Dataset: Lake surface sediment and submarine canyon sediment bacterial V1-V3 iTag sequence libraries collected from CA and MN in 2012.

Final no updates expectedVersion Final (2017-10-19)Dataset Type:Cruise Results

Principal Investigator, Contact: Dr Benjamin Kimball Harrison (Central Michigan University)

Co-Principal Investigator: Dr Jake V. Bailey (University of Minnesota Twin Cities)

BCO-DMO Data Manager: Hannah Ake (Woods Hole Oceanographic Institution)

Program: Center for Dark Energy Biosphere Investigations (C-DEBI)

Project: Buried alive: Microbial responses to sediment flux with implications for the deep biosphere (Buried Alive)

Cite Dataset

Lake surface sediment and submarine canyon sediment bacterial V1-V3 iTag sequence libraries. Submarine Canyon Sediment Bacteria data are presented in Harrison et al (2018). Lake Surface Sediment Bacteria data are published in Harrison et al (2016).

Related Datasets

No Related Datasets

Related Publications

Methods, Results
Harrison, B. K., Myrbo, A., Flood, B. E., & Bailey, J. V. (2016). Identification of subannual patterns in microbial community signatures from individual sedimentary laminae using a freeze-coring approach. Limnology and Oceanography, 61(2), 735–747. doi:10.1002/lno.10250
Methods, Results
Harrison, B. K., Myrbo, A., Flood, B. E., & Bailey, J. V. (2018). Abrupt burial imparts persistent changes to the bacterial diversity of turbidite-associated sediment profiles. Geobiology, 16(2), 190–202. doi:10.1111/gbi.12271
Methods
Bartram, A. K., Lynch, M. D. J., Stearns, J. C., Moreno-Hagelsieb, G., & Neufeld, J. D. (2011). Generation of Multimillion-Sequence 16S rRNA Gene Libraries from Complex Microbial Communities by Assembling Paired-End Illumina Reads. Applied and Environmental Microbiology, 77(11), 3846–3852. doi:10.1128/aem.02772-10
Methods
Muyzer, G., De Waal, E. C., & Uitterlinden, A. G. (1993). Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Applied and Environmental Microbiology, 59(3), 695-700.

Harrison, B. K., Bailey, J. V. (2017) Lake surface sediment and submarine canyon sediment bacterial V1-V3 iTag sequence libraries collected from CA and MN in 2012.. Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version Final) Version Date 2017-10-19 [if applicable, indicate subset used]. http://lod.bco-dmo.org/id/dataset/717352 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

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Funded by the U.S. National Science Foundation