General term for a laboratory instrument used for deciphering the order of bases in a strand of DNA. Sanger sequencers detect fluorescence from different dyes that are used to identify the A, C, G, and T extension reactions. Contemporary or Pyrosequencer methods are based on detecting the activity of DNA polymerase (a DNA synthesizing enzyme) with another chemoluminescent enzyme. Essentially, the method allows sequencing of a single strand of DNA by synthesizing the complementary strand along it, one base pair at a time, and detecting which base was actually added at each step.
Dataset Name | Brief Description |
---|---|
16S and 18S rRNA gene amplicon sequences | 16S and 18S rRNA gene amplicon sequences |
16S and nifH Sequence Data | |
16S rRNA accessions: IODP Site 1244 | 16S rRNA gene amplicon sequence accessions, Hydrate Ridge, offshore Oregon |
16S rRNA gene and particulate monooxygenase diversity | 16S rRNA gene and particulate monooxygenase diversity |
16S rRNA gene from RNA | 16S rRNA gene (from RNA) |
16S rRNA sequence and collection data | Microbial 16S rRNA sequence data from East Pacific Rise biofilms |
16S rRNA sequences for outplanted Acropora cervicornis sexual recruits | |
16S V4 rRNA gene tag sequences from reef seawater | 16S V4 rRNA gene tag sequences from reef seawater |
18S rRNA gene tag sequences from DNA and RNA | |
515F-926R 16S rRNA accessions | 515F-926R 16S rRNA accessions, Mariana and Kermadec trenches, 2014 |
5a_field collection | Field collection data for taxa detected in nauplii guts |
5b_nauplii gut taxa | Taxa detected in field caught nauplii guts |
5c_BLAST results | GenBank BLAST results of copepod nauplii gut contents |
5d_molecular id of copepod guts | Identification of copepod gut contents |
Accession numbers (P. carterae viruses and field samples) | Accession numbers for genetic sequences from virus-enriched field samples and P. carterae CCMP 645 culture co-infections |
Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022 | Acropora cervicornis 16S Sequences Metadata and NCBI SRA accessions associated with Williams et al., 2022 |
Acropora cervicornis bleaching sequences | Acropora cervicornis bleaching sequences |
Acropora cervicornis transcriptomes: nutrient- and disease-exposed | |
Acropora cervicornis white band exposure experiment survival outcomes | |
Acropora cervicornis white band exposure experiment survival outcomes | |
Acropora cervicornis white band exposure experiment survival outcomes | |
Acropora cervicornis white band exposure experiment survival outcomes | |
Acropora palmata genotypes | Acropora palmata multilocus genotypes derived from five microsatellite markers |
Acropora palmata genotypes for clonal age | Mutations at microsatellite loci of Acropora palmata |
Acropora palmata mutations | Mutations at microsatellite loci of Acropora palmata |
Acropora palmata symbiont genotypes | Symbiodinium ‘fitti’ multilocus genotypes derived from 13 microsatellite markers |
Allele frequencies and FST estimates | |
Allele frequencies and FST estimates | |
Alteromonas ancestor | Clones of Prochlorococcus MIT9312 and link to BioProject |
Alviniconcha gill transcriptomes | GenBank Short Read Archive (SRA) sequence accession numbers metatranscriptomic data from the gills of Alviniconcha species from R/V Falkor in the Eastern Lau Spreading Center, Lau Basin |
Amplicon sequencing of ammonia oxidizing archaea amoA gene | Amplicon sequencing of ammonia oxidizing archaea amoA gene from cruise KM1314, Aug. 8 - Sept. 4, 2013 in the northern Pacific |
Assembled metagenome sequences > 500 bp | Assembled metagenome sequences > 500 bp from EPR, Lo'ihi, and control |
Asteroid viral and bacterial metagenome genetic accession information | |
