| 16S V4 rRNA gene tag sequences from reef seawater samples collected in the Florida Keys and the U.S. Virgin Islands in 2019-2020 | | Qubit 2.0 fluorometer (ThermoFisher Scientific) |
| Grazing rates of Euphausia crystallorophias from RVIB Nathaniel B. Palmer NBP1801 in the Ross Sea, Jan.-Feb. 2018 | Device used specifically to detect chlorophyll fluorescence emission from each krill sample. Used to calculate krill gut fluorescence.
| Turner 10-AU fluorometer |
| Estimated feeding rates of adult and nauplius copepod species on three phytoplankton species from the San Francisco estuary in 2013 | Turner 10AU fluorometer
| Fluorometer |
| Experimental results describing copepod gut evacuation time from species collected in the San Francisco estuary during 2013 | Turner 10AU
| Fluorometer |
| Experimental results describing the minimum time for copepod gut fluorescence by plate reader method analyzed at San Francisco State University during 2013 | Turner 10AU
| Fluorometer |
| Experimental results describing if sonication is needed for chlorophyll extraction by copepods in the San Francisco estuary conducted during 2013 | Turner 10AU
| Fluorometer |
| Experimental results describing Pseudodiaptomus marinus gut minimum fluorescence thresholds that were analyzed at San Francisco State University in 2013 | Turner 10AU
| Fluorometer |
| Temperature and pCO2 effects on survivability of 25 genotypes of Acropora cervicornis coral at Mote Marine Laboratory in Nov-Dec 2019 | Photochemical efficiencies in coral fragments were measured using an Imaging Pulse Amplitude Modulation (I-PAM) Chlorophyll fluorometer from Walz GmbH (Effeltrich, Germany)
| Walz imaging pulse amplitude modulation chlorophyll fluorometer |
| Aquaria water quality PAR measurements from full factorial study of Acropora cervicornis at Mote Marine Laboratory in Nov-Dec 2019 | Photochemical efficiencies in coral fragments were measured using an Imaging Pulse Amplitude Modulation (I-PAM) Chlorophyll fluorometer from Walz GmbH (Effeltrich, Germany)
| Walz imaging pulse amplitude modulation chlorophyll fluorometer |
| Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015 | | Pulse Amplitude Modulator fluorometry |
| Organismal physiological metrics from time series experiments on samples collected on R/V Atlantic Explorer cruise AE1910 in May 2019 | | Turner fluorometer with Amonium module |
| Data collected daily along the ship track in JGOFS format from ARSV Laurence M. Gould and RVIB Nathaniel B. Palmer cruises to the Southern Ocean from 2001-2003 as part of the Southern Ocean GLOBEC project. | Sea surface fluorometer readings in voltages, (range 0-5)
Chelsea model Mk III Aquatracka SN 088080 (NBP0103)
Turner 10-AU-005 Lamp: daylight 10-045, reference filter: 10-052, emission filter: 10-051, excitation filter: 10-050 (LMG0103, LMG0104, LMG0201, LMG0203, LMG0205, NBP0104, NBP0202, NBP0204)
| Fluorometer |
| Alongtrack data collected continuously by the ship's underway acquisition system from R/V Knorr cruise KN207-03 in the North Atlantic (transect from Ponta Delgada, Azores to Reykjavik, Iceland) in 2012 (NA-VICE project) | Wetlabs Wet-Star fluorometer located in the Hydro Lab clean seawater piping. A MetraByte A/D converter is used to convert the 0 - 5 volt dc fluorometer output to serial (count) data. Output: 0 - 5 VDC; 0 - 4095 counts.
| Fluorometer |
| Alongtrack data from ship's Data Acquisition System (DAS) from R/V Thomas G. Thompson cruise TN277 in the Eastern North Pacific Ocean in 2012 (POWOW project) | See the WetLabs ECO Fluorometer chacterization sheet (PDF) from TN277 (POWOW1) cruise.
| Fluorometer |
| Alongtrack data collected continuously by the ship's underway acquisition system from ARSV Laurence M. Gould cruise LMG1110 in the Southern Ocean in 2011 | WET Labs ECO-FL (Serial Number FLRTD-399); provides continuous operation when powered, with 6,000-m depth rating. Further information about this instrument is in the user's guide.
| Fluorometer |
| Alongtrack data collected continuously by the ship's underway acquisition system from R/V Knorr cruise KN207-01 in the southern tip of Nova Scotia to Bermuda in 2012 (SargassoSeaLipids project) | Wetlabs Wet-Star fluorometer located in the Hydro Lab clean seawater piping. A MetraByte A/D converter is used to convert the 0 - 5 volt dc fluorometer output to serial (count) data. Output: 0 - 5 VDC; 0 - 4095 counts.
| Fluorometer |
| Alongtrack data from R/V Atlantis AT15-61 in the Eastern Tropical South Pacific from January 2010 (Syne_ETSP project) | WetLabs Wet-Star fluorometer located in the Hydro Lab clean seawater piping. A MetraByte A/D converter is used to convert the 0-5 vdc fluorometer output to serial data. This device sets the output decimal point as necessary for best resolution, which results in a 1 vdc fluorometer value being represented as +01000.00 in the raw MetraByte serial stream.
| Fluorometer |
| Ammonia and urea-derived-N oxidation rates measured using 15N additions from San Pedro Ocean Time-series (SPOT) measured between 2014 to 2016 | | profiling natural fluorometer |
| Surface pCO2, bottle-corrected Chl a, and shipboard wind speed from cruises conducted during 2010, 2011, and 2012 off the Northeast coast of Brazil in the Amazon River Plume as part of the ANACONDAS project | | |
| Sub-seafloor metatranscriptomes from anaerobic Peru Margin sediments collected on R/V JOIDES Resolution Leg 201 in 2002 | We followed the manufacturer’s instructions for cDNA amplification, and the resulting quantity of cDNA was checked on a Nanodrop (Thermo Scientific) and Fluorometer (Qubit 2.0, Life Technologies).
| Fluorometer |
| Phytoplankton and nutrients from R/V Sagar Kanya, R/V Sagar Sampada SK256, SS263, SS273, SS286 in the N. Arabian Sea from 2009-2011 (Arabian Sea Noctiluca project) | | Fluorometer |
| Microbial enzyme activities: polysaccharide hydrolase activities in bulk seawater samples from the RV\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 | | |
| Microbial enzyme activities: peptidase activities in bulk seawater samples from the RV\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 | | mini fluorometer |
| Microbial enzyme activities: polysaccharide hydrolase activities of gravity filtered seawater samples from the RV\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 | | |
| Microbial enzyme activities: peptidase activities of gravity-filtered seawater samples from the RV\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 | | |
| Microbial enzyme activities: peptidase activities of sediment samples from the RV\Polarstern cruise ARKXXVII/3 in the Central Arctic Ocean and Laptev Sea, Aug-Sept. 2012 | | mini fluorometer |
| Fluorescence dissolved organic matter (fDOM) analysis of inhalant and exhalent water samples from sponges studied at an artificial reef off the coast of the Florida Keys, USA in August 2021 | | Horiba Aqualog scanning fluorometer |
| 16S rRNA gene amplicon sequences from cathodic poised potential experiments with subsurface crustal samples from CORK borehole observatories at North Pond on the Mid-Atlantic Ridge during R/V Atlantis cruise AT39-01 | Q-bit Fluorometer 3.0 (Thermo Fisher Scientific, Waltham, MA USA)
| Q-bit Fluorometer 3.0 |
| Bacterial communities and relative abundances of the pathogen Vibrio coralliilyticus in feces of coral reef fish collected on the north shore of Mo’orea, French Polynesia, Oct 2020 | The primers vcpARTR and vcpARTF were used to amplify metalloprotease genes and the amplicon was then cleaned using a genejet PCR purification kit (Thermo Fisher, MA); resultant DNA concentrations were acquired using Qubit (Thermo Fisher, MA). A standard curve was made using serial dilutions from 109 to 100 gene copies per µl template; the standard curve for V. coralliiyticus primers vcpARTR and vcpARTF had an efficiency of 106.2%; the standard curve for general bacteria primers 967F and 1046R had an efficiency of 92.3%.
| Qubit (Thermo Fisher, MA) |
| Two decibar averaged CTD profiles collected at the Bermuda Atlantic Time-series Study (BATS) site from October 1988 through December 2023 | Additional sensors for the CTD data include the Chelsea Aqua 3 Fluorometer
| Chelsea Aqua 3 fluorometer |
| BLAST results from the Bermuda Atlantic Time Series (BATS) site collected from the R/V Atlantic Explorer cruises in Feb. and Aug. 2012 (DimBio NABE project) | | |
| Sample log for 16S and 18S rDNA amplicons sequenced with 454 technology collected on the R/V Atlantic Explorer BATS site in 2012 (DimBio NABE project) | | |
| Underway data for Blue Heron cruise BH15-11 in the western arm of Lake Superior from August 2015 (Early Career Great Lakes research project, Novel Nutrient Paleoproxy project) | | |
| BioGeoChemistry from R/V Blue Heron BH07-09, BH07-17, BH07-19, BH08-01, BH08-11, BH08-19 in Lake Superior from 2007-2008 (CARGO project) | Turner 10-AU Fluorometer
Detailed Acquisition and Processing Metadata for All Parameters
Metadata generated from original file "2007 Great Lakes Biogeochem Data.xlsx, Sheet: Metadata" contributed by Bob Sterner
See Individual Deployments/Data Info for cruise specific sampling notes
| Turner 10-AU Fluorometer |
| Biogeochemical measurements from R/V Blue Heron BH10-01, BH10-06, BH10-13, BH10-22, BH09-SINC1 in the Lake Superior from 2009 to 2010 (SINC project) | Turner 10-AU Fluorometer
Detailed Acquisition and Processing Metadata for All Parameters
Metadata generated from original file "2010 Great Lakes Biogeochem Data.xlsx, Sheet: Metadata" contributed by Bob Sterner
See Individual Deployments/Data Info for cruise specific sampling notes.
| Turner 10-AU Fluorometer |
| Biogeochemical and microbial parameters collected during spatial surveys on a coral reef at Mo'orea's North Shore (French Polynesia) in September 2017, May 2019, and April 2022 | | Horiba Aqualog scanning fluorometer |
| Nutrients, nitrate isotopes, and DON isotopes data from samples collected in the Gulf of Mexico on R/V Nancy Foster cruises NF1704 and NF1802 in May 2017 and May 2018 | | Turner Trilogy fluorometer |
| CTD Bottle Data from R/V Kilo Moana, R/V Seward Johnson KM0703, SJ0609 in the tropical and subtropical Southwest Pacific, and tropical North Atlantic from 2006-2007 (DIAZOTROPHS project) | Seapoint
| Fluorometer |
| Trace metals, hydrography, and fluorescence from CTD casts on the RVIB Nathaniel B. Palmer (cruise NBP1704) in the Ross Sea, Antarctica from April to May 2017 | Calibrated prior to the cruise by SeaBird Scientific
| Fluorometer (in-situ chlorophyll fluorescence) WET Labs ECO-FL(RT)D deep chlorophyll fluorometer |
| Concentration of Fluorescein dye after release over corals in the Moorea, French Polynesia (Vermetids_Corals project) | | |
| Two decibar averaged CTD profiles collected during BATS Validation (BVAL) cruises from April 1991 through July 2023 | | Fluorometer |
| Coral pulse amplitude modulation (PAM) throughout a heat temperature study conducted in aquaria at Brewer’s Bay, St. Thomas, The U.S. Virgin Islands in June of 2017 | | Diving Pulse amplitude modulation (Diving PAM) |
| Cell abundance, forward scatter, chlorophyll, growth rate, and FvFm.0 measurements from reciprocal transplant assays | mini-FIRe (Fluorescence Induction and Relaxation System) custom built by M. Gorbunov, Rutgers University.
