A genetic sequence; e.g. the order of nucleotides in DNA or RNA
Dataset Name | Dataset Brief Description | PI-Supplied Parameter Description | PI-Supplied Parameter Name |
---|---|---|---|
Accession numbers | Palatability of non-native alga | Gene name | sequence_types |
Deep-sea larvae for microbiome study | Deep-sea larvae for microbiome study | Link to the larval 28S genetic sequence data in the Dryad repository doi:10.5061/dryad.sqv9s4n18 with specimen identifier, associated with the taxon in the Occurrence record. Darwin Core term http://rs.tdwg.org/dwc/terms/associatedSequences | associatedSequences |
Diatom amplicon sequencing variants from Narragansett Bay 2008-2014 | Diatom amplicon sequencing variants from Narragansett Bay 2008-2014 | Amplicon Sequence Variant (ASV) obtained from sequence processing | ASV |
FASTA file of protein identifications (MetZyme 0.2) | FASTA file of protein identifications from KM1128 | Precursors from all METZYME stations | sequence |
Gnathiid blood meal identification results | The mtDNA sequence entered into BLAST | BLAST_sequence | |
HRR 18S full-length sequence BLAST results | HRR 18S full-length sequence BLAST results | OTU sequence generated from the HRR data | Sequence_ID |
HRR Metabarcoding | HRR metatranscriptome | OTU sequence generated from the HRR data | Sequence_ID |
Mariana Back-arc Macrofauna 2014 | Macrofauna collected on colonization panels at Snail Vent Field on the Mariana Back-arc in 2014 | Genetic sequence information associated with the Occurrence. We provide a full URL path; the sequence identifier at the end of the URL, starting with SNLBE, is persistent | associatedSequences |
Mesocosm microbial analyses results | Amplicon Sequence Variant (ASV) unique DNA base pair sequence of the V4-V5 region of the 16S rRNA gene; A = adenine; C = cytosine; G = guanine; T = thymine | Sequence | |
Metabarcoding zooplankton at station ALOHA: OTU tables and fasta files | Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU | Query sequence (BLAST qseqid); header description of representative sequence from fasta file | NCBI_query_sequence_id |
Neocalanus flemingeri incubation experiment: gene expression | Sequence identification using Trinity identification of assembled transcripts | seq_id | |
Nmarina targeted proteome | Nmarina targeted proteome | Peptide sequences of the isotopically labelled peptide standards used to quantify the target proteins | Peptide_sequence |
OC1703A Sediment nifH amplicon sequences | OC1703A Sediment nifH amplicon sequences | PCR primer sequences | PCR_primers |
OC1703A Sediment nifH amplicon sequences | OC1703A Sediment nifH amplicon sequences | Illumina adapter sequences | Sequencing_adapters |
OTU and Sequences | OTU and sequences | DNA sequence | DNA_Sequence |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from April at 150m depth at SPOT | April_150m_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from April at 150m depth at SPOT | April_150m_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from April at 5m depth at SPOT | April_5m_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from April at 5m depth at SPOT | April_5m_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from April at 890m depth at SPOT | April_890m_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from April at 890m depth at SPOT | April_890m_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from April at the surface at Catalina Island | April_CAT_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from April at the surface at Catalina Island | April_CAT_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from April at the DCM at SPOT | April_DCM_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from April at the DCM at SPOT | April_DCM_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from April at the surface at the Port of Los Angeles | April_POLA_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from April at the surface at the Port of Los Angeles | April_POLA_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from Jan at 150m depth at SPOT | Jan_150m_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from Jan at 150m depth at SPOT | Jan_150m_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from Jan at 5m depth at SPOT | Jan_5m_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from Jan at 5m depth at SPOT | Jan_5m_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from Jan at 890m depth at SPOT | Jan_890m_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from Jan at 890m depth at SPOT | Jan_890m_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from Jan at the surface at Catalina Island | Jan_CAT_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from Jan at the surface at Catalina Island | Jan_CAT_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from Jan at the DCM at SPOT | Jan_DCM_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from Jan at the DCM at SPOT | Jan_DCM_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from Jan at the surface at the Port of Los Angeles | Jan_POLA_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from Jan at the surface at the Port of Los Angeles | Jan_POLA_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from July at 150m depth at SPOT | July_150m_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from July at 150m depth at SPOT | July_150m_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from July at 5m depth at SPOT | July_5m_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from July at 5m depth at SPOT | July_5m_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from July at 890m depth at SPOT | July_890m_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from July at 890m depth at SPOT | July_890m_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from July at the surface at Catalina Island | July_CAT_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from July at the surface at Catalina Island | July_CAT_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from July at the DCM at SPOT | July_DCM_cDNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | DNA sequences from July at the DCM at SPOT | July_DCM_DNA | |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | RNA(cDNA) sequences from July at the surface at the Port of Los Angeles | July_POLA_cDNA |