Dataset: Sample information for metaproteomic samples taken from Station 2 from R/V Knorr KN210-04 in the Western Atlantic Ocean between Uruguay and Barbados from March 2013

Preliminary and in progressVersion 1 (2022-06-13)Dataset Type:Cruise Results

Principal Investigator: Mak A. Saito (Woods Hole Oceanographic Institution)

Co-Principal Investigator: Matthew R. McIlvin (Woods Hole Oceanographic Institution)

BCO-DMO Data Manager: Danie Kinkade (Woods Hole Oceanographic Institution)


Program: Ocean Carbon and Biogeochemistry (OCB)

Program: Center for Chemical Currencies of a Microbial Planet (C-CoMP)

Program: Center for Chemical Currencies of a Microbial Planet (C-CoMP)

Project: Dissolved Organic Matter Composition in the Deep Atlantic Ocean (Deep Atlantic DOM)

Project: Deep Dissolved Organic Matter Multi-omics Analyses (DeepDom Multi-omics)


Abstract

This dataset includes metadata from metaproteomic samples collected at Station 2 during the R/V Knorr Cruise KN210-04 in the Western Atlantic Ocean between Uruguay and Barbados in 2013. The accompanying total spectral counts for proteins and peptides from these samples are available on the PRoteomics IDEentifications Database (PRIDE) under Project PXD034035.

The dataset includes total spectral counts for proteins and peptides. Four files and a link to raw data at the domain repository are included:

1) Sample metadata file with station locations, depth, time of collection and sample IDs described by this BCO-DMO page. (original file name: DeepDOM_sample_metadata_for_OPP.csv)

2) Raw mass spectral data files are available on PRIDE and ProteomeXchange:

ProteomeXchange title: Microbial Metaproteome from the Western Atlantic Ocean DeepDOM KN210-04 Expedition

ProteomeXchange accession: PXD034035

 Project Webpage: http://www.ebi.ac.uk/pride/archive/projects/PXD034035

 FTP Download: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/05/PXD034035


Related Datasets

IsSupplementTo

Dataset: http://www.ebi.ac.uk/pride/archive/projects/PXD034035
Saito, M. A., McIlvin, M. R. (in prep) Microbial Metaproteome from the Western Atlantic Ocean DeepDOM KN210-04 Expedition. Proteomics Identifications Database (PRIDE). URL: https://www.ebi.ac.uk/pride/archive/projects/PXD034035

Related Publications

Methods

McIlvin, M. R., & Saito, M. A. (2021). Online Nanoflow Two-Dimension Comprehensive Active Modulation Reversed Phase–Reversed Phase Liquid Chromatography High-Resolution Mass Spectrometry for Metaproteomics of Environmental and Microbiome Samples. Journal of Proteome Research, 20(9), 4589–4597. doi:10.1021/acs.jproteome.1c00588