| mini-FIRe |
| Cell abundance, forward scatter, chlorophyll, growth rate, and FvFm.0 measurements from reciprocal transplant assays | Trilogy fluorometer (Turner Designs, San Jose, CA)
| Trilogy fluorometer |
| Census of heat tolerance among Florida's threatened staghorn corals from a study of Acropora cervicornis conducted from August to October 2020 | | DIVING-PAM-II (Walz, Effeltrich, Germany) chlorophyll fluorometer |
| Measurements on each beaker’s final chl a concentration from larval food limitation experiments conducted on the sand dollar Dendraster excentricus | | Aquafluor Handheld Fluorometer |
| Measurements on each beaker’s initial chl a concentration from larval food limitation experiments conducted on the sand dollar Dendraster excentricus | | Aquafluor Handheld Fluorometer |
| Chlorophyll a and pheopigment concentrations from R/V New Horizon cruise NH1008 in Monterey Bay, near MBARI buoy M1 (36.747?N, 122.022?W); 2010 (GATEKEEPERS project) | Turner Designs
| Fluorometer |
| Chlorophyll concentrations from R/V Kaiyo-Maru cruise KY0103-01 and KY0103-02 in the Northwestern Sub-Arctic Pacific in 2001 (SEEDS I project) | | Fluorometer |
| Chlorophyll d15N in Lake Erie collected on NOAA GLERL weekly monitoring cruises from June to October 2017 | A submersible FluoroProbe, manufactured by bbe Moldaenke GmbH, Germany, was used to monitor in situ chlorophyll fluorescence and to estimate algal community composition. Used with factory calibration settings.
| FluoroProbe |
| Chlorophyll-a concentrations from CTD cast deployments and underway seawater inflow from Endeavor 532 and Endeavor 538 cruises in 2013 and 2014 | Turner Trilogy fluorometer
| |
| Chlorophyll-a and phaeophytin analyzed by fluorometry from samples collected on R/V Challenger in the Long Island Sound in 2007 | A TD-700 laboratory fluorometer was used. More information on this instrument is available in its datasheet.
| Fluorometer |
| Chlorophyll a from phytoplankton and microzooplankton experiments on the RVIB Nathaniel B. Palmer NBP0608 cruise in the Ross Sea, Southern Ocean during 2006 (CORSACS project, Antarctic microzooplankton project) | Turner Designs fluorometer, unspecified model.
| Fluorometer |
| Silicon Uptake Kinetics sampled aboard the R/V Pelican during during PE17-04 and PE17-20 along the Northern Gulf of Mexico, specifically the Louisiana Shelf region dominated by the discharge of the Mississippi River plume. | Quantification of bulk PDMPO was done using a Trilogy fluorometer (Turner Designs) using a crude-oil module. The sample matrix was hydrofluoric acid and boric acid. PDMPO was calibrated using a sequential addition of stock dye purchased from the vendor.
| Trilogy fluorometer (Turner Designs) |
| Water column data sampled aboard the R/V Pelican during August and September 2016 and May 2017 in Northern Gulf of Mexico, specifically the Louisiana Shelf region dominated by the discharge of the Mississippi River plume. | Quantification of Chlorophyll a and bulk PDMPO were done using a Trilogy fluorometer (Turner Designs). For Chlorophyll a, an acidification-method (acetone and HCl matrix) module was used; for PDMPO, a crude-oil module was used with a sample matrix of hydrofluoric acid and boric acid. Chlorophyll a was calibrated using a certified standard, PDMPO was calibrated using a sequential addition of stock dye purchased from the vendor.
| Trilogy fluorometer (Turner Designs) |
| Continuous CO2 data from a Lake Michigan transect between Milwaukee, Wisconsin and Muskegon, Michigan collected during 2017, 2018, 2019, and 2021 | | WETLabs flow-through fluorometer |
| Surface underway pCO2 from NOAA Ship Ronald H. Brown cruise RB-08-02 in the Southwest Atlantic sector of the Southern Ocean near South Georgia Island in 2008 (SO_GasEx project) | WetLabs WetStar chlorophyll fluorometer
| Fluorometer |
| Temperature, salinity, fluorescence, and dissolved O2/Ar ratios measured continuously underway onboard basin-wide transects of the North Pacific from Hong Kong to Long Beach, CA | | Seapoint Chlorophyll Fluorometer |
| Copepod gut pigment data from each of six experiments quantifying the ingestion by copepods of marine snow and phytoplankton at different phytoplankton growth phases | | Triology Laboratory Fluorometer (Turner Designs) |
| Fluorescence per phytoplankton cell from each of six experiments quantifying the ingestion by copepods of marine snow and phytoplankton at different phytoplankton growth phases | | Trilogy Laboratory Fluorometer, Turner Designs |
| Physiology measurements on collected coral pairs from Kaneohe Bay, Oahu, HI between July and December 2019 | Diving PAM (Walz GmbH, Germany): An underwater fluorometer used to study in situ photosynthesis by chlorophyll fluorescence analysis. This Dive PAM was used for measuring F0, Fm and Fv/Fm (photochemical efficiency)
| Diving PAM (Walz GmbH, Germany) |
| Microbial ESV counts for Acropora millepora corals exposed to Galaxaura seaweed | | Qubit 2.0 fluorometer |
| Microbial ESV counts for Acropora millepora corals exposed to Sargassum seaweed | | Qubit 2.0 fluorometer |
| Lesion frequencies and sizes after fish feces treatment on coral samples collected on the north shore of Mo’orea, French Polynesia, Oct 2020 to Jun 2021 | | Imaging PAM maxi (k-6) (Walz, Germany) |
| Coral photosynthetic efficiency (Pulse-Amplitude-Modulation, PAM) fluorometry from Acropora millepora corals exposed to seaweeds | A chlorophyll fluorometer for studying photosynthesis in and under water.
| PAM fluorometer (Diving-PAM, Walz, Germany) |
| Light measurements from coral-light experiments (Dufault, 2013, JEB) from Taiwan, 2010 (MCR LTER project, Climate_Coral_Larvae project) | Pulse amplitude-modulated fluorometer (Diving-PAM, Heinz Walz GmbH, Effeltrich, Germany)
| Fluorometer |
| Fluorescence and Physical Indicators for Sediment Cores from a Protected island in south Wilkinson Bay in the northeast portion of Barataria Bay, Louisiana in September 2018 | | Spex Fluorolog-3 spectrofluorometer (HORIBA Scientific, Edison, NJ) |
| Fluorescence and Physical Indicators for Sediments Cores from Barataria Basin, Louisiana, for March and November 2017 | | Spex Fluorolog-3 spectrofluorometer (HORIBA Scientific, Edison, NJ) |
| Concentrations of colored dissolved organic matter, dissolved organic carbon, and total phosphorous from experiments conducted at the University of Hawaii, Manoa in 2015 (Coral DOM2) | | Horiba Aqualog scanning fluorometer |
| CTD data collected on three NSF RAPID Plankton cruises on R/V Point Sur and R/V Pelican in the Gulf of Mexico during 2017-2018 | WETLabs Fluorometer used on PS1813 cruise; and on PE-18-21 cruise at stations 6-10.
| Fluorometer, WET,Labs |
| CTD data with beam attenuation and fluorescence from R/V Endeavor cruise EN198 in the North Atlantic (U.S. JGOFS NABE project) | | Fluorometer |
| CTD data collected on three NSF RAPID Plankton cruises on R/V Point Sur and R/V Pelican in the Gulf of Mexico during 2017-2018 | Fluorometer used on cruise PE18-18.
| Fluorometer, Chelsea, Aqua 3 |
| CTD data collected on three NSF RAPID Plankton cruises on R/V Point Sur and R/V Pelican in the Gulf of Mexico during 2017-2018 | Fluorometer used on cruise PE18-21 at stations 1-5.
| Fluorometer Seapoint |
| CTD Averaged Bottle Data from R/V Knorr KN197-08 in the Amazon River plume, NE coast of South America from May to June 2010 (ANACONDAS project) | WetLabs Model FLNTU s/n FLNTURD-304 Calibrated 10 March 2008
| Fluorometer |
| CTD hydrographic and nutrients data from R/V Endeavor cruise EN496 in July 2011 in the Gulf of Mexico (GoMX - N2 Fixation project) | Wet Labs WETStar flow through
| Wet Labs WETStar flow through |
| CTD hydrographic and nutrient data from R/V Endeavor cruise EN509 in May-June 2012 in the Gulf of Mexico (GoMX - N2 Fixation project) | Wet Labs WETStar flow through
| Wet Labs WETStar flow through |
| CTD Profile Data from R/V Knorr KN197-08 in the Amazon River plume, NE coast of South America from May to June 2010 (ANACONDAS project) | | Fluorometer |
| CTD profile data from R/V Endeavor cruise EN496 in July 2011 in the Gulf of Mexico (GoMX - N2 Fixation project) | Wet Labs WETStar flow through
| Wet Labs WETStar flow through |
| CTD profile data from R/V Endeavor cruise EN509 in May-June 2012 in the Gulf of Mexico (GoMX - N2 Fixation project) | Wet Labs WETStar flow through
| Wet Labs WETStar flow through |
| Environmental data from CTD during the Fall 2016 ESP deployment in Monterey Bay, CA | | Turner Cyclops 7 fluorometer |
| CTD bottle data from R/V Point Sur cruise PS1312 off the Central California Coast from June to July of 2013 (Diatom Group Si Prod project) | | Fluorometer, WET Labs ECO-AFL/FL |
| CTD and bottle sample data from R/V Melville cruise MV1101 in the Southern Ocean (30-60S) in 2011 (Great Calcite Belt project) | | Fluorometer - Seapoint |
| CTD and bottle data from R/V Roger Revelle RR1202 in the Southern Ocean (30-60S) in 2012 (Great Calcite Belt project) | | Fluorometer - Seapoint |
| Depth-binned CTD casts from Pelican PE17-02 on the Louisiana Shelf, Gulf of Mexico in July-August 2016 (Methane cycling in OMZs project) | A CTD-fluorometer is an instrument package designed to measure hydrographic information (pressure, temperature and conductivity) and chlorophyll fluorescence.
| WET Labs ECO CDOM Fluorometer |
| Time-binned CTD casts from R/V Pelican PE17-02 in the Louisiana Shelf, Gulf of Mexico from July to August 2016 (Methane cycling in OMZs project) | A CTD-fluorometer is an instrument package designed to measure hydrographic information (pressure, temperature and conductivity) and chlorophyll fluorescence.