AT26-18_FLOCS_DNA16S | 16S rRNA gene amplicon sequences from FLOCS experiments at the Juan de Fuca Ridge CORKs |
AT39-01 CathodicEET Amplicons | |
Atlantic silverside (Menidia menidia) cDNA transcriptome and TSA accessions | Atlantic silverside (Menidia menidia) cDNA transcriptome and TSA accessions |
Atlantic silverside (Menidia menidia) raw low-coverage genomic sequence accessions | Accession numbers for raw low-coverage genomic sequence reads from 876 different Atlantic silverside individuals |
Atlantic silverside RNA-seq reads | |
Bleached octocoral genotypes | Bleached Octocoral Symbiont Cell Counts |
BOWLS sample log | Sample log for specimens collected for genomics analyses |
BOWLS sample log | Sample log for specimens collected for genomics analyses |
Breviolum antillogorgium microsatellite loci | Microsatellite loci for B. antillogorgium cultures |
Brothers Volcano Metagenome-Assembled Genome Accession Numbers | Brothers Volcano Metagenome-Assembled Genome Accession Numbers |
BWLD-C7 subsurface microbes | BWLD-C7 subsurface microbes |
Ca. Aquarickettsia rohweri transcriptomes | |
Calanus finmarchicus transcriptomics | Links to a microarray and transcriptome for C. finmarchicus |
Candidatus Nitrosopelagicus brevis strain U25 | |
Cannon_2013_T2: NCBI accessions | Hemichordata and Echinodermata NCBI accessions |
Cannon_2014_S2: Hemichordata and Echinodermata sample log and accessions | Hemichordata and Echinodermata transcriptome NCBI accessions |
Caribbean PaV1 survey | Caribbean wide survey of PaV1 prevalence in adult lobsters, 2006-2007 and 2010-2011 |
Chemosynthetic biofilm diversity | Samples sequenced from chemosynthetic biofilm communities from deep-sea hydrothermal vents |
Community 16S rRNA gene sequences | 16S rRNA accessions |
Coral 16s rRNA | |
Coral Associated Microbes on Mo'orean Coral Reefs | Bacteria and Archaea found on coral, sediment, and water in Mo’orea, French Polynesia |
Coral cDNA Expressed Sequences | cDNA Expressed Sequence Tags for the corals Acropora palmate and Orbicella faveola |
Coral colony sequece accessions: Hidden resilience to recurrent bleaching | |
Coral colony sequence accessions: The genomics of recovery from coral bleaching | |
Coral ESVs: Galaxaura | Microbial ESV counts for corals exposed to Galaxaura |
Coral ESVs: Sargassum | Microbial ESV counts for corals exposed to Sargassum |
Coral images and accession numbers | Species images and accession numbers for tissue, mucus, and holobionts analyzed. |
coral life stages - Illumina | Illumina sequenced 16S rRNA genes amplified from different life stages of 2 corals |
coral microbe T-RF - biogeography | Hawaiian coral terminal-restriction fragment length polymorphism (T-RFLP) analysis |
coral microbe T-RF - temp stress | Terminal restriction fragments from 16S rRNA genes amplified from coral-associated microbes, response to temperature stress |
Coral reef seawater microbial communities | Coral reef seawater microbial communities |
coral-microbe T-RF - development | Specificity of associations between bacteria and the coral Pocillopora meandrina during early development |
coral-microbe T-RF - spawning | T-RFLP, response of the microbial community to coral spawning, lagoon and reef flats, Oahu, 2006-7 |
Crassostrea virginica gonad MBD-BSseq | GenBank metadata for Eastern oyster gonad methylation and OA |
CsRV1 virus genotypes across the Atlantic coast of N and S America | |
Cultures isolated from A. bipinnata 2008-2016 | Symbiodinium cultures isolated from adult colonies of the octocoral Antillogorgia bipinnata in 2008, 2013 and 2016, grown at either 26 or 30 degrees C |
Cultures isolated from A. bipinnata 2008-2016 | Symbiodinium cultures isolated from adult colonies of the octocoral Antillogorgia bipinnata in 2008, 2013 and 2016, grown at either 26 or 30 degrees C |
Cuvierina SRA | Cuvierina SRA, accessions, collection info |
Cyanomyovirus genome sequences | Genbank accession numbers for genome sequences of cyanomyoviruses collected from the coastal waters of North America |
dataset2_Krug_et_al_2012: Elysia accessions | Elysia spp. accessions for COI, 16S, H3 |
dataset3_Supp1_Krug_et_al_2011: Elysia sequences | Accessions for COI, 16S, H3 for 18 Elysia species |
dataset4_Krug_et_al_2012: Philine sequences | Accessions for 16S for Philine species |
dataset5_Vendetti_et_al_2012: Elysia pusilla sequences | Accessions for COI, 16S, H3 from Elysia pusilla and E. spp. |
dataset6_Krug_et_al_2013: Sequences | Accessions for COI, H3 for three species complexes |
dataset8- Oxynoe sequence data | Species names, sample codes, and collection details for sequenced taxa used in phylogenetic analyses. |
Deep Biosphere Eukaryotic rRNA | Sub-seafloor sediment eukaryotic rRNA collected on JOIDES Resolution Legs 201 and 204, R/V Maria Merian at North Pond, and R/V Meteor at the Benguela Upwelling System. |
DHAB halocline sediment pyrotags - eukaryotes | 454 pyrotags for Eukaryote taxa in deep hypersaline anoxic basin (DHAB) halocline sediments |
DHAB halocline sediment pyrotags - prokaryotes | 454 pyrotags for Bacterial and Archaeal taxa in deep hypersaline anoxic basin (DHAB) halocline sediments |
Diatom amplicon sequencing variants from Narragansett Bay 2008-2014 | Diatom amplicon sequencing variants from Narragansett Bay 2008-2014 |
Diatom Matrix RNAseq | NCBI accessions |
Diatom microbiome | Identification of microbiome from different Pseudo-nitzschia species |
Diatom microbiome | Identification of microbiome from different Pseudo-nitzschia species |
dinoRNAV dynamics in the reef-building coral Porites lobata | dinoRNAV dynamics in the reef-building coral Porites lobata |
Disease Exposure Experiment | Acropora cervicornis coral disease exposure experiment |
DNA and cDNA (RNA) 18S V4 tag sequences from 5m and DCM | |
DNA microsatellite alleles - Eelgrass ramets | DNA microsatellite alleles for eelgrass ramets from two sites in MA |
DNA microsatellite alleles - Flowering shoots and seeds | DNA microsatellite alleles from flowering shoots and seeds |
Doliolid diet: zooplankton abundance | Zooplankton abundances |
Domel_2017_T1: Pallenopsis patagonica specimen and outgroups with accessions | Pallenopsis patagonica specimen and outgroups with accessions |
DYEatom: Metatranscriptome accessions and assembled contigs | |
EPR 9 North Plume Particles | Bacterial 16S rRNA sequences from hydrothermal plume particles |
EPR 9N Inactive Sulfides | Bacterial 16S rRNA sequences from inactive sulfide chimneys |
Etelis spp. rangewide genetic data | |
ETNP ODZ Metagenomes April 2012 | Assembled metagenomes collected in the Eastern Tropical North Pacific Oxygen Deficient Zone in April 2012 on TN278 |
ETNP Viromes | Accession Numbers of Viral Metagenomes from the ETNP |
Evolve and re-sequence experiment - laboratory selection lines | Evolve and re-sequence experiment - laboratory selection lines |
Evolve and re-sequence experiment - wild populations | Evolve and re-sequence experiment - wild populations |
Experimental coral treatments | DNA results of Pocillopora cf. meandrina and Acropora hyacinthus |
Exudate Uptake Incubations - Microbial Abundances (Flow Cytometry) | Exudate Uptake Incubations - Microbial Abundances (Flow Cytometry) |
Fe_Vit12_MetaT_Co-Limitation_RossSea_2014 | Iron and vitamin B12 metatranscriptomincs co-limitation in Ross Sea waters, 2014 |
FRT-Dcyl-Symb_2014 | Dendrogyra cylindrus 23S Illumina 2014 - relative abundance |
FRT-Dcyl-Symb_2015-2016 | Dendrogyra cylindrus 23S Illumina 2015-16 - relative abundance |
GenBank accessions | GenBank accession numbers and links for microbial isolates from sediment samples collected at Paleochori Bay, Milos island, Greece |
GenBank accessions from marine sediment samples - Costa Rica Margin | Costa Rica Margin sediment accessions |
Gene expression of Eurytemora affinis (saline and freshwater) | |
GeoMICS Viromes | |
Gill 16S rRNA amplicon sequencing | GenBank Short Read Archive (SRA) sequence accession numbers for 16S rRNA gene amplicon data from the gills of Alviniconcha species, Ifremeria nautilei, and Bathymodiolus septemdierum. |
Glaucus atlanticus sample voucher log | Glaucus atlanticus sample locations, museum voucher and GenBank accession numbers |
Glaucus species COI and 16S positions and bases | Dataset for Glaucus Study II: locality data, GenBank and museum voucher numbers, with molecular synapomorphies |
Glaucus spp vouchers and accession numbers | Glaucus specimen collection locations, museum vouchers and GenBank accession numbers |
Groundwater microorganism retroelement protein sequences | Protein sequences from diversity-generating retroelements in groundwater microorganisms |
Gulf of Alaska copepods: annotated transcriptomes | |
Halanych-Kocot_2014_T1: NCBI accessions | Antarctic invertebrate collection locations and NCBI SRA accessions |
Halanych-Kocot_2014_T3: Best TLR genes from BLASTP search | Best toll-like receptors (TLR) genes from Lophotrochozoa BLASTP search |
Halanych-Kocot_2014_T4: Best other LRR genes from BLASTP search | Best other leucine-rich repeat (LRR) genes from BLASTP search |
Halanych_2013_T1: NCBI accessions | NCBI accessions |
Haloptilus longicornis SRA | H. longicornis SRA, accessions, collection info |
haplotype_accession_numbers | Accession numbers for planktonic ciliate haplotypes |
Harder_2016_T1: sea spider Pallenopsis sampling sites and COI NCBI accessions | Sea spider Pallenopsis sampling sites and COI NCBI accessions |
Havird_2015_T1: NCBI accessions: COX and PXDN | NCBI accessions |
Hawaiian reef fish genetic accessions 2016 | Genetic accessions at NCBI Genbank |
Heterosigma akashiwo acclimation | Heterosigma akashiwo acclimation - BioProject PRJNA377729 |
HRR 18S full-length sequence BLAST results | HRR 18S full-length sequence BLAST results |
HRR Metabarcoding | HRR metatranscriptome |
Hurricane Harvey Coral Gene Expression | |
Invertebrate Barcodes from Papua New Guinea | |
IODP360 - Annotations | |
IODP360 - FPKM values | |
IODP360 - iTAG and metatranscriptome data | |
IRN-BRU MV1405 Transect 5 BioGeoChem | |
ITS_sequence_accessions | Diatom ribosomal DNA sequence accession numbers. |
Janosik_2013_T2: outgroup species and accessions | Outgroup species and accessions |
Janosik_2013_T3: matrix of Odontasteridea morphological characters | Matrix of Odontasteridea morphological characters |
Jason-II sample log AT26-10 | sample log from Jason-II dives for Sievert |
JTMD Mytilus population genetics | Population analysis and metagenomics of Japanese tsunami marine debris mussels |
Juan de Fuca Ridge Flank SSU rRNA gene sequences | SSU rRNA gene sequences from marine sediments, marine subseafloor, and deep seawater |
Kaneohe Bay RNA virus metagenomes | Pyrosequencing reads (454) of marine RNA virus metagenomes |
Kāneʻohe Bay Time-series - microbial community | Kāneʻohe Bay Time-series - microbial community |
kinetoplastid SSU rRNA seq. | Microbial metatranscriptomics: upper and lower halocline water column |
Krill barcodes | Euphausiid DNA barcode metadata and accession numbers from global oceans |
Lau Basin and Loihi Seamount microbial mats | Metegenomic sequences from Lau Basin low temperature vents and Loihi Seamount. |
Lau Basin Bacterial Low Temp Geomicrobiology | Bacterial 16S rRNA sequences from seafloor rocks (silicates and sulfides) |
Lebetimonas Genomes | Whole genome sequence data from bacterial isolates from venting fluids at NW Rota Seamount, collected in 2009 and 2010. |
Long-term diatom microbiome data and analysis package | |
MBRS Symbiodinium OTU | Symbiodinium OTU |
McIlroy_2016: Symbionts genotypes in Orbicella faveolata | McIlroy_2016: Genotype of symbionts detected in Orbicella faveolata recruits over time |
McIlroy_2017: Symbionts genotypes in Orbicella faveolata | McIlroy_2017: Genotype of symbionts detected in Orbicella faveolata recruits |
Mesocosm microbial analyses results | |
Metabarcoding zooplankton at station ALOHA: NCBI SRA accession numbers | NCBI Sequence Read Archive (SRA) accession numbers for fastq sequence files for each zooplankton community sample |
Metabarcoding zooplankton at station ALOHA: OTU tables and fasta files | Operational taxonomic unit (OTU) tables and fasta files for representative sequences from each OTU |
Metabolite Uptake Incubations - Microbial Abundances (Flow Cytometry) | Metabolite Uptake Incubations - Microbial Abundances (Flow Cytometry) |
Metagenome | Metagenomic data |
Metagenome of Bleached and Non-bleached corals | |
Metagenomic sequences: IODP Site 1244 | NCBI accession numbers for metagenomic sequences: IODP Site 1244, Hydrate Ridge, offshore Oregon |
metatranscriptomics - Niskin vs. in situ | Microbial metatranscriptomics: Niskin vs. in situ sampler |
metatranscriptomics - upper_lower halocline | Microbial metatranscriptomics: upper and lower halocline water column |
Microbe priority experiment counts | Microbe priority experiment counts (OTU counts) |
Microbes priority annotations (OTU taxonomy) | Microbes priority annotations (OTU taxonomy) |
Microbial Alpha Diversity | Microbial Alpha Diversity |
Microbial community composition of the Cinder Cones Cold Seep | Microbial community composition of the Cinder Cones Cold Seep |
Microbial eukaryotic diversity: Axial Seamount SRA | Axial seamount SRA |
Microbial eukaryotic diversity: Gorda Ridge SRA | Gorda Ridge SRA |
Microbial eukaryotic diversity: Mid-Cayman Rise SRA dataset | 18S rRNA amplicon sequencing of microbial eukaryotes |
Microbial eukaryotic focused metatranscriptome data | |
Microbial incubation diversity and geochemistry | Microbial diversity and geochemistry of marine sediment mesocosm, Cape lookout bight, North Carolina |
Microbial isolates | Microbial isolates from sediment samples collected at Paleochori Bay, Milos island, Greece |
Microbiome dynamics of coral reef and cleanerfish | Microbiome dynamics of coral reef and cleanerfish |
Microsatellite primers for Pollicipes elegans | Microsatellite primer sequences from Pollicipes elegans |
MMETSP transcriptome sequences | Eukaryote transcriptome assemblies and associated metadata available on iMicrobe |
Mollusc voucher and accession numbers | Mollusc museum voucher and GenBank accession numbers |
MtCOI sequence accessions - Pollicipes elegans | Cytochrome oxidase I DNA sequences from Pollicipes elegans |
Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female | Multiyear RNA-Seq of Neocalanus flemingeri stages CV and Adult Female |
NCBI accession numbers for RNAseq data from five coral species experimentally exposed to SCTLD | NCBI accession numbers for RNAseq data from five coral species experimentally exposed to SCTLD |
NCBI accession numbers for S. arcuata and S. meunieri | NCBI accession numbers for S. arcuata and S. meunieri |
Neocalanus flemingeri incubation experiment: gene expression | |
