Dataset: Single Nucleotide Polymorphism (SNP) data from Palumbi laboratory at Stanford University Hopkins Marine Station from 2010 to 2013 (OMEGAS-MaS project)

Single Nucleotide Polymorphism for each of the Strongylocentrotus purpuratus genes from the GLEAN3 genome build.

Data structure: Fractions are allele frequency values. Location, Day samples (D1 or D7), and CO2 level (385 or 1000) are listed.

Data are for each of the S. purpuratus genes from the GLEAN3 genome build.

Parameter Names/Definitions:
GLEAN ID: ID code
POS: base position
Random trails larger than observed value (running record): no units
Sample ID code format: State_Site_Tidal Height_:
OR: Oregon
FC: Fogarty Creek Site
ST: Strawberry Hill
BD: Bodega Bay
NC: Northern California
VD: Van Damme
CC: Central California
SH: Sand Hill Bluff
TP: Terrace Point
SB: Santa Barbara region
AL: Alegria

Resulting Publications:
2013. Pespeni, M. E. Sanford, B. Gaylord, T. M. Hill, J. D. Hosfelt, H. Jaris, M. LaVigne, E. Lenz, A. D. Russell, M. K. Young, S. R. Palumbi. Evolutionary change during experimental ocean acidification. Published online before print April 8, 2013, http://dx.doi.org/10.1073/pnas.1220673110

Pespeni MH, Barney BT, Palumbi SR (2012) Differences in the regulation of growth and biomineralization genes revealed through long-term common garden acclimation and experimental genomics in the purple sea urchin. Evolution 67(7): 1901–1914. doi:10.1111/evo.12036