Dataset: Seep sediment metagenome ANM1 from the R/V Atlantis AT15-53 cruise in the Santa Monica Basin during 2009 (Viruses in Methanotrophic Marine Ecosystems project)

Final no updates expectedVersion 19 January 2016 (2016-01-19)Dataset Type:Unknown

Principal Investigator, Contact: David L. Valentine (University of California-Santa Barbara)

BCO-DMO Data Manager: Stephen R. Gegg (Woods Hole Oceanographic Institution)

Program: Dimensions of Biodiversity (Dimensions of Biodiversity)

Project: Dimensions: The Role of Viruses in Structuring Biodiversity in Methanotrophic Marine Ecosystems (Viruses in Methanotrophic Marine Ecosystems)

Cite Dataset

Metagenomic sequence reads representing viruses from marine sediments at a methane seep — part of the Gordon and Betty Moore Marine Phage Metagenome Initiative

Location:
Pacific Ocean: Santa Monica Basin, offshore California; Depth 820m; Lat. 33.799N, Long. 118.646W

Related files and references:
Henn, M. R., Sullivan, M. B., Stange-Thomann, N., Osburne, M. S., Berlin, A. M., Kelly, L., … Chisholm, S. W. (2010). Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes. PLoS ONE, 5(2), e9083. doi:10.1371/journal.pone.0009083

Paul, B. G., Bagby, S. C., Czornyj, E., Arambula, D., Handa, S., Sczyrba, A., … Valentine, D. L. (2015). Targeted diversity generation by intraterrestrial archaea and archaeal viruses. Nature Communications, 6(1). doi:10.1038/ncomms7585

Related Datasets

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Related Publications

Methods, Results
Henn, M. R., Sullivan, M. B., Stange-Thomann, N., Osburne, M. S., Berlin, A. M., Kelly, L., … Chisholm, S. W. (2010). Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes. PLoS ONE, 5(2), e9083. doi:10.1371/journal.pone.0009083
Methods, Results
Paul, B. G., Bagby, S. C., Czornyj, E., Arambula, D., Handa, S., Sczyrba, A., … Valentine, D. L. (2015). Targeted diversity generation by intraterrestrial archaea and archaeal viruses. Nature Communications, 6(1). doi:10.1038/ncomms7585

Valentine, D. L. (2016) Seep sediment metagenome ANM1 from the R/V Atlantis AT15-53 cruise in the Santa Monica Basin during 2009 (Viruses in Methanotrophic Marine Ecosystems project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 19 January 2016) Version Date 2016-01-19 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/633015 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation