©2020 Biological and Chemical Oceanography Data Management Office.Funded by the U.S. National Science Foundation
©2020 Biological and Chemical Oceanography Data Management Office.| Dataset Name | PI-Supplied Description | PI-Supplied Name |
|---|---|---|
| Fatty acid concentration extracted from A. pisonii eggs from three habitats along the Florida eastern coast, 2016 | Agilent 6890 GC 5975 Mass Spectrometer | |
| Amino acid compound specific nitrogen isotopic analysis (AA-CSIA) data from reef fish samples collected over a 4 year period from 2008 to 2012 from the Hawaiian Islands | The d15N values of derivatized samples were determined using a Delta V Plus mass spectrometer interfaced to a Trace GC gas chromatograph through a GC-C III combustion furnace. | mass spectrometer |
| Peptides associated with scaffold-derived metaproteomic proteins from samples taken during R/V Atlantic Explorer cruise AE1913 from the Sargasso Sea to Northeast US shelf waters in June of 2019 | Thermo Fusion mass spectrometer | |
| Protein identification FASTA file (scaffold-derived metaproteomic proteins) from samples taken during R/V Atlantic Explorer cruise AE1913 from the Sargasso Sea to Northeast US shelf waters in June of 2019 | Thermo Fusion mass spectrometer | |
| Scaffold-derived metaproteomic exclusive and total spectral counts associated with proteins from samples taken during R/V Atlantic Explorer cruise AE1913 from the Sargasso Sea to Northeast US shelf waters in June of 2019 | Thermo Fusion mass spectrometer | |
| The global proteome of replete laboratory cultures of Alteromonas macleodii MIT1002 | Data were collected with a Thermo Fusion Orbitrap mass spectrometer interfaced with a Dionex nano-HPLC configured with 2D active modulation chromatography using the methods of McIlvin and Saito 2021. | Thermo Fusion Orbitrap |
| Bulk and AA d15N values for ala, glu, and phe from phytoplantkon and grazers grown in lab chemostats | For experiments 1-4, we used a Delta V Plus mass spectrometer interfaced with a Trace GC gas chromatograph through a GC-C III combustion furnace (980C), reduction furnace (650C), and liquid nitrogen cold trap as described in Hannides et al. (2009). For experiments 5-6 we used a Delta V Plus mass spectrometer (Thermo Scientific) interfaced through a Conflo IV to a GC 1310 gas chromatograph coupled to a GC Isolink combustion-reduction furnace (1000C) and liquid nitrogen cold trap. | Delta V Plus |
| Amino acid enantiomeric ratios (D/L) of high and low molecular weight (HMW, LMW) DOM collected from the North Pacific Subtropical Gyre and Central North Atlantic | GC-MS; Agilent 7890A + 5975B | |
| Nitrogen fixation rates from samples collected in the Chukchi Sea, Arctic Ocean near Barrow, Alaska in August of 2011 (ArcticNITRO project) | Isotopic measurements for 15N fixation rates were analyzed on a Europa GEO 20/20 mass spectrometer with an ANCA-SL autosampler. | Europa GEO 20/20 |
| Geochemical concentrations (ppm) of six elements measured in Atlantic croaker otoliths | Analytical instrumentation included an Agilent 7500ce ICP-Q-MS coupled with a UP-193 FX laser ablation system | Agilent 7500ce ICP-Q-MS |
| Siderophore concentrations found in supernatants of Azotobacter vinelandii str. OP, Azotobacter chroococcum str. B3, and Azotobacter chroococcum str. NCIMB 8003 from laboratory experiments in 2015 | Agilent 6120 LC-MS (Agilent, Santa Clara, CA, USA) | |
| Experimental data (d15N and d13C) from a starvation experiment with scleractinian cold-water coral Balanophyllia elegans collected at Friday Harbor, WA with experiments conducted between 2020 and 2022 | Costech Elemental Analyzer Isotope Ratio Mass Spectrometer | |
| Helium isotope and neon data from seawater samples collected June 2018 during FS Alkor cruise AL510 in the Baltic Sea | Helium analysis was performed on a VG-5400 (Micromass) noble gas mass spectrometer. The Micromass VG-5400 instrument is a sector field mass spectrometer designed for measurement of all noble gases (He, Ne, Ar, Kr, Xe) and their isotopes. | VG-5400 noble gas mass spectrometer |
| SF6 and helium data from a tracer release experiment conducted June 2018 in the coastal Baltic Sea during FS Alkor cruise AL510 | In the laboratory, 3He samples were extracted from the copper tubes and measured on a VG-5400 He isotope mass spectrometer. | VG-5400 noble gas mass spectrometer |
| Cytosolic metallome data of the metalloproteome of Pseudoalteromonas sp. strain BB2-AT2 cultures originally collected from Scripps Pier, California coast in 1995 | Samples were analyzed by an LC-MS on a Q-Exactive (Thermo Scientific) using a Michrom Paradigm MG4 liquid chromatography system. | LC-MS on a Q-Exactive (Thermo Scientific) |
| Metalloproteome protein data of the metalloproteome of Pseudoalteromonas sp. strain BB2-AT2 cultures originally collected from Scripps Pier, California coast in 1995 | Samples were analyzed by an LC-MS on a Q-Exactive (Thermo Scientific) using a Michrom Paradigm MG4 liquid chromatography system. | LC-MS on a Q-Exactive (Thermo Scientific) |
| Boron and Calcium geochemistry of mussel larvae bulk material, 2014-2015 (OA_Proxies project) | Cameca IMS 3F located at the Secondary Ion Mass Spectrometry Labs at Arizona State University | Mass Spec |
| Mass spec headers for Boron and Calcium geochemistry of mussel larvae bulk material, 2014-2015 (OA_Proxies project) | Cameca IMS 3F located at the Secondary Ion Mass Spectrometry Labs at Arizona State University | Mass Spec |
| Boron isotopes and trace elements experimental data of tropical corals | Trace elements were measured on an Element XR at the IUEM (Plouzané, France), method is detailed in Guillermic et al., in prep (Biogeosciences). | Element XR |
| Bulk and CSIA-AA stable isotopes in sinking POM (sediment trap collected) and proteinaceous deep-sea coral skeletal material in Monterey Bay from 1998 to 2007 | Bulk isotope analysis was performed at the UC Santa Cruz Light Stable Isotope Laboratory using a Carlo Erba 1108 elemental analyzer coupled to Thermo Finnigan Delta Plux XP isotope ratio mass spectrometer following standard procedures (https://websites.pmc.ucsc.edu/~silab/index.php). | Thermo Finnigan Delta Plux XP |
| Carbon chemistry (TCO2, TALK, POC, PON, dC13_POM, dN15_POM) from CTD bottles from RVIB Nathaniel B. Palmer cruise NBP1302 in the Ross Sea, Antarctica from February to March 2013 (TRACERS project) | Carlo Erba NA1500 Series 2 elemental analyzer coupled to a Finnigan Delta+ mass spectrometer with a ConFloII open split interface. | Finnigan Delta+ mass spectrometer |
| Carbonate chemistry and isotopes from multiple M/V OOCL Tianjin and M/V OOCL Tokyo cruises between Hong Kong and Long Beach in the Pacific Basin from 2008-2012 (NPac Cont Ship project) | To measure del13C-DIC | Finnigan MAT 251 |
| Record of d2H of dinosterol variability in down core lake sediments from Clear Lake, Palau | Dinosterol was isolated from the sterol fraction via reverse phase (RP)- high performance liquid chromatography (HPLC). An Agilent 1100 HPLC with an integrated autoinjector, quaternary pump, and fraction collector was coupled to an Agilent 1100 LC/MSD SL mass spectrometer with a multimode source that was operated in positive atmospheric pressure chemical ionization (APCI+) mode. | Agilent 1100 LC/MSD SL mass spectrometer |
| Results of cluster analysis and gene ontology: carbonate Organic Matrix (COM) proteins from coral, mollusk, and sea urchin; analyzed in the Falkowski lab at Rutgers from 2010-2014 (CROA project) | Mass Spec | |
| Results of cluster analysis and gene ontology: cross-phyla clustering of non-redundant carbonate organic matrix proteins from coral, mollusk, and sea urchin grouped by hierarchical clustering; analyzed in the Falkowski lab at Rutgers from 2010-2014 | Mass Spec | |
| Laboratory results: Raw mass spectrometer data from a diatom (Thalassiosira pseudonana) grown under CO2-replete and CO2-stressed conditions; conducted in the Kustka lab at Rutgers from 2007-2013 | The LTQ-Orbitrap-Velos Pro high resolution mass spectrometer possesses different ion fragmentation capabilities including CID, ETD, and HCD. The instrument is useful for applications that require special fragmentation mechanisms, high resolution (100,000 ppm), high sensitivity, and/or rapid duty cycle. See a description from the Biological Mass Spectrometry Facility of the UMDNJ-Robert Wood Johnson Medical School: http://cabm-ms.cabm.rutgers.edu/instruments.html | Rapid Separation nano LC system (RSLC) interfaced with a LTQ Orbitrap Velos |
| Coccolith dissolution experiment for the study: Gut dissolution of coccoliths by Acartia/effect on pellet sinking. | Jobin Yvon Ultima C inductively coupled plasma-atomic emission spectrometer (ICP-AES, HORIBA, Ltd., Kyoto, Japan) | |
| Concentrations of Ne, Ar, Kr and Xe as measured by the gas equilibrator mass spectrometer (GEMS) in the SUSTAIN wind-wave tank in the summer of 2018 | Hiden Hal 3F Quadrupole Mass Spectrometer | |
| Concentrations of Ne, Ar, Kr and Xe as measured by the gas equilibrator mass spectrometer (GEMS) in the SUSTAIN wind-wave tank in the summer of 2018 | Pfeiffer Prismaplus for O2/Ar | Pfeiffer Prismaplus |