| WET Labs ECO CDOM Fluorometer |
| CTD data from R/V Seward Johnson and R/V Knorr cruises collected in the Tropical Eastern Pacific from 2007-2009 (ETP project) | | C-Point chlorophyll fluorescence sensor |
| Two decibar averaged CTD profiles collected at the Hydrostation S site in the Sargasso Sea from October 1988 (cruise #60643) through December 2023 (cruise #61465) | | Chelsea fluorometer |
| CTD data with chemical and biological discrete samples from R/V Cape Hatteras cruise CH0711 in the Gulf of Mexico; 2007 (GoMX - N2 Fixation project) | Turner TD-700
| Turner TD-700 |
| CTD cast data from R/V Melville cruise MV1101 in the Southern Ocean (30-60S) in 2011 (Great Calcite Belt project) | | Fluorometer - Seapoint |
| CTD cast data from R/V Roger Revelle cruise RR1202 in the Southern Ocean (30-60S) in 2012 (Great Calcite Belt project) | | Fluorometer - Seapoint |
| Net primary production and nutrient data from R/V Hugh R. Sharp cruise HRS1414 CTD casts in the Mid and South-Atlantic Bight from July to August of 2014 (DANCE project) | Fluorimetric detector (NH4): Shimadzu RF-1501
| Shimadzu RF-1501 |
| Net primary production and nutrient data from R/V Hugh R. Sharp cruise HRS1414 CTD casts in the Mid and South-Atlantic Bight from July to August of 2014 (DANCE project) | | Turner Designs 10-AU fluorometer |
| Depth, temperature, oxygen, salinity, and fluorescence from 0-4500m depth CTD profiles conducted during the R/V Kilo Moana cruise KM1427 in the North Pacific Ocean in December of 2014 | | WET Labs ECO-AFL/FL |
| One decibar-averaged CTD profiles from R/V Atlantic Explorer cruise AE-X1103/AE1104 from the Sargasso Sea in 2011 (SargassoSeaLipids project) | Chelsea Aqua 3
| Fluorometer |
| CTD profiles from R/V Point Sur cruise PS1312 off the Central California Coast from June to July of 2013 (Diatom Group Si Prod project) | | Fluorometer, WET Labs ECO-AFL/FL |
| CTD Profiles from R/V Kilo Moana, R/V Seward Johnson KM0703, SJ0609 in the tropical and subtropical Southwest Pacific, and tropical North Atlantic from 2006-2007 (DIAZOTROPHS project) | Seapoint
| Fluorometer |
| Upcast CTD profiles from R/V Cape Hatteras cruise CH0212 cruise from the Louisiana Shelf (hypoxic zone) and Gulf of Mexico in 2012 (OMZ_Sulfur_Cycling project) | Fluorometer, Chelsea Aqua
| Fluorometer, Chelsea Aqua |
| Upcast CTD profiles from R/V Pelican cruise PE16-01 from the Louisiana Shelf (hypoxic zone) and Gulf of Mexico from 2013 to 2104 (OMZ_Sulfur_Cycling project) | Fluorometer, Seapoint
| Fluorometer, Seapoint |
| Upcast CTD profiles from R/V Pelican cruise PE16-01 from the Louisiana Shelf (hypoxic zone) and Gulf of Mexico in 2015 (OMZ_Sulfur_Cycling project) | Fluorometer, Chelsea Aqua
| Fluorometer, Chelsea Aqua |
| High resolution CTD and beam attenuation data from R/V Atlantis II cruise AII-119-5 in the North Atlantic in 1989 (U.S. JGOFS NABE project) | | Fluorometer |
| High resolution CTD and beam attenuation data from R/V Atlantis II cruises AII-119-4, AII-119-5 in the North Atlantic in 1989 (U.S. JGOFS NABE project) | | Fluorometer |
| Nutrients, chlorophyll-a, and light attenuation in the Delaware estuary from the R/V Hugh R. Sharp HRS110805DK, HRS111107DK, HRS120809DK, HRS121112DK, HRS1313, HRS1324 in 2011 - 2013 (PAPI: Photochemistry and Photoheterotroph Interactions project) | Turner Designs 10-AU fluorometer
| Fluorometer |
| Processed CTD data from six cruises of the DeZoZoo project from R/V Hugh R. Sharp in the Chesapeake Bay from 2010-2011 (DeZoZoo project) | WET Labs ECO-AFL/FL
| Fluorometer |
| Diatom growth rates from samples collected on the Gould cruise LMG1411 in the Western Antarctica Peninsula from 2014 (Polar Transcriptomes project) | Used to determine cell growth rates
| Turner 10-AU |
| Silica production rates and concentrations quantified using 32Si and PDMPO using samples from the R/V Point Sur cruise PS1312 along the Central California coast from June to July of 2013 (Diatom Group Si Prod project) | | Turner Designs 10AU fluorometer |
| Acropora cervicornis coral disease exposure experiment conducted on Summerland Key, FL from August to September of 2015 (Resilient Acerv project) | An imaging pulse amplitude fluorometer was used after the 2 day acclimation period to quantify the photochemical efficiency of each replicate coral.
| Imaging pulse amplitude fluorometer |
| Dissolved organic carbon and amino acid data from the NBP1207 cruise in Chile during 2012 | Used to measure fluorescence
| Turner Trilogy Fluorometer |
| Experimental results: Chlorophyll-a, POC, and cell volume of E. huxleyi at 3 pCO2 levels, 2011-2012 (E Hux Response to pCO2 project) | Turner Designs 10-AU fluorometer
| Fluorometer |
| Carbon and nitrogen content of E. huxleyi at 3 pCO2 levels, 2011-2012 (E Hux Response to pCO2 project) | Turner Designs 10-AU fluorometer
| Fluorometer |
| Experimental results: Emiliania huxleyi growth rates under different pCO2 levels from Bellingham, WA from 2011-2012 (E Hux Response to pCO2 project) | Turner Designs 10-AU fluorometer
| Fluorometer |
| Experimental results: cellular particulate DMSP from E. huxleyi at 3 pCO2 levels, 2011-2012 (E Hux Response to pCO2 project) | Turner Designs 10-AU fluorometer
| Fluorometer |
| Experimental results: Emiliania huxleyi growth rates under different pCO2 levels, 2011-2012 (E Hux Response to pCO2 project) | Turner Designs 10-AU fluorometer
| Fluorometer |
| Hydrolysis rates from bulk samples, plate reader results from RV/Endeavor EN556, 2015 (Patterns of activities project) | | |
| Hydrolysis rates from bulk water sample incubations from R/V Endeavor cruise EN556 in 2015 | | |
| Hydrolysis rates from incubations on particles obtained by gravity filtration of water collected on RV/Endeavor EN556 (Patterns of activities project) | Settings: 360 nm excitation, 460 emission.
| TECAN spectrafluor plus |
| Hydrolysis rates from gravity filtered samples, plate reader results from RV/Endeavor EN556, 2015 (Patterns of activities project) | | |
| Measurements of polysaccharide hydrolase activities in large volume mesocosm incubations RV/Endeavor EN584, July 2016 (Patterns of activities project) | | |
| Environmental data collected by CTD during a deployment of the Environmental Sample Processor (ESP) in Fall, 2014 in Monterey Bay, CA | for chlorophyll measurements
| Turner Cyclops 7 fluorometer (Turner Designs, Sunnyvale, CA, USA) |
| 5m intervals of CTD profiles from R/V New Horizon cruise NH1315 in the Eastern Tropical North Pacific (ETNP) during June 2013 | | Fluorometer, Seapoint |
| Porites PSII quantum yield after exposure to seaweed extracts in the Viti Levu, Fiji from May 2011 (Killer Seaweeds project) | Diving-PAM underwater fluorometer, Walz, Germany
| Fluorometer |
| Water quality data and Olympia oyster abundance counts from depth-specific sampling collected by boat in Fidalgo Bay, WA, during July 2017 | Used to measure fluorescence for the chlorophyll-a samples.
| Turner Trilogy Fluorometer model number 7200-000 |
| Experimental results describing Copepod fed phytoplankton mixtures that were analyzed at San Francisco State University in 2013 | Turner 10AU
| Fluorometer |
| Physiological metrics recorded at the end of experiments conducted to examine two coral species' responses to thermal stress | | Pulse amplitude-modulated (PAM) fluorometer (MINI-PAM, WALZ) |
| Vertical profile data collected by CTD in a subtropical, pelagic environment from R/V F.G. Walton Smith cruise WS15161 in the Straits of Florida in June 2015 (OSTRICH project) | The conductivity-temperature-depth (CTD) instrument package is a high resolution vertical profiling sampling system. It is instrumented with a set of environmental sensors including: Seabird CTD, Seabird dissolved O2, and Wet Labs Fluorometer (ECO).
| Wet Labs Fluorometer (ECO) |
| Pulse Amplitude Modulation (PAM) fluorometry readings from microcosm experiments from samples collected by R/V E.O. Wilson in the Gulf of Mexico, Alabama (En-Gen DMSP Cycling project) | A Walz Water PAM (pulse amplitude modulation) fluorometer was used to determine Fv:Fm. PAM fluorometers emit a range of pulsed lights to measure photosynthesis. The pulses of light are modulated, and the amplitude of the pulse of light governs its intensity. See more information from the manufacturer.
| Fluorometer |
| Underway fluorescence measurements along the ship track from R/V Thomas G. Thompson TT049, TT053 cruises in the Arabian Sea in 1995 (U.S. JGOFS Arabian Sea project) | Sharon Smith's Turner Designs fluorometer plumbed to the ship's SAIL system.
| Fluorometer |
| Fast Repetition Rate Fluorometry from CTD casts from R/V Roger Revelle KIWI9 cruiss in the Southern Ocean, 1998 (U.S. JGOFS AESOPS project) | A battery-powered FRR fluorometer with internal data logging (Chelsea Instruments, Ltd. FASTtracka) was used to measure FRR fluorometer data.
| Fluorometer |
| Maximum potential quantum efficiency of Photosystem II (Fv/Fm) for two coral species, Acropora hemprichii and Porites lobata, in response to thermal stress | | Pulse amplitude-modulated (PAM) fluorometer (MINI-PAM, WALZ) |
| Porites PSII quantum yield after exposure to Galaxaura thalli in the Viti Levu, Fiji from May 2011 (Killer Seaweeds project) | Diving-PAM underwater fluorometer, Walz, Germany
| Fluorometer |
| Bottle and CTD data from the CARNE ASADA project from R/V New Horizon GoCAL4 in the Gulf of California and eastern tropical North Pacific from July to August 2008 (CARNE ASADA project) | Seapoint fluorometer attached to a Seabird SBE 9 CTD
| Fluorometer |
| Processed CTD profile data from both rosettes (GTC and ODF) deployed on the US GEOTRACES GP17-OCE cruise on R/V Roger Revelle (RR2214) from December 2022 to January 2023 | | Seapoint fluorometer |
| Nutrients and bottle oxygen measured by the Scripps ODF group on the US GEOTRACES GP17-OCE cruise on R/V Roger Revelle (RR2214) from December 2022 to January 2023 in the South Pacific and Southern Oceans | | chlorophyll-a fluorometer (WetLabs ECO-FL-RTD) |
| Grazing experiment 4: Chlorophyll-a data for low-high pCO2 acclimated Rhodomonas sp. cultures from 2011-2016 (E Hux Response to pCO2 project) | Used to measure fluorescence.
| Turner Designs Trilogy Fluorometer |
| Grazing experiment 5: Chlorophyll-a data for low-high pCO2 acclimated Rhodomonas sp. cultures from 2011-2016 (E Hux Response to pCO2 project) | | Turner Designs Trilogy fluorometer |
| Grazing experiment 6: Chlorophyll-a data for low-high pCO2 acclimated Rhodomonas sp. cultures from 2011-2016 (E Hux Response to pCO2 project) | | Turner Designs Trilogy fluorometer |
| Grazing experiment 7: Chlorophyll-a data for low-high pCO2 acclimated Rhodomonas sp. cultures from 2011-2016 (E Hux Response to pCO2 project) | | Turner Designs Trilogy fluorometer |
| Microbial enzymatic activities from seawater and from particle-associated seawater communities from Greenland, August 2015 (Patterns of activities project) | | Promega Quantifluor solid-state single-cuvette fluorimeter |
| Gridded in-situ profiles from glider deployments in the San Pedro Channel, CA in 2013 and 2014 | WET Labs EcoPuck FL3 fluorometer (used for Chlorophyll a fluorescence).