Nitrosopelagicus brevis genome | NCBI accession number link to the closed genome of Nitrosopelagicus brevis CN25 |
North Atlantic subseafloor clay metagenomes and metatranscriptomes | 16S rRNA gene datasets, metagenomes, and metatranscriptomes |
Nudibranch accession numbers | Nudibranch accession numbers |
OA Samples | Accession numbers from acidification mesocosms and original in situ samples from coastal and offshore water station at the Pivers Island Coastal Observatory January to February 2017 |
OC1703A Sediment 16S rRNA and 16S rRNA gene amplicon sequences | OC1703A Sediment 16S rRNA and 16S rRNA gene amplicon sequences |
OC1703A Sediment MG-MT | OC1703A Sediment MG-MT |
OC1703A Sediment MG-MT | OC1703A Sediment MG-MT |
OC1703A Sediment nifH amplicon sequences | OC1703A Sediment nifH amplicon sequences |
OTU table for 18S rRNA gene tag sequences from DNA and RNA | |
Oyster Cohort Genetics | Database of DNA microsatellite alleles for hatchery-produced oyster cohorts |
Oyster Cohort Traits | Performance traits (e.g., survival, growth, size) for hatchery-produced oyster cohorts |
P. xiphias SRA | P. xiphias SRA, accessions, collection info |
Palau lakes: invertebrate barcodes | Palau lakes: invertebrate barcodes |
Palau lakes: voucher summary | Palau lakes: voucher summary |
Peru Margin iTAGs | Fungal iTAG analyses on Peru Margin sediment core samples |
planktonic ciliates: DNA accessions | Planktonic ciliate DNA sequence accession numbers at NCBI GenBank |
Pocillopora sequences from 2019 | |
Poland_2013: Polyp count by symbiont type summary | Polyp count by symbiont type summary |
Poland_2013: Polyp count with multiple symbiont types | Polyp count with multiple symbiont types |
Poland_2013: Symbiont types by site and month | Symbiont types by site and month |
Pollicipes elegans aggregation genotypes | Genotype data for the three adult barnacle aggregations - Pollicipes elegans |
Pollicipes elegans larval genotypes | Larval genotype data for Pollicipes elegans |
Polychaete DNA sequences | DNA sequence data deposited on GenBank for polychaetes used in the project studying the evolution and mechanics of burrowing. |
Pooled sequencing data from field-collected Eurytemora affinis | |
Population genetic surveys of Zostera marina | A re-sampling of historical population genetic surveys of Zostera marina from Bodega, Tomales, and San Francisco Bays USA |
Prokaryotic and eukaryotic abundance in BATS microbial communities | |
Pro_ancestor | Clones of Prochlorococcus MIT9312 and link to BioProject |
Pseudo-nitzschia amplicon sequence variants (ASVs) | Pseudo-nitzschia asv |
Pseudo-nitzschia diversity and viral titers | |
Pseudo-nitzschia presence/absence of amplicon sequence variants (ASVs) | Pseudo-nitzschia asv |
pyrosequencing clade | Symbiodinium sequence abundance in St. John, US Virgin Islands from 1994-2010 |
Quantitative PCR: Dilution test | Quantitative PCR: Dilution test |
Quantitative PCR: Field Validation | Quantitative PCR: Individuals |
Quantitative PCR: Individuals | Quantitative PCR: Individuals |
RADseq data from Atlantic silversides used for linkage and QTL mapping | |
Raw low-coverage whole genome sequencing reads | |
Raw low-coverage whole genome sequencing reads | |
RB-TnSeq Data | |
Red Invasive Seaweed - Raw Genotypes | The genotypes from 9 microsatellites generated on individuals of the red invasive seaweed Gracilaria vermiculophylla. |
Reef biogeochemistry, metabolomics, and metagenomics | Reef biogeochemistry, metabolomics, and metagenomics |
Reef biogeochemistry, metabolomics, and metagenomics | Reef biogeochemistry, metabolomics, and metagenomics |
Reef biogeochemistry, metabolomics, and metagenomics | Reef biogeochemistry, metabolomics, and metagenomics |
