Award: OCE-1536776

Award Title: Patterns of Microbial Community Structure Within and Between Hadal Environments
Funding Source: NSF Division of Ocean Sciences (NSF OCE)
Program Manager: Michael E. Sieracki

Outcomes Report

Intellectual Merit: This project compared the types of microbes present in bottom water and surficial sediments of two of the deepest locations on Earth. These were the Kermadec Trench located off the north coast of New Zealand, and the Mariana Trench, mostly located within the United States Mariana Trench Marine National Monument, but also occupying a portion of the territorial waters of Micronesia. Trenches can be considered to be upside down mountain ranges. These two trench systems are separately from one another by ~6,000 kilometers. In this grant we compared the microbes in these two trenches using highly quantitative marker gene DNA sequencing and comparative genomics. In addition, the microbes were also examined in terms of their activity and growth characteristics. The results indicated that deep-sea microbial populations consist of a mixture of taxa descending from shallow waters above and taxa adapted to life at great depth, including extremes of high pressure and low temperature. Seawater depth, trench of collection, size fraction, sediment depth, and organic levels were all found to correlate with distinctive types of microorganisms (Figure 2). Long-term incubation of trench sediments at the pressures and temperatures of their natural environment dramatically changed the composition of the microbial community to one containing a majority of previously documented and cultured high pressure-adapted microbes. Seventy-nine draft genome sequences from trench microbes were obtained. Analyses of these genomes indicated that many of the same species are shared between these two widely separated trenches, but that trench-specific strains also exist. This work demonstrated that microbes in deep trenches can be shared across great geographic distances, presumably moving along ocean currents. Broader Impacts: A detailed description was provided of a free-falling and ascending instrument coupled with a pressure-retaining seawater sampling system. This instrument is of value to the deep-sea science community. The grant provided support for one PhD student, the training of 7 undergraduates (4 serving as coauthors on publications, two in PhD programs, one in a MD-PhD program), and provided the opportunity to host 5 visiting PhD students (Oregon State University, Princeton University, IIT, India, University of Aberdeen, and Southern University of Denmark). It was associated with numerous BCO-DMO datasets and 16 international presentations. Outreach included presentations to >60 middle/high school girls, a microbial ecology booth at the Birch Aquarium, a lecture to 160 K-12 teachers, audio/written interviews for "Science News for Students", numerous undergraduate and graduate lectures by the PI and PhD student, and service as instructor (PI) and TA (PhD student) in the NSF Polar Biology Training Course in Antarctica. Last Modified: 12/16/2019 Submitted by: Douglas H Bartlett
DatasetLatest Version DateCurrent State
Viable cell counts on the bacteria in the seawater collected in the Niskin bottles during Leggo drops 1 and 3 on R/V Falkor cruise FK141215 in the Challenger Deep, Mariana Trench in December 20142017-03-13Final no updates expected
Direct counts (flow cytometry) on microbes obtained by Niskin bottle and pressure-retaining sampler from the Leggo Lander on R/V Falkor cruise FK141215 in the Challenger Deep, Mariana Trench in December 20142017-03-13Final no updates expected
General nutrient data (averages) from Leggo drop 1 seawater collected by Niskin bottle on R/V Falkor cruise FK141215 in the Challenger Deep, Mariana Trench in December 20142017-03-13Final no updates expected
Culture-independent identification of bacteria present in the pressure-retaining seawater (PRS) sampler deployed during Leggo drop 1 from R/V Falkor cruise FK141215 in the Challenger Deep, Mariana Trench in December 20142017-03-13Final no updates expected
515F-926R 16S rRNA gene sequencing accessions from seawater and sediment samples from R/V Falkor FK141109 and R/V Thompson TN309 from the Mariana and Kermadec trenches, 2014 (Mariana Perspectives project)2017-12-13Final no updates expected
Colony forming units (CFUs) of water samples from Mariana and Kermadec trenches grown in 3 media from R/V Falkor FK141109, FK141215, and R/V Thompson TN309, 2014 (Mariana Perspectives project)2017-12-14Final no updates expected
Cell counts from hadopelagic samples in the Mariana and Kermadec trenches, collected on R/V Falkor FK141109, FK141215, and R/V Thompson TN309, 2014 (Mariana Perspectives project)2017-12-18Final no updates expected
Isolation of microbes from hadal water and sediments from Mariana and Kermadec trenches from R/V Falkor, R/V Thomas G. Thompson FK141109, TN309, FK141215, April to December 2014 (Mariana Perspectives project)2017-12-18Final no updates expected

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Principal Investigator: Douglas Bartlett (University of California-San Diego Scripps Inst of Oceanography)