| WET Labs EcoPuck FL3 |
| Chlorophyll fluorescence and turbidity backscatter data from Groves Creek salt marsh, Skidaway Island Georgia, USA, 2013-2015 | | Wetlabs FLNTUSB shuttered fluorometers |
| Fluorescent Dissolved Organic Matter (fDOM) data from Groves Creek salt marsh, Skidaway Island Georgia, USA, 2013-2015 | | Wetlabs FLCD shuttered fluorometers |
| GTC CTD profiles along with US GEOTRACES North Atlantic Transect from the R/V Knorr KN199-04 cruise in the subtropical N. Atlantic during 2010 (U.S. GEOTRACES NAT project) | Fluorometer
| Fluorometer |
| ODF CTD profiles along with US GEOTRACES North Atlantic Transect from the R/V Knorr KN199-04 cruise in the subtropical N Atlantic during 2010 (U.S. GEOTRACES NAT project) | Fluormeter
| Fluorometer |
| GTC one meter-averaged downcast CTD profiles along the US GEOTRACES North Atlantic Transect from the R/V Knorr KN204-01 cruise in the subtropical N. Atlantic during 2011 (U.S. GEOTRACES NAT project) | Fluorometer
| Fluorometer |
| ODF one meter-averaged downcast CTD profiles along the US GEOTRACES North Atlantic Transect from the R/V Knorr KN199-04 cruise in the subtropical N. Atlantic from 2010 (U.S. GEOTRACES NAT project) | Fluorometer - Seapoint SCF
SIOR/30L-Niskin Rosette/CTD casts were performed with a package consisting of a 12-bottle rosette
frame (SIO/STS), a 24-place carousel (SBE32) and 12 30L General Oceanics bottles with an absolute
volume of 30L each. Underwater electronic components consisted of a Sea-Bird Electronics SBE9plus
CTD with dual pumps (SBE5), dual temperature (SBE3plus), reference temperature (SBE35RT) dual
conductivity (SBE4C), dissolved oxygen (SBE43), transmissometer (WET Labs C-Star), fluorometer
(Seapoint SCF) and altimeter (Tritech LPRA-200 or Simrad 807). A second dissolved oxygen plus oxygen
temperature sensor (JFE Advantech RINKO-III) was incorporated into the data stream for future sensor
evaluation; it was not processed for this cruise
| Fluorometer |
| CDOM and FDOM full-depth Nisken profiles from high-resolution surveys of DOM optical properties conducted during the R/V Melville cruise MV1310 in the Gulf of Alaska (August 4–21, 2013) | FDOM: Aqualog spectrofluorometer (HORIBA Jobin Yvon Inc., NJ, USA)
| Aqualog spectrofluorometer (HORIBA Jobin Yvon Inc., NJ, USA) |
| Fluorescent characteristics of the dissolved organic exudates of two species of crustose coralline algae in two water treatments and their effect on the microbial community cell count | | Horiba Aqualog scanning fluorometer |
| Chlorophyll measurements from HHQ experiments conducted during the MesoHux mesocosm experiment, May 2017, Bergen, Norway | | Turner AU10 fluorometer |
| Ammonium (NH4) concentrations from multiple HOE-DYLAN cruises from July to September 2012 (C-MORE project) | | Fluorometer |
| Nitrite (NO2) concentrations from multiple HOE-DYLAN cruises, R/V Kilo Moana KM1215, KM1216, KM1217, KM1218, KM1219, KM1220, at Station ALOHA from July to September 2012 (C-MORE project) | | Fluorometer |
| Urea concentrations from multiple HOE-DYLAN cruises, R/V Kilo Moana KM1215, KM1217, KM1219, at Station ALOHA from July to September 2012 (C-MORE project) | | Fluorometer |
| Pigments from HPLC analysis of bottle samples collected aboard Oceanus from R/V Oceanus OC404-01, OC404-04, OC415-01, OC415-03 in the Sargasso Sea from 2004-2005 (EDDIES project) | Turner Fluorometer
| Fluorometer |
| Station CTD profiles from R/V Hugh R. Sharp HRS1610 in the Mid-Atlantic coastal waters from August 2016 (CyanateInTheSea project) | Fluorescence measurements were made using a Seabird SBE 911 conductivity-temperature-depth (CTD) unit combined with a fluorometer and an oxygen sensor mounted to a rosette sampler.
| Fluorometer (ECO-AFL/FL, WET Labs) |
| Water geochemistry from surface samples collected along the Neuse River, Neuse River Estuary, and Pamlico Sound in North Carolina between October and December 2016, following the passage of Hurricane Matthew | DOM Fluorescence. Calibrated with quinine sulfate solution after normalization to instrument’s water Raman peak.
| Cary Eclipse Spectrofluorometer |
| Imaging pulse amplitude modulator fluorometer data collected from Acropora cervicornis under different pH and temperature treatments from experiments at Summerland Key, Florida from July to September 2017 | | Imaging pulse amplitude modulator (IPAM) fluorometer |
| Imaging pulse amplitude modulator fluorometer data collected during Acropora cervicornis experiments at Summerland Key, Florida from July to September of 2016 | | IPAM MAXI/L Fluorometer with the IMAG-K6 camera |
| Vascular plant and microbial biomarkers of dissolved organic matter data from incubation experiments | Samples for CDOM absorbance were analyzed in a 1 cm cuvette on a Horiba Aqualog-UV-800-C (benchtop fluorometer). Fluorescence properties of FDOM were also determined using a Horiba Aqualog-UV-800-C.
| Horiba Aqualog-UV-800-C |
| Incubation experiment data from R/V Melville, R/V Roger Revelle cruises MV1101, RR1202 in the Southern Ocean (30-60S); 2011-2012 (Great Calcite Belt project) | Chlorophyll samples (100 mL) were filtered through 0.45µm 25-mm Millipore HA filters, frozen, extracted in 90% acetone and quantified fluorometrically.
| Fluorometer |
| Indian Ocean Sediment Trap Data collected from R/V Roger Revelle Cruise RR2201 in the Eastern Indian Ocean (Argo Basin) during February 2022 (BLOOFINZ-IO project) | Processed samples for Chl a and phaeopigments were filtered onto GF/F filters, extracted in acetone, and analyzed via the acidification method using a Turner 10-AU fluorometer.
| Turner 10-AU Fluorometer |
| Chlorophyll-a fluorescence from rocky intertidal zone moorings along the Oregon and California coasts, 2007-2015 (ACIDIC project) | WET Labs ECO FL fluorometer (http://www.wetlabs.com/eco-fl) with the following manufacturer specifications: excitation/emission wavelengths: 470/695 nm; sensitivity: 0.02 μg/L; and range: 0-125 μg/L.
| |
| CTD profiles from the Lake Superior collected during various R/V Blue Heron cruises between 2000-2002 (IRONMAN project) | | |
| Photophysiological responses of two dinoflagellate species used in natural high light exposure experiments (Protist Signaling project) | Used to measure FvFm
| Walz Water-PAM pulse amplitude-modulated fluorometer |
| Environmental sensor data from an underwater imaging system (ISIIS-3) collected during R/V Langseth cruise MGL2207 July 20-28 2022 and R/V Sally Ride cruise SR2317 August 10-20 2023 in the Northern California Current | | Fluorescence (WetLabs ECO-FLRT, S/N FLRT-2611) |
| Metadata for field dilution experiments to measure community microzooplankton grazing rates in Kaneohe Bay, HI from 2012-2013 (EAGER: Copepod nauplii project) | | |
| Field conditions during grazing experiments in Kaneohe Bay, HI during 2012-2013 (EAGER: Copepod nauplii project) | | |
| Biological oceanographic measurements, 16S rRNA gene amplicons and metagenomes from surface seawater taken from August 2017 to June 2021 at sites within and adjacent to Kāneʻohe Bay, Oʻahu, Hawaiʻi | Chlorophyll a measurements
| Turner 10AU fluorometer (Turner Designs, Sunnyvale, CA, USA) |
| Silicon uptake rates from samples collected during the R/V Point Sur cruise PS1312 along the Central California coast from June to July of 2013 (Diatom Group Si Prod project) | | Turner Designs 10AU fluorometer |
| Surface water quality samples from Kiritimati, Kiribati collected in 2014 and 2015 (RAPID Kiritimati project) | Aquafluor - AquaFluor Handheld Fluorometer (Turner Designs P/N: 998-0851)
| AquaFluor Handheld Fluorometer |
| Bottle data from R/V Kilo Moana KM1314 in the The North Pacific Ocean (Seattle to Honolulu, including Line P, Station ALOHA), Aug - Sept 2013 (Nitrification and Marine Planktonic Biodiversity project) | Seapoint Chlorophyll Fluorometer
| Fluorometer |
| CTD data from R/V Kilo Moana KM1314 in the The North Pacific Ocean (Seattle to Honolulu, including Line P, Station ALOHA), Aug - Sept 2013 (Nitrification and Marine Planktonic Biodiversity project) | Seapoint Chlorophyll Fluorometer
| Fluorometer |
| Winter survey data from Lake Erie from Mar 2023 to May 2024 | Fluorometric classification of phytoplankton was measured using a FluoroProbe (bbe Moldaenke GmbH, Schwentinental, Germany), and plankton taxonomic classification and cell enumeration was conducted by Aquatic Taxonomy Specialists (Malinta, OH).
| FluoroProbe |
| Lake Michigan water chemistry data, including dissolved and particulate phosphorus, chlorophyll a, carbon dioxide, total dissolved inorganic carbon, and dissolved organic carbon from 2017 to 2020 | The continuous CO2 monitoring system includes a WETLabs flow-through fluorometer.
| WETLabs flow-through fluorometer |
| Chlorophyll and pheopigments from filtered water samples from R/V Savannah cruises in the South Atlantic Bight (SAB) continental shelf off Long Bay, January-April 2012 (Long Bay Wintertime Bloom project) | Turner Designs Model 10AU fluorometer
| |
| Photosynthetic efficiency data from light stress in phytoplankton and dinoflagellate grazing response experiments from July of 2015 to September of 2018 | Photosynthetic efficiency measurements: Pulse-Amplitude Modulated Fluorometer: Walz Water PAM
| Pulse-Amplitude Modulated Fluorometer: Walz Water PAM |
| Prey and predator exposure results from light stress in phytoplankton and dinoflagellate grazing response experiments from August to September of 2018 | Photosynthetic efficiency measurements: Pulse-Amplitude Modulated Fluorometer: Walz Water PAM
| Pulse-Amplitude Modulated Fluorometer: Walz Water PAM |
| Prey-only exposure results from light stress in phytoplankton and dinoflagellate grazing response experiments from July of 2015 to July of 2017 | Photosynthetic efficiency measurements: Pulse-Amplitude Modulated Fluorometer: Walz Water PAM
| Pulse-Amplitude Modulated Fluorometer: Walz Water PAM |
| S. Atlantic light-profiling system data from R/V Oceanus OC404-01, OC404-04, OC415-01, OC415-03 in the Sargasso Sea from 2004-2005 (EDDIES project) | | Fluorometer |
| S. Atlantic profiling radiometer system (SPMR/SMSR) from R/V Weatherbird II WB0409, WB0413, WB0506, WB0508 in the Sargasso Sea from 2004-2005 (EDDIES project) | | Fluorometer |
| Visual substrate classification along transects from the nearshore reefs in Guam during 2014 (Reef Resilience in Guam project) | Diving PAM Underwater Fluorometer (Walz), an instrument for studying in situ photosynthesis of underwater plants.
| |
| Concentrations of mercury forms and ancillary parameters in size fractionated plankton samples and in water collected during 2014 from Long Island Sound and the adjacent shelf | Chlorophyll and phaeopigment were analyzed using a Trilogy fluorometer
| Trilogy fluorometer |
| Longtrack near-surface observations from R/V Atlantis II, R/V Endeavor cruises AII-119-4, AII-119-5, EN198 in the North Atlantic (U.S. JGOFS NABE project) | | Fluorometer |
| Concentration of inorganic nutrients, primary productivity measurements and phytoplankton cell concentration in seawater samples from the Malaspina 2010 Circumnavigation Expedition (VitaMaps project) | The fluorescence of the acetonic extracts was determined with a Turner Designs fluorimeter calibrated with a Chl a standard (Sigma-Aldrich); no phaeopigment correction was applied.
| Turner Designs fluorimeter |
| Laboratory effective quantum yield data for Orbicella faveolata recruits inoculated with either Symbiodinium microadriaticum or S. minutum (McIlroy,J. Phycology, 2016) (SymBioSys project) | | imaging-PAM (WALZ Mess- und Regeltechnik, Germany) |
| Laboratory results for maximum quantum yield data for Orbicella faveolata recruits inoculated with either Symbiodinium microadriaticum or S. minutum (McIlroy,J. Phycology, 2016) (SymBioSys project) | | imaging-PAM (WALZ Mess- und Regeltechnik, Germany) |
| Microbial alpha diversity of Acropora millepora samples from a coral-seaweed competition experiment in the Fiji Islands, Dec. 2014 | | Qubit 2.0 fluorometer |
| Microbial diversity and geochemistry of marine sediment mesocosm, Cape Lookout Bight, North Carolina | flourimeter Hoefer, Holliston, MA
| |
| Experimental results on the carbonate chemistry of mussel growth from the Bodega Marine Laboratory in 2013 (OMEGAS-MaS project) | Aqualflor 8000-010, Turner Designs
| handheld fluorometer |
| Experimental results on mussel growth at controlled pH and temperature from the lab Bodega Marine Laboratory in 2013 (OMEGAS-MaS project) | Aqualflor 8000-010, Turner Designs - to measure algal concentrations for feeding rates
| handheld fluorometer |
| Q incubation data from the R/V Melville (MV1405) cruise along the California coast during July 2014 | Chlorophyll a extraction was performed on the ship using 90% acetone at -20 deg C for 24 hours and measured via in vitro fluorometry.
