Award: OCE-1657766

Award Title: Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean
Funding Source: NSF Division of Ocean Sciences (NSF OCE)
Program Manager: David L. Garrison

Outcomes Report

The incorporation of nitrogen gas into biology is a fundamental process that is biochemically complex and expensive, and yet is also biogeochemically essential on Earth. Trichodesmium is a keystone nitrogen fixing microbe in the oceans, and yet there is much to be learned about its ecology and biochemistry. In this study we explored Trichodesmium in the laboratory and natural environment using advanced techniques of proteomics and x-ray spectroscopy. Key findings included the observation that field populations of large colonies were co-stressed by iron and phosphate as indicated by protein biomarkers, rather than singly limited as ecology models generally predict. In addition, analysis of single colonies of Trichodesmium demonstrated that dust particles containing iron could be identified within them, and that those colonies had specific biochemical responses in their proteome to the mineral phase related to iron acquisition and within their microbiome community. Finally a diel study of Trichodesmium in the laboratory provided evidence for simultaneous C and N fixation and the production of gas vesicles, and these results were incorporated into a buoyancy model that demonstrated a need for daytime nitrogen fixation to overcome buoyancy challenges of large mineral-laden colonies. Additional projects supported by this grant, including the development of Metatryp 2.0 software for proteomics taxonomic inference, and a spin-off project was developed for COVID-19 assay research. Last Modified: 02/18/2021 Submitted by: Mak A Saito
DatasetLatest Version DateCurrent State
Enzyme linked fluorescence (ELF) assays of Trichodesmium colonies collected from RV/Atlantis cruise AT39-05, Feb-Mar 20182019-05-02Data not available
Enzyme-linked fluorescence (ELF) analysis results from Trichodesmium colony incubations from RV/Atlantis cruise AT39-05, Feb-Mar 20182019-05-02Data not available
Single colony metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters during the R/V Atlantis cruise AT39-05 in March of 20182020-01-10Final no updates expected
Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, station BATS, and station ALOHA between 2000 and 20182020-01-10Final no updates expected
Trichodesmium sample provenance from samples collected in North Atlantic surface waters, station BATS, and station ALOHA between 2000 and 20182020-01-10Final no updates expected
Net tow metaproteome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes in units of normalized protein spectral counts from samples collected in the Atlantic and Pacific Ocean between 2000 and 20182020-04-30Final no updates expected
Net tow metaproteoome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes in units of normalized peptide spectral counts from samples collected in the Atlantic and Pacific Ocean between 2000 and 20182020-04-30Final no updates expected
FASTA file of sequences in Trichodesmium field metaproteomes mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes from samples collected in the Atlantic and Pacific Ocean between 2000 and 20182020-01-14Final no updates expected
Nitrite Oxidoreductase targeted metaproteomics from R/V Kilo Moana cruise KM1128 and R/V Falkor cruise FK160115 in the Central Pacific Ocean in 2011 and 20162020-04-21Final no updates expected
Growth rates of the polar diatom Chaetoceros RS19 under various +Zn and +Co conditions from September 2019 (MM Saito project)2021-08-31Final no updates expected
Metal quotas (ratios of Metal:P) of the polar diatom Chaetoceros sp. RS19 in +Zn and +Co incubation studies from January 2020 (MM Saito project)2021-08-30Final no updates expected
Metal uptake rates of the polar diatom Chaetoceros RS19 in +Zn and +Co incubation studies from January 2020 (MM Saito project)2021-08-30Final no updates expected

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Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)