| Coral energy reserve data from Puerto Morelos, Mexico including calcification, chlorophyll a, stable isotopes, and health metrics | Costech Elemental Analyzer coupled to a Thermo-Finnigan Delta IV stable isotope mass spectrometer the Grottoli laboratory at Ohio State University. | Thermo-Finnigan Delta IV stable isotope mass spectrometer |
| Internal carbonic anhydrase activity in three species of coral collected from the Florida Keys in August 2013 | 18O-exchange was measured using a Pfeiffer QMS220M2 mass spectrometer. | Pfeiffer QMS220M2 |
| Isotopic ratios d18O and d13C from coral mini core samples collected on Kiritimati in the Northern Line Islands in April of 2016 (RAPID Kiritimati project) | ThermoFisher Delta V Plus mass spectrometer with Kiel prep device. | ThermoFisher Delta V Plus |
| CSIA-AA comparison between live polyps and outer proteinaceous skeletal material in three taxons of North Pacific deep-sea corals | For bulk isotopes: Carlo Erba 1108 elemental analyzer interfaced to a Thermo Finnegan Delta Plus XP isotope ratio mass spectrometer. | Thermo Finnegan Delta Plus XP |
| Net primary production and nutrient data from R/V Hugh R. Sharp cruise HRS1414 CTD casts in the Mid and South-Atlantic Bight from July to August of 2014 (DANCE project) | NPP: Europa 20/20 isotope ratio mass spectrometer equipped with an automated nitrogen and carbon analysis for gas, solids, and liquids (ANCA-GSL) preparation module. | Europa 20/20 isotope ratio mass spectrometer |
| Whole-cell data dependent mass spectrometry proteomic approach examining Emiliania Huxleyi exposed to 3 doses of HHQ | Thermo Scientific Orbitrap Fusion Lumos Tribrid mass spectrometer | |
| Whole-cell data independent mass spectrometry proteomic approach to examining Emiliania Huxleyi exposed to 4 treatments of HHQ | Thermo Scientific Orbitrap Fusion Lumos Tribrid mass spectrometer | |
| Globobulimina delta 13C and 18O isotopes from sediment cores collected on R/V Endeavor EN524 on the continental shelf off New England, May 2013 (OA, Hypoxia and Warming project) | NOSAMS VG Prism-II SIRMS | |
| Sample and treatment information from mass spectrometry assays of metabolite experiments on Thalassiosira pseudonanna 1335 inoculated with three bacterial strains | Mass spectrometry samples were analyzed on a Vanquish UHPLC system (Thermo Fisher Scientific) coupled via heated electrospray ionization (H-ESI) to an ultrahigh resolution tribrid mass spectrometer, the Orbitrap Fusion Lumos (Thermo Fisher Scientific). | Orbitrap Fusion Lumos (Thermo Fisher Scientific) |
| Diatom metabolites under P-limited and P-replete growth from laboratory cultures in July of 2013 | For targeted analysis, samples were analyzed with a Thermo Scientific TSQ Vantage Triple Stage Quadrupole Mass Spectrometer. For untargeted analysis, samples were analyzed in both negative and positive ion mode with liquid chromatography (LC) coupled by electrospray ionization to a 7-Tesla Fourier-transform ion cyclotron resonance mass spectrometer (FT-ICR MS). | |
| Diel proteomes of cultured Trichodesmium erythraeum sp. IMS101 from laboratory experiments conducted in November of 2018 | Thermo Orbitrap Fusion mass spectrometer | |
| Dinitrogen fixation (N2fix) rates and nifH community structure from in situ 15N2 Gas Array from R/V Kilo Moana KM1016, KM1110 in the North Pacific Subtropical Gyre near Station ALOHA from 2010-2011 (DIAZOTROPHS-CO2 project) | Mass Spectrometer | |
| Discrete O2 Argon (Ar) from NOAA Ship Ronald H. Brown cruise RB-08-02 in the Southwest Atlantic sector of the Southern Ocean near South Georgia Island in 2008 (SO_GasEx project) | Approximately half the samples are analyzed using a Finnigan DeltaPlus XP mass spectrometer for measurement of O2/N2/Ar as well as d18O of O2 and d15N of N2 | Finnigan DeltaPlus XP mass spectrometer |
| Discrete O2 Argon (Ar) from NOAA Ship Ronald H. Brown cruise RB-08-02 in the Southwest Atlantic sector of the Southern Ocean near South Georgia Island in 2008 (SO_GasEx project) | Others are chromatographed to separate O2 and Ar from N2, followed by analysis of O2/Ar and the triple isotope composition of O2 using a Finnigan MAT 252 mass spectrometer. | Finnigan MAT 252 mass spectrometer |
| Concentrations of He, Ne, Ar, Kr and Xe collected in copper tube samples in the SUSTAIN wind-wave tank in the summer of 2018 | A mass spectrometric system using a Hiden PIC quadrupole (P/N PCI 1000 1.2HAL/3F 1301-9 PIC type 570309), equipped with an electron impact ion source, triple quadrupole mass filter, and a pulse counting secondary electron multiplier (SEM) for measurement of a suite of noble gases. This system was referred to informally as "MSThree" during the study. | Hiden PIC quadrupole |
| Dissolved Fe stable isotope ratios and concentrations collected from the RRS Discovery (D357) and RRS James Cook (JC068) from the North Atlantic in 2010-2011 | Neptune multi-collector ICP-MS | |
| Depth profiles of dissolved O2 saturation and isotopologues from the R/V Yellowfin and R/V Kilo Moana from 2016-09-14 to 2017-08-28 | Isotopologue analyses were performed on a custom Nu Instruments Perspective IS high-resolution isotope ratio mass spectrometer at Rice University. | mass spectrometer |
| Concentrations of dissolved organic carbon and phenols from Polarstern cruise PS 94-ARK-XXIX/3 from August to October 2015 | liquid chromatography/electrospray ionization-tandem mass spectrometry | |
| Seawater dissolved 232Thorium, 230Thorium and 231Protactinium from R/V Knorr KN193-06 and KN195-08 in the eastern N. Pacific and Sargasso Sea from 2008-2009 (GEOTRACES IC project) | VG Elemental AXIOM Single Collector Magnetic Sector ICP-MS with a Resolving Power of ~400 | Mass Spectrometer |
| Depth profiles of seawater dissolved 232Th, 230Th, and 231Pa, NW Pacific from R/V Sonne SO202 in the North Pacific and the Bering Sea from July 2009 (Sources-Sinks Th-Pa project) | VG Elemental AXIOM Single Collector Magnetic Sector ICP-MS with a Resolving Power of ~400 to ensure the highest sensitivity | Mass Spectrometer |
| Diurnal Gross Oxygen Production (GOP) from NOAA Ship Ronald H. Brown cruise RB-08-02 in the Southwest Atlantic sector of the Southern Ocean near South Georgia Island in 2008 (SO_GasEx project) | Quadrupole mass spectrometer is Michael Bender's second instrument, a Pfeiffer Vacuum Prisma. | Quadrupole mass spectrometer - A Pfeiffer Vacuum Prisma |
| Domoic acid assimilation in copepods from experiments conducted using water samples collected in northern Gulf of Mexico in 2019 | Acquity UPLC system (Waters, Milford, MA) coupled to a 5500 QTRAP triple quadrupole / linear ion trap mass spectrometer equipped with a TurboIonSpray interface (Sciex, Foster City, CA, USA). | Acquity UPLC system coupled to a 5500 QTRAP |
| Solid phase chemistry from gravity cores taken during R/V Atlantis cruise AT26-24 at the Dorado Outcrop near Cocos Ridge in December of 2014 (Dorado Outcrop project) | DeltaPlus XL mass spectrometer | |
| Solid phase chemistry from push cores taken during R/V Atlantis cruise AT26-24 at the Dorado Outcrop near Cocos Ridge in December of 2014 (Dorado Outcrop project) | DeltaPlus XL mass spectrometer | |
| Summary of pCO2, temperature, calcification rate, d18 sw, d13C sw; d18Oe, d13Ce, d18Oe-sw, and d13Ce-sw for individual echinoid specimens. | ThermoFinnigan GasBench II with an in-line Finnigan MAT 253 isotope ratio mass spectrometer | |
| Sampling and accession information for extracellular reef seawater metabolites collected from the Jardines de la Reina reef-system, Cuba in November of 2017 | Mass spectrometry samples were analyzed on a Vanquish UHPLC system (Thermo Fisher Scientific) coupled via heated electrospray ionization (H-ESI) to an ultrahigh resolution tribrid mass spectrometer, the Orbitrap Fusion Lumos (Thermo Fisher Scientific). | Orbitrap Fusion Lumos (Thermo Fisher Scientific) |
| Sampling and accession information for extracellular reef seawater metabolites collected from the Jardines de la Reina reef-system, Cuba in November of 2017 | Extracts prepared for targeted metabolomics were analyzed using UPLC (Accela Open Autosampler and Accela 1250 Pump, Thermo Scientific) coupled to a heated electrospray ionization source (H-ESI) and a triple stage quadrupole mass spectrometer (TSQ Vantage, Thermo Fisher Scientific), operated in selective reaction monitoring (SRM) mode. | Thermo Scientific TSQ Vantage Triple Stage Quadrupole Mass Spectrometer |
| Domoic acid assimilation in copepods by consuming organic polymers and Pseudo-nitzschia from experiments conducted using water samples collected in northern Gulf of Mexico in 2017 and 2018. | Acquity UPLC system (Waters, Milford, MA) coupled to a 5500 QTRAP triple quadrupole / linear ion trap mass spectrometer equipped with a TurboIonSpray interface (Sciex, Foster City, CA, USA). | Acquity UPLC system coupled to a 5500 QTRAP |
| Field physiochemical parameters including nutrient concentrations and nitrogen specific uptake rates from samples collected between 2017 and 2019 from the Arctic Ocean, California Coastal Current, and a Chesapeake Bay estuary | Used to measure isotope ratios and particulate masses | Sercon Integra2 Mass Spectrometer |
| B:Ca and Mg:Ca isotopes in foraminifera from sediment cores from R/V JOIDES Resolution JRES-198 in the Shatsky Rise, Pacific from 2001-2001 (OA_Paleocene-Eocene project) | Dual Inlet gas source mass spectrometer systems located at the University of California Santa Cruz – Stable Isotope Laboratory. | Mass Spec |
