrass Units (ASU) in Back Sound, NC from June to October 2018 | Sample size of frames per recording (10 for MaxN = n; 1 for Maxfish = y) | Frames_sampled |
Fish densities sampled by Dual Frequency Identification Sonar (DIDSON) within Artificial Seagrass Units (ASU) in Back Sound, NC from June to October 2018 | Indicates whether this frame has the max number of fish observed in the sample (y/n) | MaxN |
Fish measurements sampled by Dual Frequency Identification Sonar (DIDSON) within Artificial Seagrass Units (ASU) in Back Sound, NC from July to September 2018 | Frame number | Frame |
Fish measurements sampled by Dual Frequency Identification Sonar (DIDSON) within Artificial Seagrass Units (ASU) in Back Sound, NC from July to September 2018 | Z-score of mean fish length of all fish in frame | L_z |
Growth and chlorophyll density of individual fragments of the coral Porites divaricata measured during a reciprocal transplant experiment conducted at three sites in Turneffe Atoll, Belize from February to July 2022 | Red channel intensity value of sample; measured as intensity of red color in image, 0-255 | R_fin |
Expression of heat shock protein 70 (HSP70) in larvae at 11 days post-fertilization (DPF) from experiments investigating heat priming in Nematostella vectensis | Mean gray value for Western blot band representing HSP70 as determined via ImageJ | HSP70 |
Expression of heat shock protein 70 (HSP70) in larvae at 11 days post-fertilization (DPF) from experiments investigating heat priming in Nematostella vectensis | Mean gray value for Western blot band representing tubulin as determined via ImageJ | Tubulin |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | Elapsed time (in seconds) from the start of the sample run to the current trigger. | ADC_time |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | cross-sectional area of largest contiguous blob in ROI;MATLAB regionprops function | Area |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | Area divided by Perimeter;;computed from MATLAB regionprops function output;;; | Area_over_Perimeter |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | Area divided by squared Perimeter;;computed from MATLAB regionprops function output;;; | Area_over_PerimeterSquared |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | Placeholder for old revision hardware | comparator_out |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | area of the smallest convex polygon that can contain the largest blob (area of the convex hull);MATLAB regionprops function | ConvexArea |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | perimeter of the smallest convex polygon that can contain the largest blob;MATLAB regionprops function; computed from ConvexHull | ConvexPerimeter |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | eccentricity of the ellipse that has the same second-moments as the largest blob (0 = circle; 1 = line segment);MATLAB regionprops function | Eccentricity |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | area divided by the area of the bounding box;MATLAB regionprops function | Extent |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | Hausdorff distance (measure of how far two subsets of a space are from each other) between the largest blob and itself after rotation by 180 degrees along the major axis;pixels;HausdorffDist.m by Z. Danziger; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/26738-hausdorff-dis... | H180 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | Hausdorff distance (measure of how far two subsets of a space are from each other) between the largest blob and itself after rotation by 90 degrees along the major axis;pixels;HausdorffDist.m by Z. Danziger; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/26738-hausdorff-dis... | H90 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | H90 divided by H180;;computed from HausdorffDist.m output;;; | H90_over_H180 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | H90 divided by Hflip;;computed from HausdorffDist.m output;;; | H90_over_Hflip |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | Hausdorff distance (measure of how far two subsets of a space are from each other) between the largest blob and itself after reflection across the major axis;HausdorffDist.m by Z. Danziger; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/26738-hausdorff-dis... | Hflip |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | Hflip divided by H180;;computed from HausdorffDist.m output;;; | Hflip_over_H180 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG01 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG02 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG03 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG04 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG05 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG06 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG07 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG08 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG09 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG10 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG11 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG12 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG13 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG14 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG15 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG16 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG17 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG18 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG19 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG20 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG21 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG22 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG23 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG24 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG25 |
Image data taken by an Imaging Flow CytoBot (IFCB) over Palmer Deep Canyon in February and March 2020. | sequential element of Histogram of Oriented Gradients (shape feature descriptors) for ROI;;HOG.m by O. Ludwig; MathWorks File Exchange; https://www.mathworks.com/matlabcentral/fileexchange/28689-hog-descripto... | HOG26 |