Dataset: ADMB computer program for multispecies-biomass dynamics model (NW_AtlEcosysConnect project)

Release Date:2020-11-02Final with updates expectedVersion 1 (2014-12-12)Dataset Type:model results

Principal Investigator: Jeremy Collie (University of Rhode Island)

Student: Minho Kang (University of Rhode Island)

BCO-DMO Data Manager: Nancy Copley (Woods Hole Oceanographic Institution)


Program: Comparative Analysis of Marine Ecosystem Organization (CAMEO)

Project: CAMEO: Patterns of Connectivity in Northwest Atlantic Fishery Ecosystems (NW_AtlEcosysConnect)


Abstract

ADMB computer program for multispecies-biomass dynamics model.

This dataset includes the source computer code, an example data file, the executable program, and sample output. The sample biomass and catch data spans from 1979 to 2008 and is from the Northeast Shelf Large Marine Ecosystem. Regions for the analysis include: Georges Bank (GB), Gulf of Maine (GoM), and Southern New England (SNE). Model input is observed biomass and catch for multiple migrating and non-migrating fish species; model output includes predicted biomass for the species. The code was written for AD Model Builder by Minho Kang.  ADMB files are written as template files, e.g. multispecies.tpl. The template file is translated to C++, multispecies.cpp, which is compiled to multispecies.obj.

- source computer code: multispecies.tpl
- executable program: multispecies.exe
- example data file: multispecies.dat
- sample output: multispecies.rep
- description not available (not essential; generated automatically by ADMB): multispecies.cpp
- description not available (not essential; generated automatically by ADMB): multispecies.htp
- description not available (not essential; generated automatically by ADMB): multispecies.obj
- description not available (not essential; generated automatically by ADMB): multispecies.tds


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Related Publications

Results

Kang, Minho, "MULTI-SPECIES INTERACTIONS IN FISH POPULATIONS ON THE NORTHWEST ATLANTIC COASTAL SHELF" (2014). Open Access Master's Theses. Paper 356. https://digitalcommons.uri.edu/theses/356