Project: Fundamental Coral-Microbial Associations

Acronym/Short Name:Coral Microbial Relationships
Project Duration:2012-09 - 2016-08
Geolocation:Florida Keys, Federated States of Micronesia, Red Sea, & Bermuda

Description

Description from NSF award abstract:
Reef-building corals are in decline worldwide due in part to climate change and other human activities, and it is becoming increasingly important to understand what aspects of coral biology are degraded by environmental stress which then leads to coral mortality. It is now widely known that corals harbor communities of bacteria and archaea that are believed to play important roles in maintaining the health of their hosts, but we lack any appreciable understanding about the identity of the microbial associates regularly residing within healthy, reef-building corals. This project asks the central question: do reef-building corals harbor fundamental or persistent microbial associates that are symbiotic within their tissues? In order to address this hypothesis, the investigator will assess the identity of the bacterial and archaeal microbes using a variety of molecular and microscopy approaches that includes the identification and localization of a widespread group of coral bacterial associates belonging to the genus Endozoicomonas. The results of this study will then be used to develop additional questions about the role of these microbial associates in nutrient cycling and how they contribute to the health and survival of corals.


DatasetLatest Version DateCurrent State
A custom ARB database of SSU rRNA gene sequences from corals, as well representative cultivated and environmental sequences from public sources (Coral Microbial Relationships project)2021-06-10Final no updates expected
V4 amplicon sequencing of coral tissue collected from Micronesia, the Florida Keys, and Australia in 2013 (Coral Microbial Relationships project)2016-10-20Final no updates expected
Coral species list and site descriptions for studies conducted on the partial SSU rRNA genes of bacteria and archaea in the Florida Keys, Australia, and Micronesia in 2013. (Coral Microbial Relationships project)2016-10-20Final no updates expected
Site descriptions and physical environmental conditions in coral microbiomes in the Florida Keys during 2013 (Coral Microbial Relationships project)2016-10-19Final no updates expected
Accession numbers and images of coral samples taken in the Florida Keys during 2013 (Coral Microbial Relationships project)2016-10-19Final no updates expected
Sequence data accession numbers originating from coral and coral mucus mesocosm experiments conducted at the Bermuda Institute of Ocean Sciences in 20132016-08-01Final with updates expected
Bacterioplankton data from coral and coral mucus aquaria experiments conducted at Bermuda Institute of Ocean Sciences in 20132016-07-29Final no updates expected
Partial SSU rRNA genes of bacteria and archaea from reef seawater samples produced using 515F/806R and 515F/806RB primers from the Bermuda, Red Sea, and Federated States of Micronesia in 2013 (Coral Microbial Relationships project)2015-09-10Final no updates expected

People

Principal Investigator: Amy Apprill
Woods Hole Oceanographic Institution (WHOI)

Contact: Amy Apprill
Woods Hole Oceanographic Institution (WHOI)


Data Management Plan

Data Management Plan received by BCO-DMO on 10 August 2015. (10.13 KB)
08/11/2015