| A compilation of dissolved noble gas and N2/Ar ratio measurements collected from 1999-2016 in locations spanning the globe | quadrupole mass spectrometer | |
| Concentrations of dissolved argon, krypton, and xenon from Niskin bottle samples collected on Leg 1 (Seattle, WA to Hilo, HI) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1814) on R/V Roger Revelle from Sept-Oct 2018 | The helium isotope mass spectrometer is a custom-built unit manufactured at the Woods Hole Oceanographic Institution. | |
| Concentrations of dissolved argon, krypton, and xenon from Niskin bottle samples collected on Leg 2 (Hilo, HI to Papeete, French Polynesia) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1815) on R/V Roger Revelle from Oct-Nov 2018 | The helium isotope mass spectrometer is a custom-built unit manufactured at the Woods Hole Oceanographic Institution. | |
| Iron ligand concentration in particles (1-51 μm) analyzed by liquid chromatography-mass spectrometry from samples collected on the US GEOTRACES Pacific Meridional Transect (PMT) cruise RR1814 (GP15) on R/V Roger Revelle in October 2018 | Thermo Orbitrap Fusion mass spectrometer | |
| Iron ligand speciation profiles analyzed by liquid chromatography-mass spectrometry from samples collected on the US GEOTRACES Pacific Meridional Transect (PMT) cruises (GP15, RR1814 & RR1815) on R/V Roger Revelle from September to November 2018 | Thermo Orbitrap Fusion | |
| The 13C/12C stable carbon isotopic ratio of the dissolved inorganic carbon from samples collected on the GEOTRACES EPZT cruise (R/V Thomas G. Thompson TN303) in the Eastern Tropical South Pacific from October to December 2013 | The del13C is measured on a Thermo Delta Plus XL mass spectrometer. | Thermo Delta Plus XL mass spectrometer |
| Helium Isotopes and Noble Gas Concentrations from the 2013 Eastern Pacific Zonal Transect cruise on R/V Thomas G. Thompson (TN303) (US GEOTRACES EPZT project) | ||
| Size-fractionated major and minor particle composition and concentration collected from RV Thompson (TN303) along the US GEOTRACES EPZT transect in the Eastern Tropical Pacific during 2013 (US GEOTRACES EPZT project) | Inductively Coupled Mass Spectrometetry (HR-ICP-MS) | Element-XR ICP-MS (Thermo Scientific) |
| Trace element concentrations in suspended particles collected from the GeoFISH during the R/V Thomas G. Thompson cruise TN303 from Peru to Tahiti in 2013 (U.S. GEOTRACES EPZT project) | Finnigan MAT (Element2, by Bigelow lab) High Resolution Inductively Coupled Plasma Mass Spectrometer. Finnigan MAT (Element1, by Rutgers University) High Resolution Inductively Coupled Plasma Mass Spectrometer. | Finnigan-MAT Element* HR-ICP-MS |
| Trace elements in suspended particles from GO-Flo bottles | Finnigan MAT (Element2, by Bigelow lab) High Resolution Inductively Coupled Plasma Mass Spectrometer. Finnigan MAT (Element1, by Rutgers University) High Resolution Inductively Coupled Plasma Mass Spectrometer. | Finnigan-MAT Element* HR-ICP-MS |
| Particulate Po-210 and Pb-210 data from US GEOTRACES East Pacific Zonal Transect from R/V Thomas G. Thompson TN303, from Peru to Tahiti, October to December 2013 (U.S. GEOTRACES EPZT project) | Used to measure 209Po and 210Po activity | Alpha Analyst Integrated Alpha Spectrometer (Canberra Inc.) |
| Spectral data from high pressure liquid chromatography coupled to mass spectrometry from R/V Thomas G. Thompson cruise TN303 in the Eastern Tropical Pacific from October to December 2013 | Thermo-scientific iCap-Q mass spectrometer | |
| Spectral data from high pressure liquid chromatography coupled to mass spectrometry from R/V Thomas G. Thompson cruise TN303 in the Eastern Tropical Pacific from October to December 2013 | Thermo-scientific Orbitrap Fusion masss spectrometer | |
| Tritium Concentrations from the 2013 Eastern Pacific Zonal Transect cruise on R/V Thomas G. Thompson (TN303) (US GEOTRACES EPZT project) | mass spectrometer | |
| Helium and Neon duplicates from station 1 of R/V Knorr cruise KN199-04 (GT10) in the Subtropical northern Atlantic Ocean in 2010 (U.S. GEOTRACES NAT project) | The mass spectrometer used for measurement was known as 'MS1'. This is a custom-built instrument located at the Isotope Geochemistry Facility (IGF) at Woods Hole Oceanographic Institution (WHOI). The MS1 is a 10-inch radius, 90-degree magnetic sector instrument dedicated to the measurement of tritium, helium, and neon in seawater and groundwater samples. For a full description, see http://www.whoi.edu/sbl/liteSite.do?litesiteid=28952&articleId=47708 | Mass Spectrometer |
| Total dissolved copper, estimates of free Cu2+, ligand concentrations, and conditional stability constants from R/V Knorr KN199-04, KN204-01, subtropical North Atlantic Ocean from 2010-2011 (U.S. GEOTRACES NAT project) | The Element 2 ICP-MS manufactured by Thermo Scientific was used to measure [D-Cu]. http://www.thermoscientific.com/ecomm/servlet/productsdetail_11152___11961723_-1 | Mass Spectrometer |
| Depth profiles of dissolved, small and large particulate 232Th, 230Th, and 231Pa from R/V Knorr KN199-04, KN204-01, subtropical North Atlantic Ocean from 2010-2011 (U.S. GEOTRACES NAT project) | For the Dissolved Th & Pa data: Thermo-Finnigan Neptune mass spectrometer For the Particulate Th & Pa data: Thermo Scientific Element XR Inductively-couple plasma mass spectrometer (ICP-MS) | Mass Spectrometer |
| Dissolved Fe, Zn and Cd concentrations and isotope ratios from R/V Knorr KN199-04, KN204-01 in the subtropical North Atlantic Ocean from 2010-2011 (U.S. GEOTRACES NAT project) | Neptune multi-collector ICP-MS | Mass Spectrometer |
| Helium, Neon, and Helium-isotope concentrations from R/V Knorr cruises KN199-04 (GT10) and KN204-01 (GT11) in the Subtropical northern Atlantic Ocean from 2010-2011 (U.S. GEOTRACES NAT project) | The mass spectrometer used for measurement was known as 'MS1'. This is a custom-built instrument located at the Isotope Geochemistry Facility (IGF) at Woods Hole Oceanographic Institution (WHOI). The MS1 is a 10-inch radius, 90-degree magnetic sector instrument dedicated to the measurement of tritium, helium, and neon in seawater and groundwater samples. For a full description, see http://www.whoi.edu/sbl/liteSite.do?litesiteid=28952&articleId=47708 | Mass Spectrometer |
| Seawater Nd isotopes and concentrations from the US-GEOTRACES North Atlantic zonal transect (NAZT), 2010 and 2011 on cruises KN199-04 and KN204-01, analyzed at LDEO | Neodymium was measured as NdO+ on a VG TIMS Sector ( at UH) and VG TIMS Sector54 ( at LDEO). At USC, the Nd isotope composition was measured on a Thermo Neptune Plus MC-ICPMS. | Mass Spectrometer |
| Seawater Nd isotopes and concentrations from the US-GEOTRACES North Atlantic zonal transect (NAZT), 2010 and 2011 on cruises KN199-04 and KN204-01, analyzed by UHawaii | Neodymium was measured as NdO+ on a VG TIMS Sector ( at UH) and VG TIMS Sector54 ( at LDEO). At USC, the Nd isotope composition was measured on a Thermo Neptune Plus MC-ICPMS. | Mass Spectrometer |
| Seawater Nd isotopes and concentrations from the US-GEOTRACES North Atlantic zonal transect (NAZT), 2010 and 2011 on cruises KN199-04 and KN204-01, analyzed by USC | Neodymium was measured as NdO+ on a VG TIMS Sector ( at UH) and VG TIMS Sector54 ( at LDEO). At USC, the Nd isotope composition was measured on a Thermo Neptune Plus MC-ICPMS. | Mass Spectrometer |
| Depth profiles of suspended dissolved and particulate 232Th, 230Th, and 231Pa from R/V Knorr KN199-04, KN204-01, subtropical North Atlantic Ocean from 2010-2011 (U.S. GEOTRACES NAT project) | Thermo Scientific Element XR Inductively-couple plasma mass spectrometer (ICP-MS) | Mass Spectrometer |
| Trace element concentrations in particles from R/V Knorr KN199-04, KN204-01 in the subtropical North Atlantic Ocean from 2010-2011 (U.S. GEOTRACES NAT project) | Mass Spectrometer | |
| Trace element profiles from GT-10 and GT-11 from R/V Knorr KN199-04, KN204-01 in the subtropical North Atlantic Ocean from 2010-2011 (U.S. GEOTRACES NAT project) | XR High Resolution Magnetic SectorICP-MS | Mass Spectrometer |
| SAFe and GEOTRACES trace element references from R/V Knorr KN199-04, KN204-01 in the Subtropical northern Atlantic Ocean from 2010-2011 (U.S. GEOTRACES NAT project) | Mass Spectrometer | |
| Tritium concentration from R/V Knorr cruises KN199-04 (GT10) and KN204-01 (GT11) in the Subtropical northern Atlantic Ocean from 2010-2011 (U.S. GEOTRACES NAT project) | The mass spectrometer used for measurement was known as 'MS1'. This is a custom-built instrument located at the Isotope Geochemistry Facility (IGF) at Woods Hole Oceanographic Institution (WHOI). The MS1 is a 10-inch radius, 90-degree magnetic sector instrument dedicated to the measurement of tritium, helium, and neon in seawater and groundwater samples. For a full description, see http://www.whoi.edu/sbl/liteSite.do?litesiteid=28952&articleId=47708 | Mass Spectrometer |
| Porewater methane concentrations from sediment cores collected on the Guaymas Basin Ridge flanks and the Sonora Margin in 2014 from R/V El Puma in October 2014 | Methane isotopic composition was measured by gas chromatography coupled with mass spectrometry (Chanton and Liptay 2014). | mass spectrometry |
| Water column nitrate+nitrite d15N and d18O from samples collected during R/V Pelican and R/V F.G. Walton Smith cruises in the Gulf of Mexico and Florida Straits between 2011 and 2018 | Nitrate+nitrite d15N was measured using a Thermo Finnigan Delta V isotope ratio mass spectrometer. | Thermo Finnigan Delta V isotope ratio mass spectrometer |
| Particulate organic matter and isotope data from R/V Nancy Foster cruises NF1704 and NF1802 in the Gulf of Mexico in May of 2017 and 2018. | Elementar Vario EL Cube or Micro Cube elemental analyzer (Elementar Analysensysteme GmbH, Hanau, Germany) interfaced to either an Isoprime VisION IRMS (Elementar UK Ltd, Cheadle, UK) or a PDZ Europa 20-20 isotope ratio mass spectrometer (Sercon Ltd., Cheshire, UK). | |
| Retinoid data from Niskin bottle samples from B/O Sarmiento de Gamboa cruise Hotmix2014 in the Mediterranean in 2014 (Marine Retinoids project) | For analysis, samples were extracted with methanol (retinal, chla, and Bchl) and with hydroxylamine (oxime) and analyzed by liquid chromatography/tandem mass spectrometry (LC/MS/MS). The LCMS system consists of a ThermoTSQ Quantum Access electro-spray ionization triple quadrupole mass spectrometer, coupled to a Thermo Accela High Speed Liquid Chromatography system. | ThermoTSQ Quantum Access |
| Porewater hydrocarbon concentrations in Alvin pushcore samples from Guaymas Basin hydrothermal vents, RV/Atlantis cruise AT42-05, Nov. 2018 | ||
| Sediment hydrocarbon concentrations in Alvin pushcore samples from Guaymas Basin hydrothermal vents, RV/Atlantis cruise AT42-05, Nov. 2018 | ||
| Stable isotopic composition of aragonite from cultured coral (O. arbuscula) grown at 25 degrees C and other measured variables. | Thermo Scientific MAT 253 gas-source mass spectrometers based at Caltech and UCLA | |
| Vascular plant and microbial biomarkers of dissolved organic matter data from incubation experiments | Lignin phenol monomers were measured as trimethylsilane derivatives using an Agilent 6890N GC/5975 MS. | Agilent 6890N GC/5975 MS |
| Proteins identified from the black smoker chimney Inferno hydrothermal vent plume meta-proteome - replicate Av1 - on the Axial seamount off the coast of Washington in 2011. | "The hybrid Fourier Transform (FT) mass spectrometer(MS) combines a linear ion trap MS and the Orbitrap mass analyzer. Ions generated by API are collected in the LTQ XL followed by axial ejection to the C-shaped storage trap which is used to store and collisionally cool ions before injection into the orbital trap. The ions transferred from the C-Trap are captured in the orbital trap by rapidly increasing the electric field and the detection of the image current from coherent ion packets takes place after the voltages have stabilized. Signals from each of the orbital trap outer electrodes are amplified and transformed into a frequency spectrum by fast Fourier transformation which is finally converted into a mass spectrum." (From Fisher Scientific) | Thermo Fisher (San Jose, Ca) linear ion trap –Orbitrap (LTQ-OT) hybrid tandem mass spectrometer |
| Proteins from Inferno hydrothermal vent plume meta-proteome - replicate Av2 | "The hybrid Fourier Transform (FT) mass spectrometer(MS) combines a linear ion trap MS and the Orbitrap mass analyzer. Ions generated by API are collected in the LTQ XL followed by axial ejection to the C-shaped storage trap which is used to store and collisionally cool ions before injection into the orbital trap. The ions transferred from the C-Trap are captured in the orbital trap by rapidly increasing the electric field and the detection of the image current from coherent ion packets takes place after the voltages have stabilized. Signals from each of the orbital trap outer electrodes are amplified and transformed into a frequency spectrum by fast Fourier transformation which is finally converted into a mass spectrum." (From Fisher Scientific) | Thermo Fisher (San Jose, Ca) linear ion trap –Orbitrap (LTQ-OT) hybrid tandem mass spectrometer |
| Results from lab number 5 from an LCMS inter-lab study of marine dissolved organic matter and algal extracts from analyses in May of 2021 that used both San Diego, CA seawater and laboratory cultures | The samples were analyzed on a Orbitrap Fusion Lumos. The instrument parameters were as follows: Stationary phase: Waters Acquity HSS T3 column with 2.1 mm x 100 mm. Particle size: 1.8µm Mobile phase: LC-MS grade water (A), acetonitrile (B) with 0.1% formic acid (FA) each. Gradient: Start at 5% B, increase to 50% B at 7 min, increase to 99% B at 10 min, 3 min washout phase at 99% B, 4 min equilibration phase at 5% B (method length = 17 min). Flow rate: 0.4 mL/min with a 5 ul injection. | Orbitrap Fusion Lumos |
| Intracellular metabolites from an experimental manipulation of marine microorganisms from samples collected during R/V Knorr cruise KN210-04 in May of 2013 | For targeted metabolomics analysis, the samples were analyzed with a Synergi 4µ Fusion – RP 80A 150 x 2.00 mm column (Phenomenex, Torrance, CA) coupled to a Thermo Scientific TSQ Vantage Triple Stage Quadrupole Mass Spectrometer. For untargeted metabolomics analysis, LC separation was performed using a Synergi Fusion reversed phase column (Phenomenex, Torrance, CA) with the same gradient as for targeted analysis. | |
| Phytoplankton diversity along with carbon and nitrogen uptake rates collected along the GO-SHIP IO9 repeat hydrography section of the Indian Ocean from R/V Roger Revelle cruise RR1604 from March to April 2016 | Biomass and isotopic enrichment, used to calculate specific and absolute uptake rates, were assessed on a Thermo Finnegan Delta V mass spectrometer, as operated by the Bigelow Analytical Services team. | Thermo Finnegan Delta V mass spectrometer |
| Supplementary Table 3A: Concentration of archaeal and bacterial lipid biomarkers, ratio of core vs intact polar lipids and average chain length of bacterial dietherglycerol lipids. | All membrane lipid analyses were performed at MARUM (Bremen, Germany) with an ultra-high-pressure liquid chromatography (UHPLC) coupled to mass spectrometry (MS) on a Dionex Ultimate 3000RS UHPLC connected to an ABSciEX QTRAP4500 Triple Quadrupole/Ion Trap MS (UHPLC-Triple Quad-MS) via a Turbolon electrospray ion source (ESI). | |
| Relative abundances of the diether lipid archaeol and tetraether lipids with zero, one, two and three rings and crenarchaeol from rock samples at different depths. | ll membrane lipid analyses were performed at MARUM (Bremen, Germany) with an ultra-high-pressure liquid chromatography (UHPLC) coupled to mass spectrometry (MS) on a Dionex Ultimate 3000RS UHPLC connected to an ABSciEX QTRAP4500 Triple Quadrupole/Ion Trap MS (UHPLC-Triple Quad-MS) via a Turbolon electrospray ion source (ESI). | ABSciEX QTRAP4500 Triple Quadrupole/Ion Trap MS (UHPLC-Triple Quad-MS) |
| Diversity of archaeal intact polar lipids (IPLs) and changes in relative abundance of bacterial dietherglycerol lipids (DEGs) within the selected 11 samples at different depths | ll membrane lipid analyses were performed at MARUM (Bremen, Germany) with an ultra-high-pressure liquid chromatography (UHPLC) coupled to mass spectrometry (MS) on a Dionex Ultimate 3000RS UHPLC connected to an ABSciEX QTRAP4500 Triple Quadrupole/Ion Trap MS (UHPLC-Triple Quad-MS) via a Turbolon electrospray ion source (ESI). | ABSciEX QTRAP4500 Triple Quadrupole/Ion Trap MS (UHPLC-Triple Quad-MS) |
| Archaeal core lipids, intact polar lipids (IPLs), and bacterial dietherglycerol (DEG) lipids in the drilling mud, subsampled from whole round core 29R3 and selected rock samples. | ll membrane lipid analyses were performed at MARUM (Bremen, Germany) with an ultra-high-pressure liquid chromatography (UHPLC) coupled to mass spectrometry (MS) on a Dionex Ultimate 3000RS UHPLC connected to an ABSciEX QTRAP4500 Triple Quadrupole/Ion Trap MS (UHPLC-Triple Quad-MS) via a Turbolon electrospray ion source (ESI). | ABSciEX QTRAP4500 Triple Quadrupole/Ion Trap MS (UHPLC-Triple Quad-MS) |
| Isotopes in methane in natural waters of Alaska | After methane concentration analysis, the remaining headspace gas samples were split into two 10-mL exetainers for δ13C-CH4 and δD-CH4 analysis. δD-CH4 was analyzed at the UC Davis Stable Isotope Facility on a ThermoScientific PreCon concentration system interfaced to a ThermoScientific Delta V Plus isotope ratio mass spectrometer (ThermoScientific, Bremen, DE). δ13C-CH4 was analyzed at the Lawrence Livermore National Laboratory using the standard TraceGas preconcentration system interfaced with an IsoPrime isotope ratio mass spectrometer (IsoPrime Ltd, UK) as described by Fisher et al. (2006). The mass requirements for δ13C-CH4 and for δD-CH4 analyses was 10 nmoles and 2 nmoles respectively. | ThermoScientific Delta V Plus isotope ratio mass spectrometer |
| Isotopes in methane in natural waters of Alaska | After methane concentration analysis, the remaining headspace gas samples were split into two 10-mL exetainers for δ13C-CH4 and δD-CH4 analysis. δD-CH4 was analyzed at the UC Davis Stable Isotope Facility on a ThermoScientific PreCon concentration system interfaced to a ThermoScientific Delta V Plus isotope ratio mass spectrometer (ThermoScientific, Bremen, DE). δ13C-CH4 was analyzed at the Lawrence Livermore National Laboratory using the standard TraceGas preconcentration system interfaced with an IsoPrime isotope ratio mass spectrometer (IsoPrime Ltd, UK) as described by Fisher et al. (2006). The mass requirements for δ13C-CH4 and for δD-CH4 analyses was 10 nmoles and 2 nmoles respectively. | IsoPrime isotope ratio mass spectrometer |
| SSU rRNA gene sequences from marine sediments, marine subseafloor, and deep seawater sampled from the Juan de Fuca Ridge Flank from various R/V Atlantis cruises from 2008-2011 (microJdFR project) | Whole sediment samples were analyzed for concentration and isotopic composition of total carbon, organic carbon, and total nitrogen using an elemental combustion system (Costech ECS 4010) connected inline to an isotope-ratio mass spectrometer (Thermo Finnigan Delta XP). | Thermo Finnigan Delta XP |
| Elemental ratio data from LA ICP-MS analysis of oyster larvae exposed to various temperature, salinity, and elemental concentration treatments conducted in December of 2013 (EstuarineMetaDyn project) | Both larval and spat samples were analyzed using a Thermo-Fisher Element2 inductively coupled plasma mass spectrometer with a Teledyne ATLex 300si-x 193nm Excimer laser ablation unit (LA ICP-MS). To correct for mass bias and instrument drift, National Institute of Technology Standards-certified standards (Reference Material 612, 614, and 616) were run at the beginning and end of every 4 slide sequence (~140 burns). | Thermo-Fisher Element2 inductively coupled plasma mass spectrometer |
| Results of light-limited growth experiments including the full range of volatile organic compounds (VOCs) produced by the diatom T. weissflogii and alga D. tertiolecta during laboratory experiments conduced in Sept of 2023 | Proton transfer reaction time-of-flight mass spectroscopy (PTR-TOF/MS; Ionicon, Austria). | |
| Macroalgal carbon and nitrogen data collected as part of macroalgal surveys in Sitka Sound, Alaska kelp beds from 2018 to 2020 | CE Instruments NC2500 elemental analyzer coupled to a Thermo Scientific DELTAplus XP isotope ratio mass spectrometer via a Thermo-Scientific Conflo III (routine measurement error ≤ 1.0 %C and ≤ 0.2 %N). | Thermo Scientific DELTAplus XP |
| Results of proteomic analysis on diatom response to allelopathy from red tide dinoflagellate (Karenia brevis) | QEplus | |
| MS-based lipidomics on diatom response to allelopathic chemicals from the red tide dinoflagellate (Karenia brevis) | Waters Xevo G2 QTOF mass spectrometer | |
| MS-based polar metabolomics on diatom response to allelopathic chemicals from red tide dinoflagellate (Karenia brevis) | A Xevo G2 QTOF Mass Spectrometer was used. | Xevo G2 QTOF Mass Spectrometer |
| Mass spectrometry proteomics data investigating morphological plasticity in a sulfur-oxidizing bacterium from the SUP05 clade enhances dark carbon fixation from cultures grown under under aerobic and anaerobic conditions | Waters ACQUITY M-class UPLC coupled to a Thermo QExactive HF Orbitrap high-resolution mass spectrometer (HRMS) equipped with a nano-electrospray (NSI) source | |
| Metal quotas of NE Pacific and Altantic diatom isolates measured via ICP-MS after growth in zinc and cobalt media amendments in experiments with cultures collected from R/V Thomas G. Thompson cruise TN280, along Line P in the NE Pacific, in May of 2012 | Thermo ICAP-Q plasma mass spectrometer | |
| Metaproteomics of Bering Strait Ship-board 10 day bacterial Incubations. | nanoAcquity UPLC (Waters Corp, Milford MA) connected to a Q-Exactive-HF (Thermo-Fisher Scientific, Waltham MA) | |
| Ice core Be7 concentrations from the MOSAIC expedition on the R/V Polarstern in the Central Arctic Ocean from October 2019 to May 2020 | Perkin Elmer Optima 7300 DV ICP-OES | |
| Snow and frost flower Be7 concentrations from the MOSAIC expedition on the R/V Polarstern in the Central Arctic Ocean from October 2019 to May 2020 | Perkin Elmer Optima 7300 DV ICP-OES | |
| Raw LCMS data files from study of metabolomics of blue crab urine inducing fear in prey | ||
| Elemental analysis of mussel larvae bulk material collected at Louisiana State Univeristy in 2014 (OA Proxies project) | Cameca IMS 3F located at the Secondary Ion Mass Spectrometry Labs at Arizona State University | Mass Spec |
| Laboratory results on mussel larvae mass spec headers collected at Louisiana State Univeristy in 2014 (OA Proxies project) | Cameca IMS 3F located at the Secondary Ion Mass Spectrometry Labs at Arizona State University | Mass Spec |
| Elemental fingerprints of larval, juvenile, and settler Mytilus collected in the Gulf of Maine between 2015 and 2017 | Teledyne Cetac 213 G2+ laser coupled with a Perkin Elmer NexION 2000C mass spectrometer with autosampler and cross-flow nebulizer. | Perkin Elmer NexION 2000C |
| Vertical profiles of N2 gas concentrations in excess of equilibrium values along with the isotopic composition of total N2, NO3- and NO2- from R/V New Horizon cruise NH1410 in the Eastern Tropical North Pacific from May to June 2014 | N2 excess were determined from N2/Ar ratios measured using the procedures described by Charoenpong et al. (2014) with the exception that the measurements were made at sea using a Pfieffer 400 series quadrupole mass spectrometer system. | Pfieffer 400 series quadrupole mass spectrometer |
| Dissolved trace metal concentrations for Incubation 1, initiated September 11th, 2016 on RVIB Nathaniel B. Palmer cruise NBP16-08 in the Southern Ocean | Element XR Inductively Coupled Plasma Mass Spectrophotometer | |
| Dissolved trace metal concentrations for Incubation 2, initiated September 24th, 2016 on RVIB Nathaniel B. Palmer cruise NBP16-08 in the Southern Ocean | Element XR Inductively Coupled Plasma Mass Spectrophotometer | |
| Dissolved trace metal concentrations for Incubation 3, initiated September 27th, 2016 on RVIB Nathaniel B. Palmer cruise NBP16-08 in the Southern Ocean | Element XR Inductively Coupled Plasma Mass Spectrophotometer | |
| Dissolved trace metal concentrations from depth profiles during RVIB Nathaniel B. Palmer cruise NBP16-08 in the Southern Ocean from 2016-09-11 to 2016-10-10 | Element XR Inductively Coupled Plasma Mass Spectrophotometer | |
| 15NO3 uptake measured during experimental cycles in 24-hour in situ incubations on R/V Melville cruise MV1008 in the Costa Rica Dome in 2010 (CRD FLUZiE project) | Samples were analyzed by mass spec at the SIO Analytical Facility. | Mass Spec |
| Global proteome analyses of the nitrite-oxidizing bacterium Nitrospira marina grown under atmospheric and low oxygen concentrations | Thermo Fusion mass spectrometer with a Thermo Flex ion source | |
| Targeted proteome analyses of the nitrite-oxidizing bacterium Nitrospira marina grown under atmospheric and low oxygen concentrations | Thermo Fusion mass spectrometer | |
| Noble gas global observations used in the ECCO noble gas model and simulations decomposed to isolate bubble-mediated gas exchange (Noble gas modeling project) | Used by Stanley et al (2009) to measure noble gasses. | Hiden Quadrupole Mass Spectrometer (QMS) |
| Nutrient concentrations and stable isotope values for groundwater in nearshore shelf waters off Charleston, SC from June 2018 to August 2019 | Thermo Finnigan DeltamV isotope ratio mass spectrometer | |
| Nutrients, targeted proteomics, and pigments from the METZYME cruise (KM1128) | Absolute quantitation of proteins was conducted by triple quadrupole mass spectrometry using a Thermo Vantage mass spectrometer. Chromatographic separation and mass spectrometry were performed using a Paradigm MS4 HPLC (Michrom Bioresources) coupled to a Thermo Vantage TSQ mass spectrometer (Thermo Scientific). | Thermo Vantage mass spectrometer |
| Particulate nutrients from phyto and microzooplankton experiments from the RVIB Nathaniel B. Palmer NBP0601 cruise in the Ross Sea, Southern Ocean from 2005-2006 (CORSACS project, Antarctic microzooplankton project) | A Finnigan Delta Plus mass spectrometer was used for analysis. | Mass Spec |
| Phosphorus and biogenic silica from phytoplankton and microzooplankton experiments on the RVIB Nathaniel B. Palmer NBP0608 cruise in the Ross Sea, Southern Ocean during 2006(CORSACS project, Antarctic microzooplankton project) | A Finnigan Delta Plus mass spectrometer was used for analysis. | Mass Spec |
| Dissolved gas O2/Ar and triple oxygen isotope discrete samples collected from 16 basin-wide transects of the North Pacific, Hong Kong - Long Beach, CA from the M/V OOCL Tianjin and M/V OOCL Tokyo, 2008-2012 (NPac Cont Ship project) | Finnegan MAT 253 isotope ratio mass spectrometer | |
| Fluxes of lipid biomarkers from the Oceanic Flux Program sediment trap time-series in the North Sargasso Sea from September to December 2016 | Gas chromatograph-mass spectrometer (GC-MS): Agilent 7890A GC coupled to a 5975C MS equipped with triple-axis MS and FID detectors. | Gas chromatograph-mass spectrometer |
| Primary particle flux data (500, 1500, and 3200m depths) of the OFP sediment trap time-series in the northern Sargasso Sea from 1978-2020 | Since 2004, concentrations of organic carbon and nitrogen, as well as their isotopic compositions, have been analyzed by mass spectrometry using either a Europa 20-20 or GV Isoprime mass spectrometer. | Europa 20-20 or GV Isoprime mass spectrometer |
| Organic carbon, d13C, and total nitrogen content of pelagic sediment from the North Atlantic gyre, South Pacific gyre, and Peru Basin from cruises KN223, KNOX02RR, and ODP leg 201 between 2002 and 2013 | Carlo Erba Elemental Analyzer Model 1108 and Finnegan-MAT DeltaPlus isotope ratio monitoring mass spectrometer. The instrument was calibrated and data drift-corrected with USGS-40 (L-glutamic acid) reference material and an in-house glycine standard. | Finnegan-MAT DeltaPlus isotope ratio monitoring mass spectrometer |
| Organic polymer formation and domoic acid adsorption from experiments conducted using water samples collected in northern Gulf of Mexico in 2018 and 2019 | Acquity UPLC system (Waters, Milford, MA) coupled to a 5500 QTRAP triple quadrupole / linear ion trap mass spectrometer equipped with a TurboIonSpray interface (Sciex, Foster City, CA, USA). | Acquity UPLC system coupled to a 5500 QTRAP |
| Noble gas concentrations from water samples collected in August and September 2016 during R/V Neil Armstrong cruise AR7-02 as part of the Overturning in the Subpolar North Atlantic Project (O-SNAP) | Description obtained from the Woods Hole Oceanographic Institution (WHOI) Isotope Geochemistry Facility website (https://www2.whoi.edu/site/igffacility/): Our helium isotope and tritium measurement mass spectrometer system (MS1) was first designed and built in 1975, and has evolved, grown, and been modernized over the years. It is fully automated and runs 24/7. Cryogenic traps are used to transfer and purify Helium (He) and Neon (Ne). The magnetic sector mass spectrometer analyzes the helium isotopes, while the QMS previews samples and measures He and Ne. The automanifold allows the "mounting" of up to 32 samples for measurement and unattended operation. | helium isotope mass spectrometer |
| Elemental ratio data from Mass Spec analysis of newly settled oyster spat from Pamlico Sound, North Carolina from June to August of 2012 (EstuarineMetaDyn project) | Both larval and spat samples were analyzed using a Thermo-Fisher Element2 inductively coupled plasma mass spectrometer with a Teledyne ATLex 300si-x 193nm Excimer laser ablation unit (LA ICP-MS). To correct for mass bias and instrument drift, National Institute of Technology Standards-certified standards (Reference Material 612, 614, and 616) were run at the beginning and end of every 4 slide sequence (~140 burns). | Thermo-Fisher Element2 inductively coupled plasma mass spectrometer |
| Oyster spat site information from the Pamlico Sound, North Carolina from June to August 2012 | Both larval and spat samples were analyzed using a Thermo-Fisher Element2 inductively coupled plasma mass spectrometer with a Teledyne ATLex 300si-x 193nm Excimer laser ablation unit (LA ICP-MS). To correct for mass bias and instrument drift, National Institute of Technology Standards-certified standards (Reference Material 612, 614, and 616) were run at the beginning and end of every 4 slide sequence (~140 burns). | Thermo-Fisher Element2 inductively coupled plasma mass spectrometer |
| Cluster (combined temperature, nutrient concentration, and CO2) results from laboratory experiments with Pseudo-nitzschia australis conducted from 2021 to 2022 | SCIEX 4500 QTRAP mass spectrometer (AB Sciex, Framingham, MA, USA) | |
| N:P ratio experiment physiology and carbonate chemistry laboratory experiments with Pseudo-nitzschia australis conducted from 2021 to 2022 | Prominence UFLC system (Shimadzu, Kyoto, Japan) coupled to a SCIEX 4500 QTRAP mass spectrometer (AB Sciex, Framingham, MA, USA) | SCIEX 4500 QTRAP mass spectrometer (AB Sciex, Framingham, MA, USA) |
| Single-factor temperature experiment physiology and carbonate chemistry from laboratory experiments with Pseudo-nitzschia australis conducted from 2021 to 2022 | SCIEX 4500 QTRAP mass spectrometer (AB Sciex, Framingham, MA, USA) | |
| Results of diel cycle experiments including the full range of volatile organic compounds (VOCs) produced by the diatom P. tricornutum during laboratory experiments conduced in October of 2023 | Proton transfer reaction time-of-flight mass spectroscopy (PTR-TOF/MS; Ionicon, Austria) | |
| Nitrite Oxidoreductase targeted metaproteomics from R/V Kilo Moana cruise KM1128 and R/V Falkor cruise FK160115 in the Central Pacific Ocean in 2011 and 2016 | Thermo Fusion Orbitrap mass spectrometer | |
| Biochemistry of 3 pacific oyster cohorts from Whiskey Creek Hatchery in Netarts Bay, OR, USA from 2009-2011 | Water samples were analyzed by continuous mass flow spectrometry on a GasBench-Delta V system. The remaining sample material was then analyzed by flash combustion (>1000 degrees C) using a Carlo Erba NA 1500 elemental analyzer interfaced by continuous-flow mass spectrometer (Delta-Plus XL). | continuous-flow mass spectrometer |
| Carbonate chemistry of 3 pacific oyster cohorts from Whiskey Creek Hatchery in Netarts Bay, OR, USA from 2009-2011 | Water samples were analyzed by continuous mass flow spectrometry on a GasBench-Delta V system. The remaining sample material was then analyzed by flash combustion (>1000 degrees C) using a Carlo Erba NA 1500 elemental analyzer interfaced by continuous-flow mass spectrometer (Delta-Plus XL). | continuous-flow mass spectrometer |
| Stable isotopes of 3 pacific oyster cohorts from Whiskey Creek Hatchery in Netarts Bay, OR, USA from 2009-2011 | Water samples were analyzed by continuous mass flow spectrometry on a GasBench-Delta V system. The remaining sample material was then analyzed by flash combustion (>1000 degrees C) using a Carlo Erba NA 1500 elemental analyzer interfaced by continuous-flow mass spectrometer (Delta-Plus XL). | continuous-flow mass spectrometer |
| Particulate vitamin B12 profiles from R/V Kilo Moana KM1314 in the N Pacific Ocean (Seattle to Honolulu, Line P, Station ALOHA), Aug-Sept 2013 (Nitrification and Planktonic Biodiversity project) | a quadrupole time-of-flight mass spectrometer (Waters Xevo G2-S QTOF) | |
| Boron isotopes in foraminifera from sediment cores and 2 pH scenarios from the R/V JOIDES Resolution cruises in Shatsky Rise (Pacific), Walvis Ridge (South Atlantic), atolls and guyots (OA Paleocene-Eocene project) | Dual Inlet gas source mass spectrometer systems located at the University of California Santa Cruz – Stable Isotope Laboratory. | Mass Spec |
| Particulate Carbon and Nitrogen data from CTD casts from R/V Hugh R. Sharp HRS1610 in the Mid-Atlantic coastal waters from August 2016 (CyanateInTheSea project) | An isotope ratio mass spectrometer was used for PNPC measurement. | |
| Particulate organic carbon from the formation fluids recovered from the CORKs installed at North Pond; collected on Maria S. Merian cruise MSM20-5 in 2012 | The dried filters were then transferred into a tin capsule before placing within a high temperature combustion CN elemental analyzer (Costech, ECS 4010) connected in-line with a Mass Spectrometer (ThermoFinnigan Delta XP interfaced with a ConFloIV) for analysis of their organic carbon and nitrogen isotopic compositions. | ThermoFinnigan Delta XP |
| Experimental results on inorganic carbon fluxes of Prochlorococcus MED4 cultured under high and low CO2 concentrations (OA phytoplankton physiology project) | Membrane Inlet Mass Spectrometer (MIMS; Pfieffer QMS220) | membrane inlet mass spectrometer (MIMS) |
| Proteomic data of dilution series of bacteria and diatoms using MS (DDA). | QExactive Thermo Finnegan | |
| Proteomic data of dilution series of bacteria and diatoms using MS. | QExactive Thermo Finnegan | |
| Proteomics Colwellia psychrerythraea strain 34H at subzero temperatures. | Thermo Fisher QExactive | |
| Pseudo-nitzschia spp. cell counts, nutrients water temperature and salinity, and concentrations of the toxin domoic acid from weekly samples and offshore cruises with the Northeast U.S. Shelf (NES) Long-Term Ecological Research (LTER) | SCIEX 4600 Qtrap mass spectrometer (Sciex, Framingham, MA, USA) | |
| Pseudo-nitzschia spp. presence-absence and environmental data in Narragansett Bay in Rhode Island, USA and the Northeast U.S. Shelf (NES-LTER transect) from 2018-2023 | Manufactured by Sciex, Framingham, MA, USA | SCIEX 4500 Qtrap mass spectrometer |
| Pseudo-nitzschia spp. presence-absence and environmental data in Narragansett Bay in Rhode Island, USA and the Northeast U.S. Shelf (NES-LTER transect) from 2018-2023 | Manufactured by Agilent Technologies, Santa Clara, CA, USA | 6470 Triple Quadrupole mass spectrometer |
| Mass-to-charge ratio +1 values in microbial cultures (Phaeodactylum tricornutum and cocultures) detected by proton transfer reaction time-of-flight mass spectrometer in 2021 and 2022 | Proton transfer reaction time of flight mass spectrometer. Ionicon Analytik, Innsbruck, Austria. TOF-1000. | TOF-1000 |
| Mass-to-charge ratio +1 values in microbial cultures (Synechococcus WH8102) detected by proton transfer reaction time-of-flight mass spectrometer in 2021 and 2022 | Proton transfer reaction time of flight mass spectrometer. Ionicon Analytik, Innsbruck, Austria. TOF-1000. | TOF-1000 |
| Raw LC-MS/MS data with list of identified peptides in xml format from a proteomic analysis performed on protein extracts of M. ferrooxydans | Excised bands were trypsin-digested and submitted for LC-MS/MS analysis a Thermo LTQ-Orbitrap XL mass spectrometer equipped with an Eksigent Nanoliquid Chromatography 1-D plus system. | Thermo LTQ-Orbitrap XL |
