Dataset: NCBI accessions for raw RNA-seq fastq in 380 and 750 uatm CO2 from experiments conducted at the University of Southern California: deep metatranscriptomic sequencing of Trichodesmium enrichment cultures (HiCO2_AdaptCyano project)

Final no updates expectedVersion (2018-02-14)Dataset Type:experimental

Principal Investigator: David A. Hutchins (University of Southern California)

Co-Principal Investigator: Eric A. Webb (University of Southern California)

BCO-DMO Data Manager: Nancy Copley (Woods Hole Oceanographic Institution)


Project: Adaptation of key N2-fixing cyanobacteria to changing CO2 (HiCO2_AdaptCyano)

Project: Collaborative Research: Iron and phosphorus balanced limitation of nitrogen fixation in the oligotrophic ocean (TriCoLim)

These data were derived from laboratory-maintained Trichodesmium erythraeum cultures and contain accessions and links to raw RNA-seq fastq files in NCBI’s Gene Expression Omnibus, accessible through GEO Series accession number GSE94951. The sample accession numbers corresponding to the low and high CO2 samples from this work are GSM2492342, GSM2492343, GSM2492344, and GSM2492345.

These data were reported in the paper (Lee et al., 2017)  

 

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Methods, Results

Lee, M. D., Webb, E. A., Walworth, N. G., Fu, F.-X., Held, N. A., Saito, M. A., & Hutchins, D. A. (2017). Transcriptional Activities of the Microbial Consortium Living with the Marine Nitrogen-Fixing Cyanobacterium Trichodesmium Reveal Potential Roles in Community-Level Nitrogen Cycling. Applied and Environmental Microbiology, 84(1), e02026–17. doi:10.1128/aem.02026-17