Reef Fish Genetic Accessions 2019 | Hawaiian Reef Fish Genetic Accessions |
Reef fish NCBI genetic sequence accession numbers | |
RHB_ostracods | Ostracod species from the Ron Brown cruise - Sargasso Sea |
RNA sequence accessions at NCBI | |
RNA sequences | NCBI RNA accessions for multi-stressor conditions of polar fishes |
RNAseq data used to identify viral genomes | Alphaflexivirus Genomes in Stony Coral Tissue Loss Disease-Affected, Disease-Exposed, and Disease-Unexposed Coral Colonies in the U.S. Virgin Islands |
RNASeq Exp5 | Predicted regulon of the regulatory RNA ryhB in Vibrio fischeri |
Rockfish microhaplotype sequences | Links to sequence files associated with this project |
Ross Sea sequences | Ross Sea sequences link |
Salp genome and transcriptome | Antarctic salp genome and RNAseq transcriptome |
Sample Accession Numbers | Project accession and library information on each experimental sample |
Sample key: Dcyl_Symb_2014 | Dendrogyra cylindrus 23S Illumina 2014 sample key |
Sample log | Metadata from sediment samples collected at Paleochori Bay, Milos island, Greece |
Samples Sequenced for Metabarcoding | Cyanobacterial and diatom samples sequenced for metabarcoding |
Santa Monica Bay 18S-V4 sequencing | |
SBDOM11 mini-remineralization expt. | bacterial abundance, growth rates, and DOC from SBDOM11 cruise |
SCTLD rapid microbiome characterization | SCTLD microbiome |
Seawater data and site descriptions | Site descriptions and physical environmental conditions of reefs where sampling occurred. |
sea_fan_parasite_sequences | Accession numbers for Labyrinthulomycetes detected in sea fans |
sea_fan_sequences | Accession numbers for Gorgonia ventalina (sea fan) sequencing data |
Sedtrap Metagenomes | Marine sediment trap metagenomes |
Sedtrap Metagenomes | Marine sediment trap metagenomes |
Sedtrap Metagenomes | Marine sediment trap metagenomes |
SEEPC Bivalve DNA Barcoding Results | Bivalve larvae DNA barcode results |
Sequencing Reads | Accession numbers |
SERC 2019 viral dilution incubations | Gene copy number counts and 16S analyses of July 2019 Rhode River surface water incubated with or without viral dilution |
SERC time series | Water quality data, gene copy number counts, and 16S analyses from Rhode River samples collected at SERC |
SIMCO 1 and 2: Taxonomic transcript bins | Taxonomic binning of transcripts from samples collected during the SIMCO1 and SIMCO2 |
SIMCO 1 and 2: Transcripts per liter | Transcript counts per liter from samples collected during the SIMCO1 and SIMCO2 |
SIMCO metatranscriptome sequence accessions | SIMCO metatranscriptome sequence accessions |
Single amplified genomes | Single amplified genomes (SAGs) |
Single-cell genomics of Chloroflexi | Chloroflexi accessions |
Sinking particle sample information for BATS microbial communities | |
South China Sea 16S | 16S gene sequencing of microbial communities from South China Sea sediments |
Sponge holobiont accessions and metadata | Sponge holobiont accessions and metadata |
Sponge Symbiont Carbon and Nutrient Cycling | Sponge Symbiont Carbon and Nutrient Cycling |
Sponge-Associated Microbial Communities (via 16S-V4 rRNA amplicon sequencing) Following Storm-Driven Flooding | |
SPOT virus 18S rDNA peak abund | SPOT Microbial Observatory Protist 18S rDNA TRFLP relative peak abundance |
SPOT virus 3H peak abund | SPOT Microbial Observatory Myovirus g23 3' TRFLP relative peak abundance |
SPOT virus 5H peak abund | SPOT Microbial Observatory Myovirus g23 5' TRFLP relative peak abundance |
SPOT virus ARISA | SPOT Microbial Observatory Bacterial ARISA relative peak abundance |
ssDNA-dsDNA viromes | ssDNA-dsDNA viromes from the Great Lakes, off Bermuda and the South Pacific |
SSU rRNA Gene Sequencing from SPOT | SSU rRNA Gene Sequencing from SPOT |
SSU rRNA Gene Sequencing from SPOT | SSU rRNA Gene Sequencing from SPOT |
Substrate-specific metabolic responses of model marine bacteria | Substrate-specific metabolic responses of model marine bacteria - metadata for transcriptomic expression data |
Sulfitobacter phage accessions | Sulfitobacter phage accessions |
Switch RNAseq | Transcriptional profile of marine bacterium Ruegeria pomeroyi in a three-member co-culture study |
Symbiodiniaceae communities (via ITS-2 rDNA amplicon sequencing) in reef-associated fish feces, corals, water and sediments | |
Symbiodiniaceae communities in corals with ITS-2 rDNA amplicon sequencing | |
Symbiont accession numbers | Accession numbers of symbiotic algae in coral |
Symbiont type in recovering corals | symbiont type in recovering Porites divaricata corals |
Synechococcus accessions | Synechococcus accessions |
Synechococcus growth and genetic sequence accessions from pCO2 experiments | |
T. pseudonana starve-recover experiments: Cell information | |
T. rotula Common Garden Experiment | T. rotula Common Garden Experiment |
T. rotula microbiome global sample | T. rotula microbiome global sample |
Thalassiosira Fe and light limitation - ENA accessions | ENA accessions for transcriptomes of T. oceanica and T. weissflogii grown in varied Fe and light |
Thalassiosira Fe and light limitation - NCBI and iMicrobe accessions | NCBI and iMicrobe accessions for transcriptomes of T. oceanica and T. weissflogii grown in varied Fe and light |
Thaumarchaea transcriptomes | Thaumarchaea transcriptomes |
The Long Term Phytoplankton Evolution Experiment: Genomic Analysis | The Long Term Phytoplankton Evolution Experiment: Genomic Analysis |
Tidal study of seawater microbial communities | |
Transcription in marine bacteria | Transcripts in four cultivated marine bacteria |
Transcriptomes of co-cultured marine microbes and Ruegeria pomeroyi DSS-3 | Transcriptomes of co-cultured marine microbes and Ruegeria pomeroyi DSS-3 |
Transcriptomic response of Emiliania huxleyi to HHQ | Transcriptomic response of Emiliania huxleyi to HHQ |
Transcriptomic responses to saxitoxin | |
Transplant 16S Sequences | 16S sequence data in the form of fastq.gz files for all samples collected and sequenced as part of the Varadero Reef transplant experiment |
Trichodesmium AHL metatranscriptomes_AE1409 | GenBank Trichodesmium accessions and associated metadata |
Trichodesmium consortia FASTq accessions | NCBI accession numbers for raw RNA-seq fastq files derived from laboratory-maintained Trichodesmium erythraeum cultures |
Trichodesmium sequence accessions | GenBank Trichodesmium accessions and associated metadata |
USVI Time-series | USVI Time-series |
V4 SSU rRNA gene primer validation for reef seawater | Partial SSU rRNA genes of bacteria and archaea from reef seawater samples produced using 515F/806R and 515F/806RB primers |
Vent_CSP_SAG | Single amplified genomes (SAGs) of microbial cells isolated from Crab Spa, East Pacific Rise |
Whelan_2014_T3: toxin genes identified in Nemertean species | Toxin genes identified in Nemertean species |
Whole Genome Sequencing of Eelgrass Bodega and Tomales Bay | Whole Genome Sequencing of Eelgrass Bodega and Tomales Bay |
Wild copepod pool-seq data | Pool-seq data from wild populations of copepods in the North Sea |
WS1209 strains | Microbial culture collection, strain IDs, locations and depth from cruise WB1209 |
ZEN 2014 Site Survey Data | Eelgrass 2014 Site Survey Data |
Zostera experiment community biomass | Diversity and biomass of eelgrass inhabitants |
Zostera marina whole genome resequencing | Zostera marina whole genome resequencing |