| Turner Designs 10-AU fluorometer |
| Environmental measurements and high throughput sequencing data from samples collected at Martha's Vineyard Coastal Observation (MVCO) from 2013-2017 | | Turner Designs Aquafluor Handheld 800446 |
| Water characteristics measured in Narragansett Bay over two years, from March 2021 to March 2023 | Used to measure in situ chlorophyll a; Fluorometer model: Turner Designs C-FLUOR Probe (Model: 2120-000) coupled with a Turner Designs DataBank Datalogger.
| Turner Designs C-FLUOR Probe (Model: 2120-000) |
| Underway data from R/V New Horizon NH1208 in the transect between 35 and 50N along CLIVAR line P17N from 2012-2012 (OAPS project) | Model: Enviro-T 2800-000-C Serial: 20049847 MFG: Turner Designs
Location: AFT LAB-UCW line Owner: SIO/STS
CAL LAB: Wetlabs CAL DATE: 09-Sep-2011
| Fluorometer |
| Upper water column Ammonium measurements from R/V Knorr, R/V Melville, R/V Atlantis KN197-08, MV1110, AT21-04 in the Amazon River plume, 2010-2012 (ANACONDAS project) | Samples were analysed underway using a Turner Trilogy fluorometer (model #7200-000) with Turner UV fluorescence module (7200-041). Limit of detection was typically ~0.01uM NH4.
| Turner Trilogy fluorometer (model #7200-000) |
| Nighttime surface chlorophyll-a concentrations at the MBARI OA1 Buoy (36° 37.373’ N, 121 ° 54.000’ W) from June to October 2018 | | WETStar Fluorometer |
| CTD profiles from the Lake Superior collected during various R/V Blue Heron cruises between 2004-2006 (NILS project) | Wetlab Wetstar
| Fluorometer |
| N2O concentrations from San Pedro Ocean Time-series (SPOT) measured between 2014 to 2016 | | profiling natural fluorometer |
| Metagenomic data from site U1382B at North Pond (IODP 336), western flank of the mid-Atlantic Ridge from core samples collected in November of 2011 | | Quibit fluorometer (Thermo Scientific, Waltham, MA, USA) |
| Nutrient concentrations and stable isotope values for groundwater in nearshore shelf waters off Charleston, SC from June 2018 to August 2019 | | Turner Trilogy fluorometer |
| Nutrient summary from R/V Cape Hatteras cruise CH0212 from the Louisiana Shelf (hypoxic zone) and Gulf of Mexico, east-west transect through the hypoxic zone in 2012 (OMZ_Sulfur_Cycling project) | Fluorometer, Chelsea Aqua
| Fluorometer, Chelsea Aqua |
| Dissolved inorganic nutrient concentrations from ctd cast deployments and underway seawater inflow from Endeavor 532 and Endeavor 538 | Turner Trilogy fluorometer
| |
| Nutrients and chlorophyll from sea water samples collected in the Ross Sea from 2013-2015 (Ross Sea Microb Ecophys project) | Turner Designs fluorometer
| |
| Environmental and physical data associated with ocean acidification microbe adaptation from 2012-2014 | Used to measure fluorescence
| 10-AU Turner Designs Fluorometer |
| Alongtrack data collected continuously by the ship's underway acquisition system from R/V Oceanus OC473 in the western North Atlantic, 35-50 degrees North in 2011 (OAPS project) | Sea surface fluorometer, WetLabs Wet-Star fluorometer located in the Wet Lab clean seawater piping. A MetraByte A/D converter is used to convert the 0-5 vdc fluorometer output to serial data.
| Fluorometer |
| Physical data (sal, temp, wind, wave height) collected from January-March of 2014, 2015, and 2016 at the OIMB pier located in the Coos Bay entrance of the Oregon Coast | | Turner Design inline model |
| Standing stocks and rates for organic sulfur compounds during summer in the subarctic Northeast Pacific | | Turner Trilogy Fluorometer |
| Experimental results: Exopolymer production by phytoplankton under oxidative stress; conducted at the Thornton lab, TAMU from 2007-2012 (Diatom EPS Production project) | The quantum yield of photosystem II was measured using the saturating pulse method (Genty et al. 1989) using a pulse amplitude modulated fluorometer (PAM-210, Heinz Walz GmbH).
| Pulse Amplitude Modulated Fluorometer |
| Cluster (combined temperature, nutrient concentration, and CO2) results from laboratory experiments with Pseudo-nitzschia australis conducted from 2021 to 2022 | | Turner 10AU field fluorometer |
| CO2 experiment physiology and carbonate chemistry from laboratory experiments with Pseudo-nitzschia australis conducted from 2021 to 2022 | | Turner 10AU field fluorometer |
| N:P ratio experiment physiology and carbonate chemistry laboratory experiments with Pseudo-nitzschia australis conducted from 2021 to 2022 | | Turner 10AU field fluorometer |
| Single-factor temperature experiment physiology and carbonate chemistry from laboratory experiments with Pseudo-nitzschia australis conducted from 2021 to 2022 | | Turner 10AU field fluorometer |
| Underwater fluorescence on nearshore reefs in Guam during 2014 (Reef Resilience in Guam project) | Diving PAM Underwater Fluorometer (Walz), an instrument for studying in situ photosynthesis of underwater plants.
| |
| Fluorescence from PAM fluorometer from fishing vessels in the Southern California Bight off Huntington Beach in 2012 (SoCalPlumeEx2012 project) | Samples were then analyzed using a Heinz-Walz WATER-PAM fluorometer, with 0.2 µm filtered seawater used as a blank
| Heinz-Walz WATER-PAM fluorometer |
| Float park phase data collected at depth in the Sargasso Sea from 2013-2014. | Used for sampling
| WET Labs MCOMS Chlorophyll Fluorometer |
| Processed CTD data (binned) and station information for the PE21-18 Microbial DO respir cruise (15 total casts) aboard the R/V Pelican during April and May 2021 | | Wetlabs CDOM |
| Processed CTD data (unbinned) and station information for the PE21-18 Microbial DO respir cruise (15 total casts) aboard the R/V Pelican during April and May 2021 | | Wetlabs CDOM |
| Processed CTD data (binned) from 24 casts conducted on R/V Pelican cruise PE22-03 in the Northern Gulf of Mexico in August 2021 | | Wetlabs CDOM |
| Processed CTD data (binned) from 24 casts conducted on R/V Pelican cruise PE22-03 in the Northern Gulf of Mexico in August 2021 | | Chelsea Aquatracka 3 Chl-a |
| Processed CTD data from 24 casts conducted on R/V Pelican cruise PE22-03 in the Northern Gulf of Mexico in August 2021 | | Wetlabs CDOM |
| Processed CTD data from 24 casts conducted on R/V Pelican cruise PE22-03 in the Northern Gulf of Mexico in August 2021 | | Chelsea Aquatracka 3 Chl-a |
| Processed CTD data (binned) from 20 casts conducted on R/V Pelican cruise PE23-20 in the Northern Gulf of Mexico in May 2023 | | Wetlabs ECO Fluorometer |
| Processed CTD data (binned) from 20 casts conducted on R/V Pelican cruise PE23-20 in the Northern Gulf of Mexico in May 2023 | | Wetlabs CDOM |
| Processed CTD data from 20 casts conducted on R/V Pelican cruise PE23-20 in the Northern Gulf of Mexico in May 2023 | | Wetlabs ECO Fluorometer |
| Processed CTD data from 20 casts conducted on R/V Pelican cruise PE23-20 in the Northern Gulf of Mexico in May 2023 | | Wetlabs CDOM |
| Processed CTD data (averaged into 1-meter depth bins) from 26 casts conducted on R/V Pelican cruise PE24-03 in the Northern Gulf of Mexico in August 2023 | | Wetlabs ECO Fluorometer |
| Processed CTD data (averaged into 1-meter depth bins) from 26 casts conducted on R/V Pelican cruise PE24-03 in the Northern Gulf of Mexico in August 2023 | | Wetlabs CDOM |
| Processed CTD data from 27 casts conducted on R/V Pelican cruise PE24-03 in the Northern Gulf of Mexico in August 2023 | | Wetlabs ECO Fluorometer |
| Processed CTD data from 27 casts conducted on R/V Pelican cruise PE24-03 in the Northern Gulf of Mexico in August 2023 | | Wetlabs CDOM |
| Activities of extracellular peptidases at Station H of the White Oak River (WOR) Station H in 2013 (SEDpep project) | | Promega Quantifluor ST fluorescence detector |
| Photosynthesis and respiration data recorded during experiments conducted to examine two coral species' responses to thermal stress | | Pulse amplitude-modulated (PAM) fluorometer (MINI-PAM, WALZ) |
| Quantification of photosynthetic capacity of cells using a laser induction of chlorophyll autofluorescence | mini-FIRe (Fluorescence Induction and Relaxation System) custom built by M. Gorbunov, Rutgers University.
| mini-FIRe |
| Physiology of Montipora capitata and Porites compressa from October 2019 to September 2022 in response to marine heatwaves (2015 and 2019) in Hawaiʻi | photochemical yield (Fv/Fm): Diving-PAM (Walz GmbH)
| Diving-PAM (Walz GmbH) |
| Phytoplankton HPLC pigment concentrations from samples collected in the Gulf of Mexico on R/V Nancy Foster cruises in May 2017 and May 2018 | | Seapoint fluorometer |
| A Turner Trilogy Fluorometer was used to measure NH4+ concentration ≥ 50 µM.
| Turner Trilogy Fluorometer |
| Data on phytoplankton physiology and iron and temperature interactions collected in the Ross Sea during 2013 (Ross Sea Microb Ecophys project) | 10AU fluorometer (Turner Designs, CA)
| |
| Phytoplankton data from phyto and microzooplankton experiments from the RVIB Nathaniel B. Palmer NBP0601 cruise in the Ross Sea, Southern Ocean from 2005-2006 (CORSACS project, Antarctic microzooplankton project) | A Turner Designs fluorometer was used to determine chlorophyll a concentrations.
| Fluorometer |
| Pigments and Nutrients from ARSV Laurence M. Gould, RVIB Nathaniel B. Palmer LMG0402, NBP0606 in the Southern Drake Passage and Scotia Sea from 2004-2006 (BWZ project) | | Fluorometer |
| The eukaryotic (poly-A) metatranscriptome for Canterbury Basin from R/V JOIDES Resolution cruise JRES-317 in the Canterbury Basin from 2009-2010 | | Qubit 2.0, Life Technologies |
| HS- and NH4+ porewater data from Little Lagoon, Alabama collected from 2012-2013. | Used to collected water column and sediment chlorophyll-a content
| Fluorometer |
| Steady state photosynthesis (photosynthetic induction time) from Porites astreoides colonies in St. John, US Virgin Islands from July to August of 2019 | | Underwater Fluorometer Diving-PAM (Heinz Walz GmbH) |
| Pulse Amplitude Modulation (PAM) fluorometer measurements from Porites astreoides colonies in St. John, US Virgin Islands from July to August of 2019 | | Underwater Fluorometer Diving-PAM (Heinz Walz GmbH) |
| Primary production from the San Pedro Ocean Time-series (SPOT) measured between 2014 to 2016 | | profiling natural fluorometer |
| Float profile data collected during surface ascents in the Sargasso Sea from 2013-2014. | Used for sampling
| WET Labs MCOMS Chlorophyll Fluorometer |
| Profile data from WireWalker deployments at Mission Beach, California in 2016 at a 50m depth | | WET Labs fluorometer and ECO puck |
| Phytoplankton abundance and biomass data collected during the R/V Roger Revelle cruise (RR2202) in the Argo Basin of the Eastern Indian Ocean from Feb to Mar 2022 | We used a 12-place 6-L Niskin bottle rosette equipped with a Seabird Conductivity, Temperature, and Depth (CTD) sensor and profiling chlorophyll fluorometer to sample water daily at six depths spanning the euphotic zone for phytoplankton community samples.
| profiling chlorophyll fluorometer |
| Pseudo-nitzschia spp. cell counts, nutrients water temperature and salinity, and concentrations of the toxin domoic acid from weekly samples and offshore cruises with the Northeast U.S. Shelf (NES) Long-Term Ecological Research (LTER) | | Trilogy fluorometer (Turner Designs, Inc., San Jose, CA, USA) |
| Pyrosome gut pigment contents from samples collected off the Oregon Coast on two cruises aboard NOAA Ship Bell M. Shimada during 2018 | | Turner Designs Trilogy |
| Results from qPCR assays to quantify the abundance and photochemical performance of symbionts relative to coral cells in three coral species collected from colonies in southeast Florida in April and October 2019 before, during, and after heat stress tests | Photochemical efficiency was calculated using measurements from an imaging pulse amplitude modulated fluorometer (MAXI Version IMAGING-PAM M-Series, Walz, Effeltrich, Germany).
| imaging pulse amplitude modulated (PAM) fluorometer |
| Data resulting from testing dilution experiments conducted in the development of four assays to quantify copeod naupliar biomass in Kaneohe Bay, Hawaii | A Qubit Fluorometer (Invitrogen) with the HS Assay was used for measurement of total DNA.
| Qubit Fluorometer (Invitrogen) |
| Measurements of mixed field samples used for qPCR estimates and estimating biomass of DNA copy number in bulk samples | A Qubit Fluorometer (Invitrogen) with the HS Assay was used for measurement of total DNA.
| Qubit Fluorometer (Invitrogen) |
| Measurements of individual body size and qPCR estimates of DNA copy number per individual from the development of four assays to quantify copeod naupliar biomass in Kaneohe Bay, Hawaii | A Qubit Fluorometer (Invitrogen) with the HS Assay was used for measurement of total DNA.
| Qubit Fluorometer (Invitrogen) |
| Measurements of fluorescence of photosystem II in Plocamium cartilagineum under various and pCO2 and temperature conditions | Used to measure chlorophyll fluorescence
| Walz Underwater fluorometer - Diving-PAM, Heinz Walz, Effeltrich, Germany |
| Temperature, salinity, and fluorescence of seawater collected from Alamitos Bay, Long Beach, CA during 2017-2019 | | Aquafluor Handheld Fluorometer |
| Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on random coral colonies of Orbicella faveolata from Varadero and Rosario reefs, Colombia, May 2017 | An underwater Pulse Amplitude Modulated fluorometer (diving-PAM, Walz, Germany) was used to measure the PSII photochemical efficiency.
| diving-PAM, Walz, Germany |
| Photosystem II (PSII) photochemical efficiency (Yield PSII) recorded at noon (ΔF/Fm') and at dusk (Fv/Fm) on corals from the species Orbicella faveolata, transplanted from Varadero and Rosario reefs, Colombia, May 2017 | An underwater Pulse Amplitude Modulated fluorometer (diving-PAM, Walz, Germany) was used to measure the PSII photochemical efficiency.
| diving-PAM, Walz, Germany |
| Coral physiology data (Fv/Fm) on four collected coral species from six sites in the Red Sea from 2018 to 2020 | | Pulse amplitude-modulated (PAM) fluorometer (Diving PAM or Imaging PAM, WALZ) |
| RNA:DNA measurements for field-collected animals from the Gulf of Mexico Estuary near Port Aransas and Mud Island, Texas from 2020 to 2021 | Microplate fluorometer (Molecular Devices, model Gemini XPS). The microplate fluorometer is operated using SoftMax Pro version 5.4 also by Molecular Devices.
| Gemini XPS |
| RNA:DNA and total lipid measurements for laboratory-based experimental animals collected from the Gulf of Mexico Estuary near Port Aransas, Texas from 2020 to 2022 | | Microplate fluorometer (Molecular Devices, model Gemini XPS) |
| Link to NCBI BioProject on programmed cell death from RVIB Nathaniel B. Palmer NBP1302 in the Ross Sea from February to April 2013 (TRACERS project) | To measure fluorescence
| WET Labs |
| CTD bottle data for all CTD casts during R/V Roger Revelle RR1804, RR1805 cruises in the Eastern Tropical North Pacific Ocean, from March to April 2018 | Chlorophyll was measured by SeaPoint fluorometer.
| Sea Point fluorometer |
| Plankton cell abundances and APA data from RV Atlantic Explorer BATS cruise BV50 in the North Atlantic subtropical gyre during September 2015. | Used to measure fluorescence
| Horiba FluoroMax-4 spectrofluorometer |
| Bulk and cell-specific CO2 fixation and PO4 uptake from Atlantic Explorer cruise AE1524 (BATS validation cruise BV50), September 2015 | Used to measure fluorescence
| Horiba FluoroMax-4 spectrofluorometer |
| Abundance, size, fecundity of Salpa aspera in the Slope Waters off northeastern USA from R/V Oceanus OC379, OC381 in the slope waters off NJ, DE, MD from June-Sept. 2002 (SalpSwarmDyn project) | | Fluorometer |
| Cyanobacterial and diatom samples collecteced between April and September 2022, and sequenced for metabarcodig of 16S and rbcL. | | Qubit Fluorometer |
| Vascular plant and microbial biomarkers of dissolved organic matter from San Francisco Bay transects | Samples for CDOM absorbance were analyzed in a 1 cm cuvette on a Horiba Aqualog-UV-800-C (benchtop fluorometer). Fluorescence properties of FDOM were also determined using a Horiba Aqualog-UV-800-C.
| Horiba Aqualog-UV-800-C |
| Application of a rapid microbiome characterization pipeline to corals afflicted with Stony Coral Tissue Loss Disease in St. Thomas, US Virgin Islands. | Used to quantify PCR purified products
| Qubit 2.0 fluorometer |
| Seasonal data on productivity, characteristics, and community composition of tidepools on the California coast from 2017 to 2018 | | DIVING-PAM, Heinz Walz GMbH |
| Seawater nutrient/metabolite and flow cytometry metadata - Picoplankton incubation experiment 2020 | FDOM analysis: Horiba Aqualog scanning fluorometer with 150 W Xe excitation lamp, Peltier-cooled CCD emission detector, and a simultaneous absorbance spectrometer, Horiba Scientific, Piscataway, New Jersey, USA
| Horiba Aqualog scanning fluorometer with 150 W Xe excitation lamp |
| Flow through sediment core incubations for nitrogen concentration and isotopic fluxes collected in 2013 on the Island of Sylt, Germany in the North Sea. | | Turner Designs Aquafluor Fluorometer |
| Factory and field calibration data for float oxygen, beam transmission, backscatter, chlorophyll fluorescence and CDOM sensors from the Sargasso Sea from 2013-2014. | Used for sampling
| WET Labs MCOMS Chlorophyll Fluorometer |
| Series 1A: Two-stressor effects on Tp-1335: Experiments to investigate the combined effect of light and temperature changes on the growth rate of Thalassiosira pseudonana CCMP | Used to measure instantaneous chlorophyll fluorescence (F0) and quantum Yield (QY=Fv/Fm, where Fv is the maximal variable fluorescence and Fm is the maximal fluorescence intensity).
A 20-minute dark adaptation time was used.
AquaPen settings: f = 30, F=71, A = 50.
| Z985 Cuvette Aquapen (Qubit Systems) |
| Series 1B: Four follow-up experiments on the combined effect of light and temperature changes on the growth rate (mu) of Thalassiosira pseudonana CCMP 1335 conducted to supplement series 1A experiments | Used to measure instantaneous chlorophyll fluorescence (F0) and quantum Yield (QY=Fv/Fm, where Fv is the maximal variable fluorescence and Fm is the maximal fluorescence intensity).
A 20-minute dark adaptation time was used.
AquaPen settings: f = 30, F=71, A = 50.
| Z985 Cuvette Aquapen (Qubit Systems) |
| Series 1B-3: Multiple stressor experiments on T. pseudonana (CCMP1335) – computed data from the LC3 protocol for samples at 4 temperatures, 15-26C | Used for assessment of photochemistry.
| Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 1B-4: Multiple stressor experiments on T. pseudonana (CCMP1335) – Chlorophyll, particulate organic carbon and particulate organic nitrogen | Used for assessment of photochemistry.
| Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 1C: Supplemental experiments on Tp-1335: Determination of dark acclimatization time of the diatom Thalassiosira pseudonana | Used to measure instantaneous chlorophyll fluorescence (F0). AquaPen settings: f = 30, F=71, A = 50.
| Z985 Cuvette Aquapen (Qubit Systems) |
| Series 2A-2: Multiple stressor experiments on T. pseudonana (CCMP1014) – photophysiology | Used for assessment of photochemistry.
| Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 2A-3: Multiple stressor experiments on T. pseudonana (CCMP1014) – Chlorophyll, particulate organic carbon and particulate organic nitrogen | Used for analysis of chlorophyll a concentrations.
| Turner 700 fluorometer |
| Series 3A: Multiple stressor experiments on T. pseudonana (CCMP1014) - photophysiology measurements | Used for assessment of photochemistry.
| hand-held Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 3A: Multiple stressor experiments on T. pseudonana (CCMP1014) - Chlorophyll, particulate organic carbon and particulate organic nitrogen. | Used for fluorometric analyses of extracted chlorophyll.
| Turner 700 fluorometer |
| Series 3B: Supplemental experiments on Thalassiosira pseudonana (CCMP1014) cultures determining the optimal aquapen actinic light pulse (A-pulse) setting: computed values including min and max fluorescence | Used to measure fluorescence.
A hand-held cuvette version of the FluorPen fluorometer equipped with a blue and red LED emitter. Blue excitation light (455 nm) is intended for chlorophyll excitation, i.e., for measuring chlorophyll fluorescence in algal cultures. Red-orange excitation light (620 nm) is intended for excitation through phycobilins and is suitable for measuring in cyanobacteria.
| Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 3B: Supplemental experiments on T. pseudonana (CCMP1014) - growth under bubbling stress: A-pulse raw fluorescence data | Used to measure fluorescence.
A hand-held cuvette version of the FluorPen fluorometer equipped with a blue and red LED emitter. Blue excitation light (455 nm) is intended for chlorophyll excitation, i.e., for measuring chlorophyll fluorescence in algal cultures. Red-orange excitation light (620 nm) is intended for excitation through phycobilins and is suitable for measuring in cyanobacteria.
| Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 3B: Supplemental experiments on T. pseudonana (CCMP1014) - growth under bubbling stress: flow cytometry measurements | Used to measure fluorescence.
A hand-held cuvette version of the FluorPen fluorometer equipped with a blue and red LED emitter. Blue excitation light (455 nm) is intended for chlorophyll excitation, i.e., for measuring chlorophyll fluorescence in algal cultures. Red-orange excitation light (620 nm) is intended for excitation through phycobilins and is suitable for measuring in cyanobacteria.
| Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 3B: Supplemental experiments on T. pseudonana (CCMP1014) growth under bubbling stress: computed photochemical measurements using LC3 protocol for non-aerated samples and aerated samples | Used to measure fluorescence.
A hand-held cuvette version of the FluorPen fluorometer equipped with a blue and red LED emitter. Blue excitation light (455 nm) is intended for chlorophyll excitation, i.e., for measuring chlorophyll fluorescence in algal cultures. Red-orange excitation light (620 nm) is intended for excitation through phycobilins and is suitable for measuring in cyanobacteria.
| Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 3B: Supplemental experiments on T. pseudonana (CCMP1014) growth under bubbling stress: LC3 protocol raw fluorescence measurements for non-aerated samples and aerated samples | Used to measure fluorescence.
A hand-held cuvette version of the FluorPen fluorometer equipped with a blue and red LED emitter. Blue excitation light (455 nm) is intended for chlorophyll excitation, i.e., for measuring chlorophyll fluorescence in algal cultures. Red-orange excitation light (620 nm) is intended for excitation through phycobilins and is suitable for measuring in cyanobacteria.
| Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 3B: Supplemental experiments on T. pseudonana (CCMP1014) growth under bubbling stress: NPQ1 protocol (Non-Photochemical chlorophyll fluorescence Quenching) computed photochemical measurements | Used to measure fluorescence.
