Dataset: Isolation, culturing, and sequencing of bacteria and viruses collected in Canoe Cove, Nahant, MA during 2010 (Marine Bacterial Viruses project)

Final no updates expectedDOI: 10.1575/1912/bco-dmo.658497.1Version 1 (2016-09-09)Dataset Type:experimental

Principal Investigator: Dr Libusha Kelly (Yeshiva University)

Co-Principal Investigator: Dr Martin Polz (Massachusetts Institute of Technology)

BCO-DMO Data Manager: Hannah Ake (Woods Hole Oceanographic Institution)

Project: How can bacterial viruses succeed in the marine environment? (Marine Bacterial Viruses)

Abstract

Isolation, culturing, and sequencing of bacteria and viruses collected in Canoe Cove, Nahant, MA during 2010 (Marine Bacterial Viruses project)

Cite Dataset

This data contains isolation, culturing, and sequencing of bacteria and viruses from the Nahant Vibrio and Phage Genome Collection. Vibrio and associated phage genomes isolated off the coast of Nahant, MA, USA. 

Related Datasets:

NCBI BioSample accessions for viruses and microbes: http://www.bco-dmo.org/dataset/658586

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Related Publications

Methods
Baym, M., Kryazhimskiy, S., Lieberman, T. D., Chung, H., Desai, M. M., & Kishony, R. (2015). Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes. PLOS ONE, 10(5), e0128036. doi:10.1371/journal.pone.0128036
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Eddy, S. R. (2011). Accelerated Profile HMM Searches. PLoS Computational Biology, 7(10), e1002195. doi:10.1371/journal.pcbi.1002195
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Finn, R. D., Coggill, P., Eberhardt, R. Y., Eddy, S. R., Mistry, J., Mitchell, A. L., … Bateman, A. (2015). The Pfam protein families database: towards a more sustainable future. Nucleic Acids Research, 44(D1), D279–D285. doi:10.1093/nar/gkv1344
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Hehemann, J.-H., Arevalo, P., Datta, M. S., Yu, X., Corzett, C. H., Henschel, A., … Polz, M. F. (2016). Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes. Nature Communications, 7(1). doi:10.1038/ncomms12860
Methods
Hunt, D. E., David, L. A., Gevers, D., Preheim, S. P., Alm, E. J., & Polz, M. F. (2008). Resource Partitioning and Sympatric Differentiation Among Closely Related Bacterioplankton. Science, 320(5879), 1081–1085. doi:10.1126/science.1157890

Kelly, L., Polz, M. (2016) Isolation, culturing, and sequencing of bacteria and viruses collected in Canoe Cove, Nahant, MA during 2010 (Marine Bacterial Viruses project). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2016-09-09 [if applicable, indicate subset used]. doi:10.1575/1912/bco-dmo.658497.1 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation