Project | Data Management Plan |
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Protistan, prokaryotic, and viral processes at the San Pedro Ocean Time-series | DMP_OCE-1737409_Fuhrman.pdf (139.08 KB) |
Principal Investigator: Jed A. Fuhrman (University of Southern California)
Co-Principal Investigator: David A Caron
ISME Communications~2022~2~Gleich, Samantha J. and Cram, Jacob A. and Weissman, Jake L. and Caron, David A.~https://doi.org/10.1038/s43705-022-00106-7~~~~~NetGAM: Using generalized additive models to improve the predictive power of ecological network analyses constructed using time-series data~~~10343434~10343434~OSTI~2022-07-27 17:03:15.720~
Environmental Microbiology~2022~~Ollison, Gerid A. and Hu, Sarah K. and Hopper, Julie V. and Stewart, Brittany P. and Smith, Jayme and Beatty, Jennifer L. and Rink, Laura K. and Caron, David A.~https://doi.org/10.1111/1462-2920.16137~~~~~Daily dynamics of contrasting spring algal blooms in Santa Monica Bay (central Southern California Bight)~~~10343432~10343432~OSTI~2022-07-27 17:03:17.250~
Nature Communications~2022~13~Yeh, Yi-Chun and Fuhrman, Jed A.~https://doi.org/10.1038/s41467-022-35551-4~~~~~Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure~N~~10473062~10387331~OSTI~2023-12-03 15:01:37.286~
ISME Communications~2022~2~Yeh, Yi-Chun and Fuhrman, Jed A.~https://doi.org/10.1038/s43705-022-00121-8~~~~~Contrasting diversity patterns of prokaryotes and protists over time and depth at the San-Pedro Ocean Time series~~~10341940~10366349~OSTI~2024-03-14 20:00:24.676~
Environmental Microbiology~2021~23~Yeh, Yi‐Chun and McNichol, Jesse and Needham, David M. and Fichot, Erin B. and Berdjeb, Lyria and Fuhrman, Jed A.~https://doi.org/10.1111/1462-2920.15553~~~~~Comprehensive <scp>single‐PCR 16S</scp> and <scp>18S rRNA</scp> community analysis validated with mock communities, and estimation of sequencing bias against <scp>18S</scp>~~p. 3240-3250~10277546~10367512~OSTI~2023-08-22 04:03:30.713~
Frontiers for Young Minds~2022~10~Weissman, Jake L. and Hou, Shengwei and Fuhrman, Jed A.~https://doi.org/10.3389/frym.2022.714713~~~~~Using DNA to Predict How Fast Bacteria can Grow~~~10343250~10343250~OSTI~2022-10-20 18:21:11.946~
The ISME Journal~2020~15~Long, Andrew M. and Hou, Shengwei and Ignacio-Espinoza, J. Cesar and Fuhrman, Jed A.~https://doi.org/10.1038/s41396-020-00773-1~~~~~Benchmarking microbial growth rate predictions from metagenomes~~~10277549~10192911~OSTI~2024-02-15 03:00:40.186~
mSystems~2021~6~Sieradzki, Ella T. and Morando, Michael and Fuhrman, Jed A.~https://doi.org/10.1128/mSystems.00245-21~~~~~Metagenomics and Quantitative Stable Isotope Probing Offer Insights into Metabolism of Polycyclic Aromatic Hydrocarbon Degraders in Chronically Polluted Seawater~~~10277550~10277550~OSTI~2022-10-20 18:21:11.960~
Proceedings of the National Academy of Sciences~2021~118~Weissman, Jake L. and Hou, Shengwei and Fuhrman, Jed A.~https://doi.org/10.1073/pnas.2016810118~~~~~Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns~~e2016810118~10277551~10277551~OSTI~2022-10-20 18:21:11.966~
mSystems~2021~6~McNichol, Jesse and Berube, Paul M. and Biller, Steven J. and Fuhrman, Jed A.~https://doi.org/10.1128/mSystems.00565-21~~~~~Evaluating and Improving Small Subunit rRNA PCR Primer Coverage for Bacteria, Archaea, and Eukaryotes Using Metagenomes from Global Ocean Surveys~~~10277548~10277548~OSTI~2022-10-20 18:21:11.973~
Trends in Microbiology~2019~27~Caron, David A. and Hu, Sarah K.~10.1016/j.tim.2018.10.009~~~~~Are We Overestimating Protistan Diversity in Nature?~~197 to 205~10107725~10107725~OSTI~2022-10-20 18:21:11.980~
Nature Microbiology~2020~5~Ignacio-Espinoza, J. Cesar and Ahlgren, Nathan A. and Fuhrman, Jed A.~10.1038/s41564-019-0628-x~~~~~Long-term stability and Red Queen-like strain dynamics in marine viruses~~265 to 271~10181991~10181991~OSTI~2022-10-20 18:21:11.986~
Environmental Microbiology~2018~20~Hu, Sarah K. and Liu, Zhenfeng and Alexander, Harriet and Campbell, Victoria and Connell, Paige E. and Dyhrman, Sonya T. and Heidelberg, Karla B. and Caron, David A.~10.1111/1462-2920.14259~~~~~Shifting metabolic priorities among key protistan taxa within and below the euphotic zone: Depth-related protistan metatranscriptomes~~2865 to 2879~10107726~10065840~OSTI~2022-10-20 18:21:11.993~
Global Ecology and Biogeography~2019~28~Leles, Suzana Gonçalves and Mitra, Aditee and Flynn, Kevin John and Tillmann, Urban and Stoecker, Diane and Jeong, Hae Jin and Burkholder, JoAnn and Hansen, Per Juel and Caron, David A. and Glibert, Patricia M. and Hallegraeff, Gustaaf and Raven, John A.~10.1111/geb.12853~~~~~Sampling bias misrepresents the biogeographical significance of constitutive mixotrophs across global oceans: XXXX~~418 to 428~10107729~10107729~OSTI~2022-10-20 18:21:12.0~
Nature Communications~2019~10~Sieradzki, Ella T. and Ignacio-Espinoza, J. Cesar and Needham, David M. and Fichot, Erin B. and Fuhrman, Jed A.~10.1038/s41467-019-09106-z~~~~~Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes~~~10107454~10107454~OSTI~2022-10-20 18:21:12.6~