Virginia P. Edgcomb

Affiliation: Woods Hole Oceanographic Institution (WHOI)
Address: []
Orcid: 0000-0001-6805-381X

Project: Pickled Protists or Community Uniquely Adapted to Hypersalinity? (9 datasets)

DatasetLatest Version DateCurrent State
CTD cast temperature, salinity, oxygen, and other measurements from R/V Oceanus cruise OC454-02 in the Mediterranean Sea (Pickled Protists project)

Role: Principal Investigator

2011-01-03Final no updates expected
Cruise track data from ship's underway data acquisition system from R/V Oceanus cruise OC454-02 in the Mediterranean Sea (Pickled Protists project)

Role: Principal Investigator

2010-12-23Final no updates expected
Scientific sampling event log from R/V Atlantis cruise AT18-14 in the Eastern Mediterranean; 35.3 N 21.7 E (Pickled Protists project, DHAB Metazoans project)

Role: Principal Investigator

2011-12-21Final no updates expected
CTD profiles collected from the R/V Atlantis cruise AT18-14 from the Eastern Mediterranean Sea in 2011 (Pickled Protists project)

Role: Chief Scientist

2012-02-14Final no updates expected
454 pyrotags for Bacterial and Archaeal taxa in deep hypersaline anoxic basin (DHAB) halocline sediments from the R/V Atlantis AT18-14 cruise in the Eastern Mediterranean; 35.3 N 21.7 E in 2011 (Pickled Protists project)

Role: Principal Investigator

2015-03-19Final no updates expected
Data on microbial metatranscriptomics: Niskin vs. in situ sampler from the R/V Urania cruise in the Mediterranean Sea during 2012 (Pickled Protists project)

Role: Principal Investigator

2015-03-19Final no updates expected
Microbial metatranscriptomics: upper and lower halocline water column data from the R/V Urania cruise in the Mediterranean Sea during 2012 (Pickled Protists project)

Role: Principal Investigator

2015-03-19Final no updates expected
Microbial metatranscriptomics: upper and lower halocline water column data from the R/V Oceanus and R/V Urania (OC454-02) in the eastern Mediterranean Sea in 2009 (Pickled Protists project)

Role: Principal Investigator

2015-03-19Final no updates expected
454 pyrotags for Eukaryote taxa in deep hypersaline anoxic basin (DHAB) halocline sediments collected on R/V Atlantis cruise AT18-14 in the Eastern Mediterranean (35.3 N, 21.7 E) in 2011

Role: Principal Investigator

2015-05-22Final no updates expected

Project: Genetic and Metabolic Signatures of Marine Microorganisms in Oxygen Depleted and Varying Geochemical Seascapes (8 datasets)

DatasetLatest Version DateCurrent State
CTD profiles collected in support of molecular samples from B/O Hermano Gines cruises for the CARIACO Basin Time Series Station from May to November 2014 (CariacoMetaOmics project)

Role: Co-Principal Investigator

2016-07-22Final with updates expected
qPCR data from B/O Hermano Gines cruises in the CARIACO Basin Time Series Station from May to November 2014 (CariacoMetaOmics project)

Role: Principal Investigator

2016-07-22Final with updates expected
qPCR data from the B/O Hermano Gines cruises in the CARIACO Basin Time Series Station from May to November 2014 (CariacoMetaOmics project)

Role: Principal Investigator

2016-07-22Final with updates expected
Fluorescent in situ hybridization data from B/O Hermano Gines cruises for the CARIACO Basin Time Series Station from May to November 2014 (CariacoMetaOmics project)

Role: Principal Investigator

2016-07-22Final with updates expected
Radioisotope data from B/O Hermano Gines cruises in the CARIACO Basin Time Series Station from May to November 2014 (CariacoMetaOmics project)

Role: Principal Investigator

2016-07-22Final with updates expected
Microscopy data from B/O Hermano Gines cruises in the CARIACO Basin Time Series Station from May to November 2014 (CariacoMetaOmics project)

Role: Principal Investigator

2016-07-22Final with updates expected
Cariaco metagenomes/metatranscriptomes for samples collected at the CARIACO Basin Time Series Station 10.5˚N, 64.7˚W on CAR212_2 and CAR_216_2

Role: Principal Investigator

2017-10-12
Cariaco Meta-Omics iTAG datasets for samples collected at the CARIACO Basin Time Series Station 10.5˚N, 64.7˚W on CAR212_2 and CAR_216_2

Role: Principal Investigator

2017-10-12

Project: Collaborative Research: Delineating The Microbial Diversity and Cross-domain Interactions in The Uncharted Subseafloor Lower Crust Using Meta-omics and Culturing Approaches (11 datasets)

DatasetLatest Version DateCurrent State
Relative abundances of the diether lipid archaeol and tetraether lipids with zero, one, two and three rings and crenarchaeol from rock samples at different depths.