A hand-held cuvette version of the FluorPen fluorometer equipped with a blue and red LED emitter. Blue excitation light (455 nm) is intended for chlorophyll excitation, i.e., for measuring chlorophyll fluorescence in algal cultures. Red-orange excitation light (620 nm) is intended for excitation through phycobilins and is suitable for measuring in cyanobacteria.
| Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 3B: Supplemental experiments on T. pseudonana (CCMP1014) growth under bubbling stress: NPQ1 protocol (Non-Photochemical chlorophyll fluorescence Quenching) raw fluorescence measurements for non-aerated samples and aerated samples | Used to measure fluorescence.
A hand-held cuvette version of the FluorPen fluorometer equipped with a blue and red LED emitter. Blue excitation light (455 nm) is intended for chlorophyll excitation, i.e., for measuring chlorophyll fluorescence in algal cultures. Red-orange excitation light (620 nm) is intended for excitation through phycobilins and is suitable for measuring in cyanobacteria.
| Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 4A: Multiple stressor experiments on the cyanobacteria Synechococcus elongatus CCMP1629 - computed photophysiology parameters | For assessment of photochemistry.
| Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 4A: Multiple stressor experiments on the cyanobacteria Synechococcus elongatus CCMP1629 - raw fluorescence readings for photophysiology computations | For assessment of photochemistry.
| Aquapen-C AP-C 100 (Photon Systems Instruments) |
| Series 4A: Multiple stressor experiments on the cyanobacteria Synechococcus elongatus CCMP1629 - Chlorophyll, particulate organic carbon and particulate organic nitrogen. | Used for fluorometric analyses of extracted chlorophyll.
| Turner 700 fluorometer |
| Dissolved inorganic nitrogen, chlorophyll-a, and primary production from bioassay experiments during the R/V Hugh R. Sharp cruise HRS1414 in the Mid and South-Atlantic Bight in August of 2014 (DANCE project) | Spectrofluorophotometer: NH4
| Shimadzu RF1501 |
| Dissolved inorganic nitrogen, chlorophyll-a, and primary production from bioassay experiments during the R/V Hugh R. Sharp cruise HRS1414 in the Mid and South-Atlantic Bight in August of 2014 (DANCE project) | Fluorometer: Chl-a
| Turner Designs 10-AU fluorometer |
| Photochemical yield and color score data from short-term heat stress assays performed with with corals collected from sites around Heron Island, southern Great Barrier Reef in Sept and Oct of 2022 | photochemical yield (Fv/Fm): Diving-PAM (Walz GmbH)
| |
| Photochemical yield and bleaching severity data from a standardized short-term (18 hour) heat stress assay of Montipora capitata and Porites compressa collected at a patch reef in Kane'ohe Bay, O'ahu, Hawai'i in September of 2022 | Diving-PAM (Walz GmbH) is an Underwater Fluorometer with Miniature Spectrometer.
Pulse-amplitude modulated (PAM) fluorometry.
Photochemical yield (Fv/Fm).
| Diving-PAM (Walz GmbH) |
| CTD profiles from the Great Lakes, North America collected during various R/V Blue Heron cruises between 2009-2012 (SINC project) | Wetlabs Wetstar WSCD
| wetstar WSCD |
| CTD profiles from the Great Lakes, North America collected during various R/V Blue Heron cruises between 2009-2012 (SINC project) | Wetlabs Wetstar WS3S
| Wetstar WS3S |
| Microbial enzyme activities: polysaccharide hydrolase activities in bulk seawater samples from the RV\Sonne cruise SO248 in the South and North Pacific, along 180 W, May, 2016 | | |
| Microbial enzyme activities: glucosidase and peptidase activities of bulk seawater samples from the RV\Sonne cruise SO248 in the South and North Pacific, along 180 W, May, 2016 | | |
| Microbial enzyme activities: polysaccharide hydrolase activities of gravity filtered seawater samples from the RV\Sonne cruise SO248 in the South and North Pacific, along 180 W, May, 2016 | | |
| Microbial enzyme activities: glucosidase and peptidase activities of gravity filtered seawater samples from the RV\Sonne cruise SO248 in the South and North Pacific, along 180 W, May, 2016 | | |
| Oceanographic data from 12 monthly cruises off the Israeli coast in the east Mediterranean conducted between Feb 2018 and Jan 2019 at a continental shelf station (~140m depth) and an open-deep water station. | JASCO fluorometer
| JASCO fluorometer |
| 16S gene sequencing of microbial communities in South China Sea sediments from January to March 2014 | PCR products were quantified using a Qubit fluorometer and pooled prior to sequencing.
| Qubit fluorometer |
| Accession numbers for raw sequence reads; samples collected on R/V Roger Revelle cruise KNOX02RR in the South Pacific Gyre from 2006-2007 (Microbial Diversity SPG project) | Samples were then quantified using the Qubit 1.0 fluorometer and the Qubit dsDNA HS Assay Kit (Life Technologies).
| Qubit 1.0 |
| Retinoid data from SPOT cruises during different months (2016-2017) | | Turner 10AU fluorometer |
| Quantum yield of photosystem II (Fv/Fm) from an experiment examining the effect of Sr on the coccolithophore Scyphosphaera apsteinii calcification | Fv/Fm is a measure of photosynthetic efficiency by measuring the quantum efficiency of photosystem II; a tool for assessing cell health. An AquaPen AP 100 fluorometer (PSI, Drasov, Czech Republic) was used to assess Fv/Fm.
| AquaPen AP 100 fluorometer (PSI, Drasov, Czech Republic) |
| Effect of phytosterol supplementation on Acartia egg production (PhytosterolsZooplank project) | Used to measure chlorophyll-a.
| Turner hand-held fluorometer |
| Effect of phytosterol supplementation on Artemia growth (PhytosterolsZooplank project) | Used to measure chlorophyll-a.
| Turner hand-held fluorometer |
| Metadata for transcriptomic expression data from cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002 grown in defined culture media with either glucose, acetate, or a mix of both as carbon substrates | | Qubit Fluorometer |
| Fv/Fm for cultured Clade A & B Symbiodinium with 2 treatments measured over a range of temperatures | Used to measure fluorescence. Settings: default settings of the manufacturer with the following changes: Gain: 800; # of samples: 4; STF: 60 μs. See Exc profile,the reference excitation profile used by FIReView to normalize the variable fluorescence profile.
See also: http://www.seabird.com/FIRe-System
| Fluorescence Induction and Relaxation (FIRe) Fluorometer system and fibre optic probe (Satlantic, Halifax, Nova Scotia, Canada) |
| Traits of five Symbiodinium genotypes measured at three different nitrogen levels | Used to measure chlorophyll concentrations.
| Trilogy Laboratory Fluorometer |
| Traits of five Symbiodinium genotypes measured at three different nitrogen levels | Used to measure quantum yield and fluorescence yield.
| AquaPen-C (Photon Systems Instruments) |
| Traits of three Symbiodinium genotypes measured at ambient and elevated temperatures | | Trilogy Laboratory Fluorometer |
| Symbiodinium cell density, chlorophyll, respiration, photosynthetic yield in Seriatopora coral, Taiwan, 2010 (MCR LTER project, Climate_Coral_Larvae project) | Diving-PAM (Waltz, GmbH, Effeltrich, Germany)
| Fluorometer |
| Seriatopora bleaching expt: Photosynthesis:irradiance (P/I) curves, Taiwan 2010 (MCR LTER project, Climate_Coral_Larvae project) | Diving-PAM (Waltz, GmbH, Effeltrich, Germany)
| Fluorometer |
| Seriatopora bleaching expt: temperature, salinity, light in tanks, Taiwan 2010 (MCR LTER project, Climate_Coral_Larvae project) | Diving-PAM (Waltz, GmbH, Effeltrich, Germany)
| Fluorometer |
| Seriatopora bleaching expt: water pH and carbonate chemistry, Taiwan 2010 (MCR LTER project, Climate_Coral_Larvae project) | Diving-PAM (Waltz, GmbH, Effeltrich, Germany)
| Fluorometer |
| Continuous culture studies of Synechococcus elongatus CCMP1629 in nitrate-limited and nutrient-replete cultures plus DNA results | Used to measure instantaneous chlorophyll fluorescence (F0). AquaPen settings: f = 30, F=71, A = 50.
| Z985 Cuvette Aquapen (Qubit Systems) |
| Continuous culture studies of Synechococcus elongatus CCMP1629 in nitrate-limited and nutrient-replete cultures plus DNA results | Used to measure the maximum quantum yield, QY (Fv/Fm) with the manufacturer’s supplied plastic cuvettes containing 4 mL of culture each.
| PSI AquaPen C100 |
| Laboratory-cultured Synechococcus (WH8102 and WH5701) growth (vivo fluorescence) on dissolved organic phosphorus (DOP) from experiments between 2018-2023 | | AquaFluor® Handheld Fluorometer and Turbidimeter (Turner Designs) |
| Diatom (Thalassiosira pseudonana) physiological data from experiments designed to study single-cell transcriptional profiling of nutrient acquisition heterogeneity in diatoms conducted in December of 2022 | | AquaPen AP100, Photon Systems Instruments (Drásov, Czechia) |
| Continuous culture studies of possible climate change effects: Thalassiosira pseudonana CCMP1335 growth in nitrate-limited and nutrient-replete cultures | Used to measure instantaneous chlorophyll fluorescence (F0). AquaPen settings: f = 30, F=71, A = 50.
| Z985 Cuvette Aquapen (Qubit Systems) |
| Continuous culture studies of possible climate change effects: Thalassiosira pseudonana CCMP1335 growth in nitrate-limited and nutrient-replete cultures | Used to measure the maximum quantum yield, QY (Fv/Fm) with the manufacturer’s supplied plastic cuvettes containing 4 mL of culture each.
| PSI AquaPen C100 |
| Experimental results of nitrate-limited or nitrate-replete continuous culture studies of Thalassiosira pseudonana at 5 temperatures with either high or low pCO2 and irradiance | Used to measure the maximum quantum yield, QY (Fv/Fm) with the manufacturer’s supplied plastic cuvettes containing 4 mL of culture each.
| PSI AquaPen C100 |
| Bioproject accession information on tag-sequence data for Pisaster ochraceus samples collected from Bodega Bay, CA, in July 2019 | The RNA product was resuspended in 25 µl H2O and stored at -80°C following quantification with a Qubit® 2.0 Fluorometer and corresponding RNA High Sensitivity (HS) Assay Kit (ThermoFisher Scientific, Waltham, MA, USA).
| Qubit® 2.0 Fluorometer |
| Alongtrack data from RV/Tioga cruise TI668, full water-column to the Wilkinson Basin, Gulf of Maine, May 2013 (Gulf of Maine Pteropods project, GoME OA Pteropods project) | | Fluorometer |
| Alongtrack data from RV/Tioga cruise TI700 to the Gulf of Maine, August 2013 (Gulf of Maine Pteropods project) | | Fluorometer |
| Alongtrack data from RV/Tioga cruise TI715 to the Gulf of Maine, October 2013 (Gulf of Maine Pteropods project) | | Fluorometer |
| Alongtrack data from R/V Tioga TI725 in the Gulf of Maine from January 2014 (Gulf of Maine Pteropods project) | | Fluorometer |
| Alongtrack data from R/V Tioga TI729 in the Gulf of Maine from January 2014 (Gulf of Maine Pteropods project) | | Fluorometer |
| Alongtrack data from RV/Tioga cruise TI746 to the Gulf of Maine, April 2014 (Gulf of Maine Pteropods project) | | Fluorometer |
| Flow cytometry and nutrient analyses data from a tidal study over 48 hours of mangrove, seagrass, and seawater from the US Virgin Islands in July of 2017 | | Qubit 2.0 fluorometer (ThermoFisher Scientific) |
| CTD-associated variables, bottle salinity measurements, oxygen titrations, nutrient analyses, biogeochemical/biological variables, and DIC chemistry variables from R/V Thomas G. Thompson cruise TN376 from January to March 2020 | The Water PAM (Walz, Germany) is a portable cuvette system for analyzing the photosynthetic activity of a wide variety of phytoplankton samples.
