Principal Investigator: Brook L. Nunn (University of Washington)
Co-Principal Investigator: William S Noble
Scientific Data~2019~6~Krayushkina, Dasha and Timmins-Schiffman, Emma and Faux, Jessica and May, Damon H. and Riffle, Michael and Harvey, H. Rodger and Nunn, Brook L.~https://doi.org/10.1038/s41597-019-0308-y~~~~~Growth phase proteomics of the heterotrophic marine bacterium Ruegeria pomeroyi~N~~10197931~10153871~OSTI~2022-12-17 04:05:03.430~
Journal of Proteome Research~2016~15~May, Damon H. and Timmins-Schiffman, Emma and Mikan, Molly P. and Harvey, H. Rodger and Borenstein, Elhanan and Nunn, Brook L. and Noble, William S.~10.1021/acs.jproteome.6b00239~~~~~An Alignment-Free ?Metapeptide? Strategy for Metaproteomic Characterization of Microbiome Samples Using Shotgun Metagenomic Sequencing~~2697 to 2705~10075936~10075936~OSTI~2018-09-24 21:01:45.933~
Mass Spectrometry Reviews~2017~~Pino, Lindsay K. and Searle, Brian C. and Bollinger, James G. and Nunn, Brook and MacLean, Brendan and MacCoss, Michael J.~10.1002/mas.21540~~~~~The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics~~~10075933~10075933~OSTI~2018-09-24 21:01:45.903~
Proteomes~2018~6~Riffle, Michael and May, Damon and Timmins-Schiffman, Emma and Mikan, Molly and Jaschob, Daniel and Noble, William and Nunn, Brook~10.3390/proteomes6010002~~~~~MetaGOmics: A Web-Based Tool for Peptide-Centric Functional and Taxonomic Analysis of Metaproteomics Data~~2~10075935~10075935~OSTI~2018-09-24 21:01:45.140~
Nature Climate Change~2016~6~Boyd, P. W. and Dillingham, P. W. and McGraw, C. M. and Armstrong, E. A. and Cornwall, C. E. and Feng, Y.-y. and Hurd, C. L. and Gault-Ringold, M. and Roleda, M. Y. and Timmins-Schiffman, E. and Nunn, B. L.~10.1038/nclimate2811~~~~~Physiological responses of a Southern Ocean diatom to complex future ocean conditions~~207 to 213~10075938~10075938~OSTI~2018-09-24 21:01:45.966~
The ISME Journal~2017~11~Timmins-Schiffman, Emma and May, Damon H and Mikan, Molly and Riffle, Michael and Frazar, Chris and Harvey, H R and Noble, William S and Nunn, Brook L~10.1038/ismej.2016.132~~~~~Critical decisions in metaproteomics: achieving high confidence protein annotations in a sea of unknowns~~309 to 314~10075937~10075937~OSTI~2018-09-24 21:01:45.873~
Proteomes~2018~6~Blank, Clemens and Easterly, Caleb and Gruening, Bjoern and Johnson, James and Kolmeder, Carolin and Kumar, Praveen and May, Damon and Mehta, Subina and Mesuere, Bart and Brown, Zachary and Elias, Joshua and Hervey, W. and McGowan, Thomas and Muth, Thilo~10.3390/proteomes6010007~~~~~Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework~~7~10075934~10075934~OSTI~2018-09-24 21:01:45.180~
Journal of Proteome Research~2019~~Saito, Mak A. and Bertrand, Erin M. and Duffy, Megan E. and Gaylord, David A. and Held, Noelle A. and Hervey, William Judson and Hettich, Robert L. and Jagtap, Pratik and Janech, Michael G. and Kinkade, Danie B. and Leary, Dasha and McIlvin, Matthew and M~10.1021/acs.jproteome.8b00761~~~~~Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing~~~10087888~10087888~OSTI~2019-10-15 17:01:53.153~
The ISME Journal~2019~14~Mikan, Molly P. and Harvey, H. Rodger and Timmins-Schiffman, Emma and Riffle, Michael and May, Damon H. and Salter, Ian and Noble, William S. and Nunn, Brook L.~https://doi.org/10.1038/s41396-019-0503-z~~~~~Metaproteomics reveal that rapid perturbations in organic matter prioritize functional restructuring over taxonomy in western Arctic Ocean microbiomes~~~10121161~10154398~OSTI~2024-02-14 15:03:02.906~
Scientific Reports~2018~8~Timmins-Schiffman, Emma and Mikan, Molly P. and Ting, Ying Sonia and Harvey, H. Rodger and Nunn, Brook L.~10.1038/s41598-018-27650-4~~~~~MS analysis of a dilution series of bacteria:phytoplankton to improve detection of low abundance bacterial peptides~~~10075932~10075932~OSTI~2018-09-24 21:01:44.406~
Journal of Proteomics~2018~173~Smith, Marie-Caroline and Timmins-Schiffman, Emma and Coton, Monika and Coton, Emmanuel and Hymery, Nolwenn and Nunn, Brook L. and Madec, Stéphanie~10.1016/j.jprot.2017.11.025~~~~~Differential impacts of individual and combined exposures of deoxynivalenol and zearalenone on the HepaRG human hepatic cell proteome~~89 to 98~10075939~10075939~OSTI~2018-09-24 21:01:45.233~