Role: Principal Investigator

2020-02-12Data not available
Diversity of archaeal intact polar lipids (IPLs) and changes in relative abundance of bacterial dietherglycerol lipids (DEGs) within the selected 11 samples at different depths

Role: Principal Investigator

2020-02-28Data not available
Archaeal core lipids, intact polar lipids (IPLs), and bacterial dietherglycerol (DEG) lipids in the drilling mud, subsampled from whole round core 29R3 and selected rock samples.

Role: Principal Investigator

2020-02-28Data not available
Supplementary Table 1: Results of CHNS analyses in rock samples at different depths and sample images.

Roles: Principal Investigator, Contact

2020-05-11Final no updates expected
Supplementary Table 2: Drill fluid contamination testiFMC in drilling. GC mass spectrometry measurements of concentrations of the tracers PFMD and Png fluid and sample materials

Roles: Principal Investigator, Contact

2020-05-12Final no updates expected
Supplementary Table 3A: Concentration of archaeal and bacterial lipid biomarkers, ratio of core vs intact polar lipids and average chain length of bacterial dietherglycerol lipids.

Roles: Principal Investigator, Contact

2020-06-22Final no updates expected
Supplementary Table 4A: Metatranscriptome data summary for cellular activities presented and statistics on sequencing and removal of potential contaminant sequences, FPKM values

Roles: Principal Investigator, Contact

2020-07-01Final no updates expected
Supplementary Table 4C: Statistics of reads retained through bioinformatic processing of iTAG data for the 11 samples and control samples and metatranscriptome data.

Roles: Principal Investigator, Contact

2020-05-28Final no updates expected
Supplementary Table 4B: Annotations for contigs within transcriptome libraries for the eleven samples that were manually curated for selected metabolic processes

Roles: Principal Investigator, Contact

2020-06-22Final no updates expected
Supplementary Table 3B: Replicate cell counts for the 11 samples and alkaline phosphatase activity measurements available for any of the 11 samples

Roles: Principal Investigator, Contact

2020-06-22Final no updates expected
IODP360 - Raman spectra of a core sample taken at the Atlantis Bank

Roles: Principal Investigator, Contact

2021-11-08Final no updates expected

Project: Collaborative Research: Hydrothermal Fungi in the Guaymas Basin Hydrocarbon Ecosystem (9 datasets)

DatasetLatest Version DateCurrent State
Porewater nutrient concentrations (NO3+NO2, NH4, and PO4) from pushcore samples collected at Guaymas Basin hydrothermal vents via Alvin dives on RV/Atlantis cruise AT42-05, Nov. 2018 and reported by Woods Hole Oceanographic Institution

Role: Principal Investigator

2019-07-15Final no updates expected
Sample log for hydrocarbon pushcore samples from Guaymas Basin hydrothermal vents, RV/Atlantis cruise AT42-05, Nov. 2018

Role: Principal Investigator

2019-07-15Final no updates expected
Porewater hydrocarbon concentrations in Alvin pushcore samples from Guaymas Basin hydrothermal vents, RV/Atlantis cruise AT42-05, Nov. 2018

Role: Principal Investigator

2019-07-15Final no updates expected
Sediment hydrocarbon concentrations in Alvin pushcore samples from Guaymas Basin hydrothermal vents, RV/Atlantis cruise AT42-05, Nov. 2018

Role: Principal Investigator

2019-07-15Final no updates expected
Sediment TN,TC and porewater DOC, DIC, DON concentrations from pushcore samples collected at Guaymas Basin hydrothermal vents via Alvin dives on RV/Atlantis cruise AT42-05, Nov. 2018

Role: Principal Investigator

2019-07-29Final no updates expected
Porewater nutrient, sulfide, and sulfate concentrations in Alvin pushcore samples collected from Guaymas Basin hydrothermal vents during R/V Atlantis cruise AT42-05 in November 2018 and analyzed at the Max Planck Institute for Marine Microbiology

Role: Co-Principal Investigator

2020-08-21Final no updates expected
Porewater sulfate and sulfide concentrations in Alvin pushcore samples collected from Guaymas Basin hydrothermal vents during R/V Atlantis cruise AT42-05 in November 2018 and analyzed at UNC Chapel Hill

Role: Co-Principal Investigator

2020-06-26Final with updates expected
Sediment delta-13C methane and concentrations from pushcore samples collected at Guaymas Basin hydrothermal vents via Alvin dives on RV/Atlantis cruise AT42-05, Nov. 2018

Role: Principal Investigator

2020-09-21Final no updates expected
Temperature profiles of hydrothermal sediments measured by HOV Alvin’s heat flow probe in Guaymas Basin hydrothermal vents, RV/Atlantis cruise AT42-05, Nov. 2018

Role: Co-Principal Investigator

2022-08-25Final no updates expected