This is a demo website that is currently being tested. Please send feedback to feedback@bco-dmo.org

Dataset: NCBI accession numbers and related metadata from a study of transcriptomic response of Emiliania huxleyi to 2-heptyl-4-quinolone (HHQ)

Final no updates expectedDOI: 10.26008/1912/bco-dmo.773272.1Version 1 (2019-07-16)Dataset Type:experimental

Kristen E. Whalen (Principal Investigator)

Elizabeth Harvey (Co-Principal Investigator)

Shannon Rauch (BCO-DMO Data Manager)

Project: Collaborative Research: Building a framework for the role of bacterial-derived chemical signals in mediating phytoplankton population dynamics (HHQSignals)

Abstract

NCBI accession numbers and related metadata from a study of transcriptomic response of Emiliania huxleyi to 2-heptyl-4-quinolone (HHQ). Sequences from this study are available at the NCBI GEO under accession series GSE131846 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?&acc=GSE131846

Cite Dataset

XXX

Views

XX

Downloads

X

Citations

Sequences from this study are available at the NCBI GEO under accession series GSE131846 https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?&acc=GSE131846

Related Datasets

No Related Datasets

Related Publications

Methods
Bolger, A. M., Lohse, M., & Usadel, B. (2014). Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, 30(15), 2114–2120. doi:10.1093/bioinformatics/btu170
Methods
Ewels, P., Magnusson, M., Lundin, S., & Käller, M. (2016). MultiQC: summarize analysis results for multiple tools and samples in a single report. Bioinformatics, 32(19), 3047–3048. doi:10.1093/bioinformatics/btw354
Methods
Guillard, R. R. L. (1975). Culture of Phytoplankton for Feeding Marine Invertebrates. Culture of Marine Invertebrate Animals, 29–60. doi:10.1007/978-1-4615-8714-9_3
Methods
Kersey, P. J., Allen, J. E., Allot, A., Barba, M., Boddu, S., Bolt, B. J., … Yates, A. (2017). Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. Nucleic Acids Research, 46(D1), D802–D808. doi:10.1093/nar/gkx1011
Methods
Love, M. I., Huber, W., & Anders, S. (2014). Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biology, 15(12). doi:10.1186/s13059-014-0550-8

Whalen, K., Harvey, E. (2020) NCBI accession numbers and related metadata from a study of transcriptomic response of Emiliania huxleyi to 2-heptyl-4-quinolone (HHQ). Biological and Chemical Oceanography Data Management Office (BCO-DMO). (Version 1) Version Date 2019-07-16 [if applicable, indicate subset used]. doi:10.26008/1912/bco-dmo.773272.1 [access date]

Terms of Use

This dataset is licensed under Creative Commons Attribution 4.0.


If you wish to use this dataset, it is highly recommended that you contact the original principal investigators (PI). Should the relevant PI be unavailable, please contact BCO-DMO (info@bco-dmo.org) for additional guidance. For general guidance please see the BCO-DMO Terms of Use document.

NSF Logo©2020 Biological and Chemical Oceanography Data Management Office.
Funded by the U.S. National Science Foundation