| Raw LC-MS/MS data, with list of identified peptides, and DNA sequences from a proteomic profile of Mariprofundus ferrooxydans | Excised bands were trypsin-digested and submitted for LC-MS/MS analysis which involved a Thermo LTQ-Orbitrap XL mass spectrometer equipped with an Eksigent Nanoliquid Chromatography 1-D plus system. | Thermo LTQ-Orbitrap XL |
| Biogeochemistry, metabolomics, and metagenomics of Florida's Coral Reef from sampling conducted over 15 days in June 2019 | Ultrahigh performance liquid chromatography system (Vanquish UHPLC, Thermo ScientificTM) coupled with an Orbitrap Fusion Lumos Tribid mass spectrometer (Thermo ScientificTM) for untargeted metabolomics | Orbitrap Fusion Lumos Tribid mass spectrometer |
| FASTA file of protein identifications from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015 | Thermo Scientific Q-Exactive Orbitrap mass spectrometer with a Michrom Advance CaptiveSpray source | |
| Ross Sea metaproteome peptide spectral counts searched against Phaeocystis strain transcriptome from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015 | Thermo Scientific Q-Exactive Orbitrap mass spectrometer with a Michrom Advance CaptiveSpray source | |
| Ross Sea metaproteome protein spectral counts searched against Phaeocystis strain transcriptome from net tows during RVIB Nathaniel B. Palmer cruise NBP0601 in December of 2015 | Thermo Scientific Q-Exactive Orbitrap mass spectrometer with a Michrom Advance CaptiveSpray source | |
| Siderophore concentrations found in supernatants of Rhodopseudomonas palustris str. CGA009 grown under different aerobic and anaerobic conditions from laboratory experiments in 2016 | Agilent 6120 LC-MS (Agilent, Santa Clara, CA, USA) | |
| The global proteome of replete laboratory cultures of Ruergeria pomeroyi DSS-3 | Data were collected with a Thermo Fusion Orbitrap mass spectrometer interfaced with a Dionex nano-HPLC configured with 2D active modulation chromatography using the methods of McIlvin and Saito 2021. | Thermo Fusion Orbitrap |
| Vascular plant and microbial biomarkers of dissolved organic matter from San Francisco Bay transects | Lignin phenol monomers were measured as trimethylsilane derivatives using an Agilent 6890N GC/5975 MS. | Agilent 6890N GC/5975 MS |
| FT-ICR MS data from samples collected during a Sargassum inundation event in Puerto Rico in 2018 | Bruker Solarix 12 Tesla Fourier transform (FT) ion cyclotron resonance (ICR) mass spectrometer located at the Helmholtz Zentrum, Munich, Germany. | |
| Single cell N2 fixation measurements from UCYN-A symbiosis in the Southern California Current System from May 2017 (SP1714) and October (SP1724) SCCS cruises. | Samples for single cell N2 fixation and CO2 fixation rates were analyzed using a Cameca nanoSIMS 50L (https://www.cameca.com/products/sims/nanosims) located at Stanford University’s nano shared facilities (SNSF, https://snsf.stanford.edu/equipment/xsa/nanosims.html). | Cameca nanoSIMS 50L |
| Metabolomic fingerprints of individual algal cells using the Single-Probe Mass Spectrometry technique from experiments conducted between May and August of 2017 | Thermo LTQ Orbitrap XL mass spectrometer (Thermo Scientific, Waltham, MA, United States). Mass analyze parameters were as follows: mass resolution 60,000, +4 kV ionization voltage at positive ion mode (0.05–0.07 μA of ion current), 1 microscan, 100 ms max injection time, and automatic gain control on. | Thermo LTQ Orbitrap XL mass spectrometer |
| Flow through sediment core incubations for nitrogen concentration and isotopic fluxes collected in 2013 on the Island of Sylt, Germany in the North Sea. | Isoprime 100 Isotope Ratio Mass Spectrometer | |
| Raw concentrations of individual PLFA compounds from Massachusetts from 2012-2015. | Analyzed samples | 5975C mass spectrometer |
| Sediment PLFA isotope values from Massachusetts collected from 2012-2015 | Used to analyze samples | 5975C mass spectrometer |
| Bulk nitrogen and organic carbon isotopes and sinking flux from a Santa Barbara Basin sediment trap time-series (1994-2017) | VG Isoprime IRMS | |
| Dissolved inorganic nitrogen, chlorophyll-a, and primary production from bioassay experiments during the R/V Hugh R. Sharp cruise HRS1414 in the Mid and South-Atlantic Bight in August of 2014 (DANCE project) | Mass Spectrometer (PP): Europa 20/20 isotope ratio mass spectrometer equipped with an automated nitrogen and carbon analysis for gas, solids, and liquids (ANCA-GSL) preparation module. | Europa 20/20 isotope ratio mass spectrometer |
| Shotgun Metaproteomics of Bering Strait surface water and Chukchi Sea bottom water. | Thermo Scientific Q-Exactive-HF | |
| Shotgun Proteomics of Bering Sea algal incubations. | Agilent 5973N | |
| Shotgun Proteomics of Pseudonitzschia multiseries Multi stress incubations. | Thermo Scientific Q-Exactive tandem mass spectrometer | |
| Single cell mass spectroscopy data collected to investigate metabolomics affected by cell-cell interactions in 2020 and 2021 | Thermo LTQ Orbitrap XL mass spectrometer (Thermo Scientific, Waltham, MA, United States) | Thermo LTQ Orbitrap XL |
| Reactive mass spectrometry determination of C=C bonds in unsaturated lipids in single cells from laboratory experiments performed in 2018 and 2019 | Mass analyze parameters were as follows: mass resolution 60,000, 1 microscan, 100 ms max injection time, and automatic gain control on. A DC ionization voltage (+4 kV in the positive ion mode or −4 kV in the negative ion mode) was applied on a conductive union and transmitted through the solvent to induce ionization of cell lysis at the tip of the micropipette for MS analysis. | Thermo LTQ Orbitrap XL mass spectrometer (Thermo Scientific, Waltham, MA, United States) |
| Mass spectrometry analysis of single mammalian cells obtained using the redesigned T-probe from laboratory experiments performed in 2017 and 2018 | Mass analyze parameters were as follows: mass resolution 60,000, +4 kV ionization voltage at positive ion mode (0.05–0.07 μA of ion current), 1 microscan, 100 ms max injection time, and automatic gain control on. | Thermo LTQ Orbitrap XL mass spectrometer (Thermo Scientific, Waltham, MA, United States) |
| LC-MS/MS sequenced proteins extracted from Stylophora pistillata skeleton; analyzed in the Falkowski lab at Rutgers from 2010-2014 (CROA project) | SOM complexes were digested either by trypsin or proteinase K, and masses and charges of the digested peptides were analyzed on a Thermo LTQ-Orbitrap-Velos ETD mass spectrometer with Dionex U-3000 Rapid Separation nano LC system. | Thermo LTQ-Orbitrap-Velos ETD mass spectrometer |
| Environmental data, nitrifier abundance, ammonia oxidation rates from six from R/V Savannah cruises in the South Atlantic Bight in 2014 (GCE-LTER) | Finnigan MAT-252 isotope ratio mass spectrometer (Thermo Fisher Scientific, Waltham, MA) | Finnigan MAT-252 |
| Speciation of I129 and I127 from water samples collected from cruise KOK1108 in the Western Equatorial Pacific and Kuroshio Extension (Fukushima Radionuclide Levels project) | Mass Spectrometer | |
| Quantification of different chemical forms of cobalamin from San Pedro Ocean Time Series (SPOT) cruises on R/V Nerissa and R/V Yellowfin from March to December 2017 | The LC-MS system used for the pigment quantification consists of a Thermo TSQ Quantum Access electro-spray ionization triple quadruple mass spectrometer, coupled to a Thermo Accela High Speed Liquid Chromatography pump and auto-sampler. | ThermoTSQ Quantum Access |
| Vitamin and methionine quantifications from SPOT cruises during different months from from March to December 2017 | ThermoTSQ Quantum Access electro-spray ionization triple quadrupole mass spectrometer | |
| Retinoid data from SPOT cruises during different months (2016-2017) | The LC-MS system used for the pigment quantification consists of a Thermo TSQ Quantum Access electro-spray ionization triple quadruple mass spectrometer, coupled to a Thermo Accela High Speed Liquid Chromatography pump and auto-sampler. | ThermoTSQ Quantum Access electro-spray ionization triple quadupole mass spectrometer |
| Observational and experimental stable isotope data including stable isotopes from infauna collected in sediment cores at McMurdo Station, Antarctica in September, November and February of 2012 and 2013 (McMurdo Benthos project) | Isotopic analysis was measured on a Eurovector elemental analyzer interfaced with a continuous flow Micromass Isoprime isotope ratio mass spectrometer (irms) at Washington State University. | continuous flow Micromass Isoprime isotope ratio mass spectrometer (irms) |
| Normalized protein abundance data and protein annotations for proteomic data from laboratory cultures of Ruegeria pomeroyi DSS-3 and Alteromonas macleodii MIT1002 in 2022 | Liquid chromatography-mass spectrometry (LC-MS) (Michrom Advance HPLC coupled to a Thermo Scientific Fusion Orbitrap mass spectrometer with a Thermo Flex source) | Thermo Scientific Fusion Orbitrap mass spectrometer |
| Intracellular sulfonate metabolites measured in a variety of eukaryotic and prokaryotic phytoplankton and heterotrophic bacteria using liquid chromatography-mass spectrometry-based metabolomics | Targeted metabolomics data were generated using a Waters Xevo TQ-S triple quadrupole with both reverse-phase and hydrophilic interaction liquid chromatography (HILIC). | Waters Xevo TQ-S triple quadrupole |