| Water PAM |
| CTD-associated variables, bottle salinity measurements, oxygen titrations, nutrient analyses, biogeochemical/biological variables, and DIC chemistry variables from R/V Thomas G. Thompson cruise TN376 from January to March 2020 | The FluorCam Imaging Pulse Amplitude Modulation system (Photon Systems Instruments Cz) is a Fluorescence Kinetic Microscope (FKM) that extends the complete capacity of kinetic chlorophyll or multicolor fluorescence imaging to the realm of individual cells and subcellular structures.
| FluorCam Imaging Pulse Amplitude Modulation system |
| Coastal water biogeochemistry collected aboard the R/V Endeavor along the North Atlantic coast from 2017-08-20 to 2017-08-28 | Briefly, samples were extracted in 90% acetone in the dark (4C, 9 hr) and measured using an 10AU fluorometer (Turner).
| 10AU fluorometer (Turner) |
| Trace Metals from ARSV Laurence M. Gould LMG0402 in the Antarctica, Drake Passage, Scotia Sea, Bransfield Strait from February to March 2004 (BWZ project) | Wet labs FL1 fluorometer
| Wet labs FL1 fluorometer |
| Trace Metals from RVIB Nathaniel B. Palmer NBP0606 in the Antarctica, Drake Passage, Scotia Sea, Bransfield Strait from July to August 2006 (BWZ project) | Wet labs FL1 fluorometer
| Wet labs FL1 fluorometer |
| Trace-metals from CTD casts and underway water samples collected during the R/V Hugh R. Sharp cruise HRS1414 in the Mid and South-Atlantic Bight in August of 2014 (DANCE project) | Spectrofluorophotometer: NH4
| Shimadzu RF1501 (Spectrofluorophotometer) |
| Trace-metals from CTD casts and underway water samples collected during the R/V Hugh R. Sharp cruise HRS1414 in the Mid and South-Atlantic Bight in August of 2014 (DANCE project) | Fluorometer: in-situ chlorophyll fluorescence
| Turner AU10 fluorometer |
| Trace-metals from CTD casts and underway water samples collected during the R/V Hugh R. Sharp cruise HRS1414 in the Mid and South-Atlantic Bight in August of 2014 (DANCE project) | WET Labs ECO-FL(RT)D deep chlorophyll fluorometer, calibrated by SeaBird Electronics: in-situ chlorophyll fluorescence
| : WET Labs ECO-FL(RT)D deep chlorophyll fluorometer |
| Nutrient transfer experiments with host coral and symbionts under varying environmental conditions conducted March 2014 and March 2015 | A pulse amplitude modulation fluorometer (Diving PAM, Waltz, Germany) was used to measure the maximum quantum yield of photosystem II (PSII, Fv/Fm) one hour after sunset in three separate locations using a 0.6 second saturation pulse
| Walz Diving-PAM pulse amplitude modulation fluorometer |
| CTD data collected during CGOA Trawl cruises from R/V Pandalus PA0101, PA0102, PA0103, PA0104, PA0201, PA0202, PA0203, PA0301, PA0302, PA0303, PA0401, PA0402, PA0403 in the Northeast Pacific from 2001-2004 (NEP project) | Wetlabs
| Fluorometer |
| Underway Data Acquisition System (UDAS) data from R/V Point Sur cruise PS1312 along the Central California coast from June to July of 2013 (Diatom Group Si Prod project) | | Fluorometer Wetlabs ECO Chla |
| Rapid light curves of Ulva australis based on PAM fluorometry under OA and eutrophication (Seaweed OA Resilience project) | Used to measure chlorophyll fluorescence
| Walz Underwater fluorometer - Diving-PAM, Heinz Walz, Effeltrich, Germany |
| Surface water characteristics measured while underway from R/V Ka'imikai-O-Kanaloa KOK1115near Kona, Hawaii from December 2011 (C-MORE project) | CMORE : BAG underway data was collected using a SeaBird SBE-21 Seacat thermosalinograph system and a Seapoint fluorometer. They were screened for errors and processed to 1-minute averages.
| Seapoint fluorometer |
| Underway Data (SAS) from R/V Roger Revelle KNOX22RR in the Patagonian Shelf (SW South Atlantic) from 2008-2009 (COPAS08 project) | WETLabs wetstar fluorometer
Product Brochure
| Fluorometer |
| Underway Data from R/V Melville, R/V Roger Revelle cruises MV1101, RR1202 in the Southern Ocean (30-60S); 2011-2012 (Great Calcite Belt project) | WETLabs wetstar fluorometer
Product Brochure
| Fluorometer |
| Underway MET data collected on the GLOBEC LTOP cruise NH0307A aboard R/V New Horizon in the Northeast Pacific in 2003 | Wetlabs WetStar fluorometer located in Aft lab (Range 0.03 to 75 ug/L). Fluorometer connected to one of the 4 channels built into the SBE-21.
| Fluorometer |
| Seawater microbial communities within coral reef seawater change over six years in response to disturbance | | AquaFluor fluorometer at 664 nm (Turner Designs handheld 800446) fitted with a red sensitive photomultiplier |
| Partial SSU rRNA genes of bacteria and archaea from reef seawater samples produced using 515F/806R and 515F/806RB primers from the Bermuda, Red Sea, and Federated States of Micronesia in 2013 (Coral Microbial Relationships project) | Qubit 2.0 Fluorometer with the dsDNA High Sensitivity Assay (Life Technologies, Grand Island, NY USA)
| |
| Bacteria, picoeukaryote, and Synecoccus cell counts and chlorophyll-a from nitrate and vitamin-B treatments, from up-welled coastal waters off Southern California, March 2015 (B-vitamin plankton succession project) | | |
| Water column data collected during Dataflow cruises in the lower York River Estuary, VA during and following two successive harmful algal blooms | The pCO2-DataFlow system is instrumented with a pCO2 analyzer, a multi-parameter datasonde (YSI 6600V2), Wet Labs CDOM sensor, Garmin global positioning system (GPS MAP 546S), and data acquisition system.
| Wet Labs CDOM sensor |
| Fluorescence data (C3) collected by the AUV Honey Badger (Wave Glider) in the North Pacific gyre in 2015 (MAGI project) | Turner float-mounted C3 fluorometers equipped for chl, phycoerythrin and CDOM.
For more details see:
http://www.turnerdesigns.com/products/submersible-fluorometer/c3-submersible-fluorometer
| fluorometer |
| Fluorescence data (phytoflash) collected by the AUV Honey Badger (Wave Glider) in the North Pacific gyre in 2015 (MAGI project) | Turner Designs' PhytoFlash is an active fluorometer that measures quantum efficiency of photosynthesis.
Fore more details see the PhytoFlash page: http://www.turnerdesigns.com/submersible?page=shop.product_details&flypage=flypage_default.tpl&category_id=1&product_id=4
| phytoflash |
| Surface Fluorescence from C3 fluorometer on G5 WaveGlider from fishing vessels in the Southern California Bight off Huntington Beach in 2012 (SoCalPlumeEx2012 project) | Data collected on a G5 WaveGlider. Data are essentially raw, no processing other than calibration applied. Turner Designs C3 fluorometer equipped to measure chlorophyll fluorescence (460 nm ex/696 nm em; reported in fluorescence units), turbidity (850 nm ex./850 em.; units= NTU; Nephelometric Turbidity Units), and colored dissolved organic material (CDOM ; 325 nm ex/410-600 nm em.). Sensors were calibrated by Liquid Robotics (chl fluorescence = 1.0119 mg ml-1 Basic Blue 3; turbidity= 3000 NTU turbidity standard) as per Turner Designs recommendation.
| Turner Designs C3 fluorometer |
| CTD measurements from WaveGlider from fishing vessels in the Southern California Bight off Huntington Beach in 2012 (SoCalPlumeEx2012 project) | Data collected from an underway mapping system using a YSI 6600v2 sonde (CTD) and Turner Designs PhytoFlash variable fluorescence meter. Data merged with GPS locations and binned to 1 minute intervals. The PhytoFlash data were blank-corrected with 0.2 µm filtered seawater but were not corrected for ambient irradiance.
| Turner Designs PhytoFlash variable fluorescence meter |
| Whole community (3 domain) metatranscriptomes for subsurface sediment core samples from R/V JOIDES Resolution cruises JRES-201 and JRES-317 in the Peru Margin and Canterbury Basin in 2002 and 2009-10 | | Qubit 2.0, Life Technologies |
| Whole genome sequence data for Pisaster ochranceus samples collected from the Pacific coast of North America from July 2004 to May 2018 | DNA concentration was quantified using Qubit fluorometry (Invitrogen, Waltham, MA, USA).
| Qubit fluorometer |
| Sample collection information and sequence accessions at the National Center for Biotechnology Information (NCBI) for whole genome sequencing of eelgrass (Zostera marina) collected at Bodega and Tomales Bay, CA, USA from July to September 2019 | | Qubit fluorometer |
| Physical and optical measurements from Wirewalker profiling moorings WW_M19, WW_WQM2, and WW_ESP in the Continental shelf offshore of Huntington Beach, California in 2012 (SoCalPlumeEx2012 project) | Turner Designs Cyclops 7 chlorophyll fluorometer
| Turner Designs Cyclops 7 chlorophyll fluorometer |
| Physical and optical measurements from Wirewalker profiling moorings WW_M19, WW_WQM2, and WW_ESP in the Continental shelf offshore of Huntington Beach, California in 2012 (SoCalPlumeEx2012 project) | Turner Designs C3 fluorometer
| Turner Designs C3 fluorometer |
| Distance-weighted data flow averages interpolated over 24-hours for the York River estuary in 2018 and 2019 | Wet Labs FLCD-SB CDOM sensor
| Wet Labs CDOM sensor |
| Distance-weighted data flow averages for the York River estuary in 2018 and 2019 | Wet Labs FLCD-SB CDOM sensor
| Wet Labs CDOM sensor |
| YSI flowthrough data from fishing vessels in the Southern California Bight off Huntington Beach in 2012 (SoCalPlumeEx2012 project) | Data collected on a G5 WaveGlider. Data are essentially raw, no processing other than calibration applied. Turner Designs C3 fluorometer equipped to measure chlorophyll fluorescence (460 nm ex/696 nm em; reported in fluorescence units), turbidity (850 nm ex./850 em.; units= NTU; Nephelometric Turbidity Units), and colored dissolved organic material (CDOM ; 325 nm ex/410-600 nm em.). Sensors were calibrated by Liquid Robotics (chl fluorescence = 1.0119 mg ml-1 Basic Blue 3; turbidity= 3000 NTU turbidity standard) as per Turner Designs recommendation.
| Turner Designs C3 fluorometer |
| [Deprecated] Laboratory growth, photosynthetic, and respiration rates of Thalassiosira pseudonana clone 3H in nitrate limited culture (Stressors on Marine Phytoplankton project) | Used to measure instantaneous chlorophyll fluorescence (F0). AquaPen settings: f = 30, F=71, A = 50.
| Z985 Cuvette Aquapen (Qubit Systems) |
| [Deprecated] Laboratory growth, photosynthetic, and respiration rates of Thalassiosira pseudonana clone 3H in nitrate limited culture (Stressors on Marine Phytoplankton project) | Used to measure the maximum quantum yield, QY (Fv/Fm) with the manufacturer’s supplied plastic cuvettes containing 4 mL of culture each.
| PSI AquaPen C100 |
| [Deprecated] Laboratory growth, photosynthetic, and growth rates of Thalassiosira pseudonana clone 3H in nitrate replete culture (Stressors on Marine Phytoplankton project) | Used to measure instantaneous chlorophyll fluorescence (F0). AquaPen settings: f = 30, F=71, A = 50.
| Z985 Cuvette Aquapen (Qubit Systems) |
| [Deprecated] Laboratory growth, photosynthetic, and growth rates of Thalassiosira pseudonana clone 3H in nitrate replete culture (Stressors on Marine Phytoplankton project) | Used to measure the maximum quantum yield, QY (Fv/Fm) with the manufacturer’s supplied plastic cuvettes containing 4 mL of culture each.
| PSI AquaPen C100 |
©2020 Biological and Chemical Oceanography Data Management Office.