| Targeted dissolved metabolite abundances from R/V Knorr cruise KN210-04 in the Western Atlantic Ocean between Uruguay and Barbados from March to May 2013 (Deep Atlantic DOM project) | Phenomenex C18 reversed phase column (Synergi Fusion, 2.1 x 150 mm, 4 um) coupled via a heated ESI source to a triple quadrupole mass spectrometer (Thermo Scientific TSQ Vantage) was used to measure metabolites | Thermo Scientific TSQ Vantage |
| Targeted particulate metabolite abundances from R/V Knorr cruise KN210-04 in the Western Atlantic Ocean between Uruguay and Barbados from March to May 2013 (Deep Atlantic DOM project) | Phenomenex C18 reversed phase column (Synergi Fusion, 2.1 x 150 mm, 4 um) coupled via a heated ESI source to a triple quadrupole mass spectrometer (Thermo Scientific TSQ Vantage) was used to measure metabolites | Thermo Scientific TSQ Vantage |
| Water column Th-234 activity determined using a 4-L technique from samples collected on R/V Melville cruise MV1008 in the Costa Rica Dome in 2010 (CRD FLUZiE project) | Mass spec analysis of the 229:230Th tracer ratio took place at the Woods Hole Oceanographic Institution Analytical Facility. | Mass Spec |
| Experimental results: Fe limited diatoms were supplied with excess 57Fe and the new Fe was tracked to better understand storage mechanisms; conducted in the Kustka lab at Rutgers | Three cells of T. pseudonana were analyzed for relative elemental contents at nanometer scale resolution using Nanoscale Secondary Ion Mass Spectrometry (NanoSIMS). Secondary Ion Mass Spectrometry (SIMS) is a surface analysis technique that provides information about the lateral distribution of any element and its isotopes, and quantitative information about the isotopic composition of a sample. NanoSIMS allows for elemental and isotopic analysis down to the 50-nanomenter scale. | NanoSIMS mass spectrometry |
| Metabolomic data collected during a thermal stress experiment using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i. | Liquid chromatography mass spectrometer | |
| Metabolomic data collected during a thermal stress experiment using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i. | Thermo Fisher Scientific Q Exactive Plus | |
| Untargeted metabolomic data collected during a thermal stress experiment using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i. | Liquid chromatography mass spectrometer | |
| Untargeted metabolomic data collected during a thermal stress experiment using reef building corals collected in Kāne'ohe Bay, O'ahu, Hawai'i. | Thermo Fisher Scientific Q Exactive Plus | |
| Trace Metal Concentrations from Barbados incubation experiment, February 2012 (ADIMA project) | Samples were introduced into the instrument with a peristaltic pump at a flow rate of ~120 L min-1 and passed through an ESI-PC3 Peltier cooled spray chamber before entering the torch | Mass Spec |
| Net tow metaproteoome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes in units of normalized peptide spectral counts from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018 | Thermo Orbitrap Fusion mass spectrometer | |
| Net tow metaproteome of Trichodesmium species mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes in units of normalized protein spectral counts from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018 | Thermo Orbitrap Fusion mass spectrometer | |
| Metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters, station BATS, and station ALOHA between 2000 and 2018 | Thermo Orbitrap Fusion mass spectrometer | |
| FASTA file of sequences in Trichodesmium field metaproteomes mapped to a Trichodesmium metagenome plus cyanoGEBA species genomes from samples collected in the Atlantic and Pacific Ocean between 2000 and 2018 | Thermo Orbitrap Fusion mass spectrometer | |
| Single colony metaproteomes of Trichodesmium from samples collected in North Atlantic surface waters during the R/V Atlantis cruise AT39-05 in March of 2018 | Thermo Orbitrap Fusion mass spectrometer | |
| Trichodesmium nutrient-limited proteomes in 380 and 750 uatm CO2 from experiments conducted at the University of Southern California from 2011-2013 (HiCO2_AdaptCyano project) | With MS1 scans at an Orbitrap resolution of 60 K, 350–1,800 m/z scan range, 2.0e5 automatic gain control target, and a maximum injection time of 35 ms. MS2 scans were analysed on the linear ion trap in topN data dependent mode at a cycle time of 3 s using normal scan rate and range with a maximum injection time of 75 ms and a 0.7 m/z isolation window. Charge states of 2–7 were analysed with a dynamic exclusion of 15 s with a mass tolerance of 10 p.p.m. Monoisotopic precursor selection was used, and a user-defined lock mass of 445.12003 m/z. | Thermo Fusion mass spectrometer |
| Experimental data testing the N2 and CO2 fixing activity of the UCYN-A/haptophyte symbiosis in nitrate and ammonium rich waters in the California Current from May to October 2017 | Samples for single cell N2 fixation and CO2 fixation rates were analyzed using a Cameca nanoSIMS 50L (https://www.cameca.com/products/sims/nanosims) located at Stanford University’s nano shared facilities (SNSF, https://snsf.stanford.edu/equipment/xsa/nanosims.html). | Cameca nanoSIMS 50L |
| Underway O2 Argon (Ar) from NOAA Ship Ronald H. Brown cruise RB-08-02 in the Southwest Atlantic sector of the Southern Ocean near South Georgia Island in 2008 (SO_GasEx project) | Quadrupole mass spectrometer is Michael Bender's second instrument, a Pfeiffer Vacuum Prisma. | Quadrupole mass spectrometer - A Pfeiffer Vacuum Prisma |
| Amphi-enterobactins and related siderophore concentrations found in Vibrio harveyi supernatants and pellets from laboratory experiments in 2017 | Agilent 6120 LC-MS (Agilent, Santa Clara, CA, USA) | |
| High resolution mass spectra for amphi-enterobactin related siderophores from Vibrio harveyi from laboratory experiments in 2017 | LTQ-Orbitrap XL mass spectrometer (ThermoFisher) | |
| Dissolved B vitamins from Hotmix expedition, B/O Sarmiento de Gamboa Hotmix, May 2014 | ThermoTSQ Quantum Access electro-spray ionization triple quadrupole mass spectrometer | |
| Particulate B vitamins from Hotmix expedition, B/O Sarmiento de Gamboa Hotmix, May 2014 | ThermoTSQ Quantum Access electro-spray ionization triple quadrupole mass spectrometer | |
| Particulate B vitamins from Vitacopss, San Pedro Ocean Time series (SPOT), 2015 from R/V Yellowfin near Los Angeles, California from 2015-2016 (B-vitamin plankton succession project) | ThermoTSQ Quantum Access electro-spray ionization triple quadrupole mass spectrometer | |
| Water column analytical data from the Chile Triple Junction collected on two cruises aboard the R/V Melville during February-March 2010 and April 2012 | A dual collector, 21 cm radius, sector-type mass spectrometer specially designed for helium isotope analyses | |
| Depth profiles of oceanographic parameters in spring and summer from R/V Terrapin, R/V Hugh R. Sharp multiple cruises in Chesapeake Bay, 2010-2011 (LiDZ project) | "A membrane inlet mass spectrometer was modified to perform rapid, high-precision measurements of dissolved 02, and Ar in water. The instrument pumps water at < 1 mL per min through semipermeable microbore silicone; tubing positioned inside an inlet vacuum line of a quadrupole mass spectrometer. Precise pumping and temperature control of the water sample contribute to high signal stability and reproducibility. Dissolved gas concentrations are determined from intensities of the mass spectrometer signals in the multiple ion detection mode. Precision (coefficient of variation) is | membrane inlet mass spectrometer |
| Raw proteome mass spectrometry data (.mzML files) from pacific herring embryos sampled at Semiahmoo Bay between February and April 2022 | Lumos Orbitrap | |
| Young-of-the-year Baltic flounder otolith chemistry analysis from 2014 to 2017 at Baltic Sea sites in Sweden and Latvia. | New Wave (ESI) 193-nm Solid State Laser Ablation Unit coupled to a PerkinElmer DRC-e quadrupole ICP mass spectrometer. | PerkinElmer DRC-e quadrupole ICP mass spectrometer |
| Bulk stable isotopes (d13C, d15N) of size-fractionated zooplankton collected near the Chatham Rise on the R/V Tangaroa SalpPOOP (TAN1810) cruise in Oct. and Nov. of 2018 | Elementar Vario EL Cube or Micro Cube elemental analyzer (Elementar Analysensysteme GmbH, Hanau, Germany) interfaced to either an Isoprime VisION IRMS (Elementar UK Ltd, Cheadle, UK) or a PDZ Europa 20-20 isotope ratio mass spectrometer (Sercon Ltd., Cheshire, UK) | PDZ Europa 20-20 isotope ratio mass spectrometer (Sercon Ltd., Cheshire, UK) |
| Compound specific isotopic analysis (15N) of the amino acids of size-fractionated zooplankton collected near the Chatham Rise on the R/V Tangaroa SalpPOOP (TAN1810) cruise in Oct. and Nov. of 2018 | Thermo Trace GC 1310 gas chromatograph coupled to a Thermo Scientific Delta V Advantage isotope-ratio mass spectrometer via a GC IsoLink II combustion interface. | Thermo Scientific Delta V Advantage isotope-ratio mass spectrometer |
| CSIA 15N AA data from phytoplankton, microzooplankton, and Calanus pacificus. | Used for sampling | Delta V Plus |